jgi.p|Nanoce1779_2|606573, mRNA_9369 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606573
Unique Name	mRNA_9369
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2156
Alignment location	scaffold_35:227175..229330 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606659
Track	FilteredModels2
ProteinId	606573

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:227175..229330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606573	gene_9369	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606573	mRNA_9369-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9369	CDS_9369	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:227175..229330+
coding sequence from alignment at scaffold_35:227175..229330+

mRNA sequence

>mRNA_9369 ID=mRNA_9369|Name=jgi.p|Nanoce1779_2|606573|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp
ACAAAAGCACAGGGAATTTTCAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACCATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAACGATGTCAATGACATTCCAGTGT
CCGCGGTCACCTCAGCTGATGACACATCCTATGGAACACCAGTGGGCTTG
CAGTCTTATAGAATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCAT
GGCAAAACTGCGGCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTG
AGCAGTTTCCACAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCAC
TTCCTTCGGTTTCCCTATTTCACCCACCACGTTGACGACCTACCGATAAT
GACATCCTCGACTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATC
AGATTGCGCACTCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCAC
CTGGGTGCGATACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGA
TATCCTCTTATCCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCC
GGGTTGCAAAGGAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAG
GGTAACAATGCAATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCAC
TCCCTTTCCGTGGCAGCATCCATTCGTAGATATATTCTTATTTGTCGCCA
ATAACACGCACCTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAG
GTTTACCTTTTGACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGG
AATATCTGTCATGGGTCCACGAGAGGTCATTTCTTTGAGACGATACAATC
CTGAGACATGTATACTAGCTTCCTACAACCATAGACAGGAGCGTTCAATG
GAGTATTCGGGATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATT
CCCCTTCCGAAATAACCAGAATATTCTATACAACGGACACGCTACAATGA
TACTTGAGAACTATAAGGCAAATGACGATGATTACAATGCTGCAAGCCAA
ACATGGAACATTTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGA
AGCAAGCGGCCAACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGC
AAATTAACAATAACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTA
GTGGAATTTAATGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAAT
CATAGAAACATTGAACGCCGACGTTATCATTTTAAATGAGATGGACATTG
GTATGGCCCGATCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCC
TTAGGCATGAACTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGG
TACCAAAAAGGAACAACAAGATACCAACGGCTTGTACAACTTCCTCGGAT
TGCATGGAAATGCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATA
TTTCGTGAAAATATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAA
TGCCAATGGCTACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCC
GAATCCGAGATCCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAG
TGGGGAGGTGATGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGC
TGTCATTGCTGGGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTG
TTCATGTCGACAGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACA
CCCGGTACAGCTAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCT
GTCCGAAGCGACTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATAC
AACTCTCCGATCATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAA
GCATAA

protein sequence of jgi.p|Nanoce1779_2|606573

>mRNA_9369-protein ID=mRNA_9369-protein|Name=jgi.p|Nanoce1779_2|606573|organism=Nannochloropsis oceanica|type=polypeptide|length=668bp
MYPSYCAISIALILLCLWSVSIFHLDGDHGPLSSYVQLTTNNDVNDIPVS
AVTSADDTSYGTPVGLQSYRIEENMANGSEETMAKLRPAFPLPKADGDGE
QFPQWLKHLCPGVVDHFLRFPYFTHHVDDLPIMTSSTAAHSVCSIYLANQ
IAHSVDAPIYLNAGSHLGAILHGGPIPWDDDVDILLSYDKKDDFLAQCGR
VAKEFSFPDISINCTQGNNAIKFFISTPDSTSTPFPWQHPFVDIFLFVAN
NTHLYEVTPVGKVLSQVYLLTDFFPTELFYFGGISVMGPREVISLRRYNP
ETCILASYNHRQERSMEYSGSTTLNCGELATIFPFRNNQNILYNGHATMI
LENYKANDDDYNAASQTWNISATMRDTWQSLSEASGQQLTDSIANLNAVQ
INNNFSTCSAHANMTVVEFNAERGRQLMSAIKIIETLNADVIILNEMDIG
MARSDQQHTASLLASSLGMNYAWGLEFIELTRGTKKEQQDTNGLYNFLGL
HGNAILSKCKIEDPIIFRENIGDYFSDQNTSINANGYEKRLGGRMVMLAR
IRDPRNNTIVVGSTHKWGGDEAGVKAYIGDSQAVIAGDQDWSFCDRVGLV
HVDSRDHATWPASCETPGTARGDIICSNMKVALSEATKLPCVVEFGNKIQ
LSDHALTTVSLYHSEKA*

