jgi.p|Nanoce1779_2|653123, mRNA_937 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|653123
Unique Name	mRNA_937
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1593
Alignment location	scaffold_2:797462..799217 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	653209
Track	FilteredModels2
ProteinId	653123

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:797462..799217 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653123	gene_937	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|653123	mRNA_937-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_937	CDS_937	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:797462..799217+
coding sequence from alignment at scaffold_2:797462..799217+

mRNA sequence

>mRNA_937 ID=mRNA_937|Name=jgi.p|Nanoce1779_2|653123|organism=Nannochloropsis oceanica|type=mRNA|length=1593bp
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGCCGTTCACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCAT
TATGAAGGAAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGG
CAGGGATACGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGA
TGGTCACAAACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTT
ACTCTACGCTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGAT
TAAAAAGGCCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTC
GTGTGCATTTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCC
TGCTACTTTGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCT
TGCCCTGATGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCG
CCTACCCCACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGC
TTGATCACTGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGC
CGGTCAAGGAGGGGGGGGGGGGGCAGGAGGAAATAACTCAATGAATAGGG
GGGGGCCTTCTGACTTTGCTTCGGGCTTTACTGGCGCGCCTCCAAACCCA
ATGAATAATGGAGGTGGGGATGGAGCAGCCGGGCCGGGGGCAGCGAGTAG
CAACGCAGGAAATTACGGTCCGCGCCCCACTCGCGGCGTCCGAATAACGC
CCAACATGTATGGGGACGAGGACCAGCAGCAGACAGCGCCCTCTGTGTCT
GTCAATGCAGCATCACCACCGGCCACGCCAGCATCGGAACCAGAACTGCA
TGTGGGCCAATCGCCGCCGCAACACCCCGCCGTAGCTGCTTGA

protein sequence of jgi.p|Nanoce1779_2|653123

>mRNA_937-protein ID=mRNA_937-protein|Name=jgi.p|Nanoce1779_2|653123|organism=Nannochloropsis oceanica|type=polypeptide|length=531bp
MLFGWLFKPKAAPPVARKGPLTVLILDPVRRAIELFPNTKAVVEQVWNVL
PLALRALINPRDLLLFLTTRLLYRKACRALHAFHQFLWKRGGILDEPRPY
EDSVLGFMEPKLGTLTSFIGVTYIINVVLSLLVDIGWRVRADSGRLMASL
LYIAYGAYFVNEVKKQYLTSWVPSLQEDRRRSYIIDRSSSVVLWILATFS
CIECVSSFLKVPLSSTLAFGGFGGLAFGLASKDVPFTPGDMVSFTTRGTH
YEGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFETSF
TLRYQDFETLPEIILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTAS
CYFATKSLDEYLYLQQLALMEITRVVTECGCRFAYPTTHLDLVPKELGQS
LITGVVDYQNELEQVAAGQGGGGGAGGNNSMNRGGPSDFASGFTGAPPNP
MNNGGGDGAAGPGAASSNAGNYGPRPTRGVRITPNMYGDEDQQQTAPSVS
VNAASPPATPASEPELHVGQSPPQHPAVAA*

mRNA from alignment at scaffold_2:797462..799217+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_937 ID=mRNA_937|Name=jgi.p|Nanoce1779_2|653123|organism=Nannochloropsis oceanica|type=mRNA|length=1756bp|location=Sequence derived from alignment at scaffold_2:797462..799217+ (Nannochloropsis oceanica)
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGGTCAGCAACTTCTTCGGGGGGGGTCATGCTTTTGTTCACTGAGCCGTT
CACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAG
GAAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGAT
ACGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCAC
AAACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTAC
GCTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAG
GCCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCA
TTTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACT
TTGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTG
ATGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCC
CACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCA
CTGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAA
GGAGGGGGGGGGGGGGCAGGAGGAAATAACTCAATGAATAGGGGGGGGCC
TTCTGACTTTGCTTCGGGCTTTACTGGCGCGCCTCCAAACCCAATGAATA
ATGGAGGTGGGGATGGAGCAGCCGGGCCGGGGGCAGCGAGTAGCAACGCA
GGAAATTACGGTCCGCGCCCCACTCGCGGCGTCCGAATAACGCCCAACAT
GTATGGGGACGAGGACGTAATGCCCACAAGCGTCATGCCGGGTCCTCCCT
TCCCACCTCCTCCACCAACGCCCACCCACGCCCAGCCTCCTCCTTCTCCA
CCACCAATCTACAACCCTTCCCCTCCCCATCAACAGCAGCAGCAGACAGC
GCCCTCTGTGTCTGTCAATGCAGCATCACCACCGGCCACGCCAGCATCGG
AACCAGAACTGCATGTGGGCCAATCGCCGCCGCAACACCCCGCCGTAGCT
GCTTGA

