jgi.p|Nanoce1779_2|606572, mRNA_9368 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606572
Unique NamemRNA_9368
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length649
Alignment locationscaffold_35:225808..226456 -

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Properties
Property NameValue
TranscriptId606658
TrackFilteredModels2
ProteinId606572
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:225808..226456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606572gene_9368Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606572mRNA_9368-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9368CDS_9368Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9368 ID=mRNA_9368|Name=jgi.p|Nanoce1779_2|606572|organism=Nannochloropsis oceanica|type=mRNA|length=649bp
CCTTTCTGAGCAATAAAGGGGAACAAAAGGGATGACACAGGCCTGCGCGA
AATCAACAGTATTACTCATACTGTTGCCTATTGCCTATACTGTTGATTCC
GCACACTCCTGTGTCATCCCTCTTGTCCCCCTTTCTCCGAGGGCGATGTC
CCCCTGTCAACCCCCAACCCGAGAGTACGGAGGGTACTCTGACTTTCCTT
TGACATGTAGTAAAATAAGCCACCAAATTCATCGGAAACCAACCACTCAT
ATATGCAATTAAATGCGTAAGAGGCGTCCTGTGTGAACTTTAAGGGCCTT
TTGGTCGTCTCTCTCTTTTCCTCTTTTCTCCCTCAAGCCCTTCTTCCCCC
CTCTCGTTCGCGCGCGTTATGACGAGCACCAAGTCACCACCAATTCTTTT
GACTTTGACTTTGTCAAATCTACAAGCCAACTTCACATCATTTCCTGATA
TGTTTCTTTCCTTCTTCGAGTGAGGGCACACCCAACATCCTCAGATTTTA
GACACGTCTAACCACTCCACGACCCCCTCGACAACACTCAGGGTCGGATA
GTGCCACGGTTCTTAGCGAAGCTATGAGGAGTAAAAAGGCTTGATAGCTG
AGATCGAGGAAAAGGACAGCCCCCAACGGCACTGACAGACAGCATGATG
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protein sequence of jgi.p|Nanoce1779_2|606572

>mRNA_9368-protein ID=mRNA_9368-protein|Name=jgi.p|Nanoce1779_2|606572|organism=Nannochloropsis oceanica|type=polypeptide|length=77bp
MTQACAKSTVLLILLPIAYTVDSAHSCVIPLVPLSPRAMSPCQPPTREYG
GYSDFPLTCSKISHQIHRKPTTHICN*
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mRNA from alignment at scaffold_35:225808..226456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9368 ID=mRNA_9368|Name=jgi.p|Nanoce1779_2|606572|organism=Nannochloropsis oceanica|type=mRNA|length=649bp|location=Sequence derived from alignment at scaffold_35:225808..226456- (Nannochloropsis oceanica)
CCTTTCTGAGCAATAAAGGGGAACAAAAGGGATGACACAGGCCTGCGCGA
AATCAACAGTATTACTCATACTGTTGCCTATTGCCTATACTGTTGATTCC
GCACACTCCTGTGTCATCCCTCTTGTCCCCCTTTCTCCGAGGGCGATGTC
CCCCTGTCAACCCCCAACCCGAGAGTACGGAGGGTACTCTGACTTTCCTT
TGACATGTAGTAAAATAAGCCACCAAATTCATCGGAAACCAACCACTCAT
ATATGCAATTAAATGCGTAAGAGGCGTCCTGTGTGAACTTTAAGGGCCTT
TTGGTCGTCTCTCTCTTTTCCTCTTTTCTCCCTCAAGCCCTTCTTCCCCC
CTCTCGTTCGCGCGCGTTATGACGAGCACCAAGTCACCACCAATTCTTTT
GACTTTGACTTTGTCAAATCTACAAGCCAACTTCACATCATTTCCTGATA
TGTTTCTTTCCTTCTTCGAGTGAGGGCACACCCAACATCCTCAGATTTTA
GACACGTCTAACCACTCCACGACCCCCTCGACAACACTCAGGGTCGGATA
GTGCCACGGTTCTTAGCGAAGCTATGAGGAGTAAAAAGGCTTGATAGCTG
AGATCGAGGAAAAGGACAGCCCCCAACGGCACTGACAGACAGCATGATG
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Coding sequence (CDS) from alignment at scaffold_35:225808..226456-

>mRNA_9368 ID=mRNA_9368|Name=jgi.p|Nanoce1779_2|606572|organism=Nannochloropsis oceanica|type=CDS|length=231bp|location=Sequence derived from alignment at scaffold_35:225808..226456- (Nannochloropsis oceanica)
ATGACACAGGCCTGCGCGAAATCAACAGTATTACTCATACTGTTGCCTAT
TGCCTATACTGTTGATTCCGCACACTCCTGTGTCATCCCTCTTGTCCCCC
TTTCTCCGAGGGCGATGTCCCCCTGTCAACCCCCAACCCGAGAGTACGGA
GGGTACTCTGACTTTCCTTTGACATGTAGTAAAATAAGCCACCAAATTCA
TCGGAAACCAACCACTCATATATGCAATTAA
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Synonyms
Publications