mRNA from alignment at scaffold_35:227175..229330+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9369 ID=mRNA_9369|Name=jgi.p|Nanoce1779_2|606573|organism=Nannochloropsis oceanica|type=mRNA|length=2156bp|location=Sequence derived from alignment at scaffold_35:227175..229330+ (Nannochloropsis oceanica)
ACAAAAGCACAGGGAATTTTCAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACCATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAACGATGTCAATGACATTCCAGTGT
CCGCGGTCACCTCAGCTGATGACACATCCTATGGAACACCAGTGGGCTTG
CAGTCTTATAGAATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCAT
GGCAAAACTGCGGCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTG
AGCAGTTTCCACAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCAC
TTCCTTCGGTTTCCCTATTTCACCCACCACGTTGACGACCTACCGATAAT
GACATCCTCGACTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATC
AGATTGCGCACTCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCAC
CTGGGTGCGATACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGA
TATCCTCTTATCCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCC
GGGTTGCAAAGGAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAG
GGTAACAATGCAATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCAC
TCCCTTTCCGTGGCAGCATCCATTCGTAGATATATTCTTATTTGTCGCCA
ATAACACGCACCTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAG
GTTTACCTTTTGACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGG
AATATCTGTCATGGGTCCACGAGAGGTCATTTCTTTGAGACGATACAATC
CTGAGACATGTATACTAGCTTCCTACAACCATAGACAGGAGCGTTCAATG
GAGTATTCGGGATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATT
CCCCTTCCGAAATAACCAGAATATTCTATACAACGGACACGCTACAATGA
TACTTGAGAACTATAAGGCAAATGACGATGATTACAATGCTGCAAGCCAA
ACATGGAACATTTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGA
AGCAAGCGGCCAACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGC
AAATTAACAATAACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTA
GTGGAATTTAATGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAAT
CATAGAAACATTGAACGCCGACGTTATCATTTTAAATGAGATGGACATTG
GTATGGCCCGATCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCC
TTAGGCATGAACTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGG
TACCAAAAAGGAACAACAAGATACCAACGGCTTGTACAACTTCCTCGGAT
TGCATGGAAATGCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATA
TTTCGTGAAAATATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAA
TGCCAATGGCTACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCC
GAATCCGAGATCCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAG
TGGGGAGGTGATGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGC
TGTCATTGCTGGGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTG
TTCATGTCGACAGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACA
CCCGGTACAGCTAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCT
GTCCGAAGCGACTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATAC
AACTCTCCGATCATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAA
GCATAA

Coding sequence (CDS) from alignment at scaffold_35:227175..229330+

>mRNA_9369 ID=mRNA_9369|Name=jgi.p|Nanoce1779_2|606573|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_35:227175..229330+ (Nannochloropsis oceanica)
ATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGCCT
TTGGTCCGTTTCTATTTTTCATCTAGACGGAGACCATGGGCCATTGTCCA
GTTATGTCCAGCTTACCACCAATAACGATGTCAATGACATTCCAGTGTCC
GCGGTCACCTCAGCTGATGACACATCCTATGGAACACCAGTGGGCTTGCA
GTCTTATAGAATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGG
CAAAACTGCGGCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAG
CAGTTTCCACAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTT
CCTTCGGTTTCCCTATTTCACCCACCACGTTGACGACCTACCGATAATGA
CATCCTCGACTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAG
ATTGCGCACTCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCT
GGGTGCGATACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATA
TCCTCTTATCCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGG
GTTGCAAAGGAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGG
TAACAATGCAATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTC
CCTTTCCGTGGCAGCATCCATTCGTAGATATATTCTTATTTGTCGCCAAT
AACACGCACCTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGT
TTACCTTTTGACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAA
TATCTGTCATGGGTCCACGAGAGGTCATTTCTTTGAGACGATACAATCCT
GAGACATGTATACTAGCTTCCTACAACCATAGACAGGAGCGTTCAATGGA
GTATTCGGGATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCC
CCTTCCGAAATAACCAGAATATTCTATACAACGGACACGCTACAATGATA
CTTGAGAACTATAAGGCAAATGACGATGATTACAATGCTGCAAGCCAAAC
ATGGAACATTTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAG
CAAGCGGCCAACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAA
ATTAACAATAACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGT
GGAATTTAATGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCA
TAGAAACATTGAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGT
ATGGCCCGATCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTT
AGGCATGAACTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTA
CCAAAAAGGAACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTG
CATGGAAATGCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATT
TCGTGAAAATATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATG
CCAATGGCTACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGA
ATCCGAGATCCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTG
GGGAGGTGATGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTG
TCATTGCTGGGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTT
CATGTCGACAGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACC
CGGTACAGCTAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGT
CCGAAGCGACTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAA
CTCTCCGATCATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGC
ATAA

Synonyms

Publications