Coding sequence (CDS) from alignment at scaffold_2:797462..799217+

>mRNA_937 ID=mRNA_937|Name=jgi.p|Nanoce1779_2|653123|organism=Nannochloropsis oceanica|type=CDS|length=4779bp|location=Sequence derived from alignment at scaffold_2:797462..799217+ (Nannochloropsis oceanica)
ATGCTCTTTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACG
GAAAGGACCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTG
AGCTTTTTCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTG
CCTCTGGCGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCT
CACCACTCGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCC
ACCAGTTCCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTAC
GAGGACTCAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTC
CTTCATTGGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCG
ACATTGGCTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTA
CTCTATATTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTA
CCTCACCAGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACA
TCATTGATCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCG
TGCATTGAGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCT
TGCTTTTGGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACG
TGCCGTTCACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCAT
TATGAAGGAAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGG
CAGGGATACGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGA
TGGTCACAAACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTT
ACTCTACGCTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGAT
TAAAAAGGCCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTC
GTGTGCATTTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCC
TGCTACTTTGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCT
TGCCCTGATGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCG
CCTACCCCACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGC
TTGATCACTGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGC
CGGTCAAGGAGGGGGGGGGGGGGCAGGAGGAAATAACTCAATGAATAGGG
GGGGGCCTTCTGACTTTGCTTCGGGCTTTACTGGCGCGCCTCCAAACCCA
ATGAATAATGGAGGTGGGGATGGAGCAGCCGGGCCGGGGGCAGCGAGTAG
CAACGCAGGAAATTACGGTCCGCGCCCCACTCGCGGCGTCCGAATAACGC
CCAACATGTATGGGGACGAGGACCAGCAGCAGACAGCGCCCTCTGTGTCT
GTCAATGCAGCATCACCACCGGCCACGCCAGCATCGGAACCAGAACTGCA
TGTGGGCCAATCGCCGCCGCAACACCCCGCCGTAGCTGCTTGAATGCTCT
TTGGCTGGCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACGGAAAGGA
CCGCTGACAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTGAGCTTTT
TCCAAACACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTGCCTCTGG
CGTTACGGGCACTGATCAATCCCCGTGACCTCTTATTGTTTCTCACCACT
CGCCTATTGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCCACCAGTT
CCTGTGGAAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTACGAGGACT
CAGTGCTGGGTTTCATGGAACCAAAACTCGGCACTCTCACCTCCTTCATT
GGCGTCACCTACATCATCAATGTGGTACTTTCCTTGCTCGTCGACATTGG
CTGGCGCGTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTACTCTATA
TTGCATATGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTACCTCACC
AGCTGGGTCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACATCATTGA
TCGGTCCTCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCGTGCATTG
AGTGTGTTTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCTTGCTTTT
GGTGGATTCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACGTGCCGTT
CACCCCGGGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAG
GAAAAGTAGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGAT
ACGCGACCGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCAC
AAACATGGACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTAC
GCTATCAAGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAG
GCCTTGCGTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCA
TTTCACGCAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACT
TTGCAACCAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTG
ATGGAAATCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCC
CACCACGCATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCA
CTGGTGTGGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAA
GGAGGGGGGGGGGGGGCAGGAGGAAATAACTCAATGAATAGGGGGGGGCC
TTCTGACTTTGCTTCGGGCTTTACTGGCGCGCCTCCAAACCCAATGAATA
ATGGAGGTGGGGATGGAGCAGCCGGGCCGGGGGCAGCGAGTAGCAACGCA
GGAAATTACGGTCCGCGCCCCACTCGCGGCGTCCGAATAACGCCCAACAT
GTATGGGGACGAGGACCAGCAGCAGACAGCGCCCTCTGTGTCTGTCAATG
CAGCATCACCACCGGCCACGCCAGCATCGGAACCAGAACTGCATGTGGGC
CAATCGCCGCCGCAACACCCCGCCGTAGCTGCTTGAATGCTCTTTGGCTG
GCTTTTCAAGCCCAAGGCCGCCCCGCCCGTGGCACGGAAAGGACCGCTGA
CAGTGCTGATTCTCGATCCGGTGCGACGGGCAATTGAGCTTTTTCCAAAC
ACTAAGGCTGTGGTTGAACAGGTTTGGAACGTCTTGCCTCTGGCGTTACG
GGCACTGATCAATCCCCGTGACCTCTTATTGTTTCTCACCACTCGCCTAT
TGTACCGGAAGGCTTGCCGGGCTTTACATGCATTCCACCAGTTCCTGTGG
AAGCGCGGGGGGATTTTAGACGAGCCGCGTCCGTACGAGGACTCAGTGCT
GGGTTTCATGGAACCAAAACTCGGCACTCTCACCTCCTTCATTGGCGTCA
CCTACATCATCAATGTGGTACTTTCCTTGCTCGTCGACATTGGCTGGCGC
GTCCGGGCGGACTCTGGGCGGCTGATGGCCTCTCTACTCTATATTGCATA
TGGCGCGTATTTTGTAAATGAAGTCAAGAAGCAGTACCTCACCAGCTGGG
TCCCCTCTCTCCAAGAAGACCGTCGTCGCTCTTACATCATTGATCGGTCC
TCTTCTGTCGTGCTCTGGATCTTGGCGACCTTCTCGTGCATTGAGTGTGT
TTCCTCTTTTCTTAAGGTGCCCCTCTCCTCTACGCTTGCTTTTGGTGGAT
TCGGAGGGCTGGCGTTCGGGCTGGCGTCCAAGGACGTGCCGTTCACCCCG
GGGGACATGGTTTCATTTACCACTCGCGGCACGCATTATGAAGGAAAAGT
AGAGCGGGTGGGTTTCTACCAGACCCGGCTTCGAGGCAGGGATACGCGAC
CGACGTATGTGCCTAACTCAGTGTTTGTCGATACGATGGTCACAAACATG
GACAGAATCACGCACCGGAGGTTCGAAACATCCTTTACTCTACGCTATCA
AGACTTTGAAACCTTGCCAGAAATCATCCTGGAGATTAAAAAGGCCTTGC
GTGTTCTGCCAAAGGTGGATGTCCTTTCCCCCTTTCGTGTGCATTTCACG
CAATTCGGCTCCTACTGCCTCAGCCTTACCGCGTCCTGCTACTTTGCAAC
CAAGAGCTTGGACGAGTACCTCTACCTGCAACAGCTTGCCCTGATGGAAA
TCACACGTGTAGTGACGGAGTGCGGCTGTCGCTTCGCCTACCCCACCACG
CATCTCGACCTGGTGCCCAAAGAGCTAGGGCAAAGCTTGATCACTGGTGT
GGTGGACTACCAAAACGAACTCGAGCAAGTAGCAGCCGGTCAAGGAGGGG
GGGGGGGGGCAGGAGGAAATAACTCAATGAATAGGGGGGGGCCTTCTGAC
TTTGCTTCGGGCTTTACTGGCGCGCCTCCAAACCCAATGAATAATGGAGG
TGGGGATGGAGCAGCCGGGCCGGGGGCAGCGAGTAGCAACGCAGGAAATT
ACGGTCCGCGCCCCACTCGCGGCGTCCGAATAACGCCCAACATGTATGGG
GACGAGGACCAGCAGCAGACAGCGCCCTCTGTGTCTGTCAATGCAGCATC
ACCACCGGCCACGCCAGCATCGGAACCAGAACTGCATGTGGGCCAATCGC
CGCCGCAACACCCCGCCGTAGCTGCTTGA

Synonyms

Publications