jgi.p|Nanoce1779_2|606570, mRNA_9367 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606570
Unique Name	mRNA_9367
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2592
Alignment location	scaffold_35:223216..225807 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606656
Track	FilteredModels2
ProteinId	606570

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:223216..225807 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606570	gene_9367	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606570	mRNA_9367-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9367	CDS_9367	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:223216..225807+
coding sequence from alignment at scaffold_35:223216..225807+

mRNA sequence

>mRNA_9367 ID=mRNA_9367|Name=jgi.p|Nanoce1779_2|606570|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp
ACAAAAGCACAGGGAATTTTCAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCT
CAGCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGA
ATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCG
GCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTTTC
CACAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGG
TTTCCCTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTC
GACTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGC
ACTCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCG
ATACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTT
ATCCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAA
AGGAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAAT
GCAATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCC
GTGGCAGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGC
ACCTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTT
TTGACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGT
CATGGGTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACAT
GTATACTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCG
GGATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCG
AAATAACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGA
ACTATAAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAAC
ATTTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGG
CCAACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACA
ATAACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTT
AATGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAAC
ATTGAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCC
GATCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATG
AACTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAA
GGAACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAA
ATGCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAA
AATATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGG
CTACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAG
ATCCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGT
GATGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGC
TGGGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCG
ACAGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACA
GCTAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGC
GACTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCG
ATCATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAAGGG
GAATTCAATTTTTCATTACCAGTCCAGGTCGACTCATCTTGGTGTTTGTA
CAAGGCCGAGGCGAGACGGAGATGACGATACTGGTGGCACTGTCTAGCTC
CTGAGGACGCCTCACACACAGGAACCCATGTCTTCCCTTCCCCGATCTTT
TCCCCCCCACATAAATAAGTGATGAGGCTCACACCAAGCGGATTGCCGAC
CTAGTACATTTTTATCTCTAGGTCCTAGATACTACTTTACACACTTGGCC
CCTTTCGTTCTCTTCAACATGTATATAGATAGAGCTCATGTTTTCCAACG
TGTGAAATGGATATAGGGGGACACAAATAATAAGTCTAAATGACAGCAAG
AGTGTGGCACGAAATAGAATGAAGAGAAGGAGGAGGAGAAATGGATAAAG
TAAGAAAGTTAAACATACAGTCAATACAAGCACAATCGACTT

protein sequence of jgi.p|Nanoce1779_2|606570

>mRNA_9367-protein ID=mRNA_9367-protein|Name=jgi.p|Nanoce1779_2|606570|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp
MYPSYCAISIALILLCLWSVSIFHLDGDYGPLSSYVQLTTNNDGVFTIPS
ADDTSYGTPVGLQSYRIEENMANGSEETMAKLRPAFPLPKADGDGEQFFP
QWLKHLCPGVVDHFLRFPYFTHHVDDLPIMTSSTAAHSVCSIYLANQIAH
SVDAPIYLNAGSHLGAILHGGPIPWDDDVDILLSYDKKDDFLAQCGRVAK
EFSFPDISINCTQGNNAIKFFISTPDSTSTPFPWQHPFLDVGLFVANNTH
LYEVTPVGKVLSQVYLLTDFFPTELFYFGGISVMGPREVISLRRYNPVTC
ILASYNHRQEHFMKYSGSTTLNCGELATIFPFRNNQNILYNGHATMILEN
YKANDDDYNAASQTWNISATMRDTWQSLSEASGQQLTDSIANLNAVQINN
NFSTCSAHANMTVVEFNAERGRQLMSAIKIIETLNADVIILNEMDIGMAR
SDQQHTASLLASSLGMNYAWGLEFIELTRGTKKEQQDTNGLYNFLGLHGN
AILSKCKIEDPIIFRENIGDYFSDQNTSINANGYEKRLGGRMVMLARIRD
PRNNTIVVGSTHKWGGDEAGVKAYIGDSQAVIAGDQDWSFCDRVGLVHVD
SRDHATWPASCETPGTARGDIICSNMKVALSEATKLPCVVEFGNKIQLSD
HALTTVSLYHSEKA*

mRNA from alignment at scaffold_35:223216..225807+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9367 ID=mRNA_9367|Name=jgi.p|Nanoce1779_2|606570|organism=Nannochloropsis oceanica|type=mRNA|length=2592bp|location=Sequence derived from alignment at scaffold_35:223216..225807+ (Nannochloropsis oceanica)
ACAAAAGCACAGGGAATTTTCAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCT
CAGCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGA
ATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCG
GCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTTTC
CACAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGG
TTTCCCTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTC
GACTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGC
ACTCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCG
ATACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTT
ATCCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAA
AGGAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAAT
GCAATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCC
GTGGCAGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGC
ACCTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTT
TTGACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGT
CATGGGTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACAT
GTATACTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCG
GGATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCG
AAATAACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGA
ACTATAAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAAC
ATTTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGG
CCAACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACA
ATAACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTT
AATGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAAC
ATTGAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCC
GATCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATG
AACTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAA
GGAACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAA
ATGCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAA
AATATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGG
CTACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAG
ATCCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGT
GATGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGC
TGGGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCG
ACAGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACA
GCTAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGC
GACTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCG
ATCATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAAGGG
GAATTCAATTTTTCATTACCAGTCCAGGTCGACTCATCTTGGTGTTTGTA
CAAGGCCGAGGCGAGACGGAGATGACGATACTGGTGGCACTGTCTAGCTC
CTGAGGACGCCTCACACACAGGAACCCATGTCTTCCCTTCCCCGATCTTT
TCCCCCCCACATAAATAAGTGATGAGGCTCACACCAAGCGGATTGCCGAC
CTAGTACATTTTTATCTCTAGGTCCTAGATACTACTTTACACACTTGGCC
CCTTTCGTTCTCTTCAACATGTATATAGATAGAGCTCATGTTTTCCAACG
TGTGAAATGGATATAGGGGGACACAAATAATAAGTCTAAATGACAGCAAG
AGTGTGGCACGAAATAGAATGAAGAGAAGGAGGAGGAGAAATGGATAAAG
TAAGAAAGTTAAACATACAGTCAATACAAGCACAATCGACTT

Coding sequence (CDS) from alignment at scaffold_35:223216..225807+

>mRNA_9367 ID=mRNA_9367|Name=jgi.p|Nanoce1779_2|606570|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_35:223216..225807+ (Nannochloropsis oceanica)
ATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGCCT
TTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTCCA
GTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCTCA
GCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGAAT
CGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCGGC
CTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTTTCCA
CAATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGGTT
TCCCTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTCGA
CTGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGCAC
TCCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCGAT
ACTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTTAT
CCTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAAAG
GAGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAATGC
AATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCCGT
GGCAGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGCAC
CTATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTTTT
GACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGTCA
TGGGTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACATGT
ATACTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCGGG
ATCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCGAA
ATAACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGAAC
TATAAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAACAT
TTCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGGCC
AACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACAAT
AACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTTAA
TGCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAACAT
TGAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCCGA
TCAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATGAA
CTACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAAGG
AACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAAAT
GCTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAAAA
TATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGGCT
ACGAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAGAT
CCACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGTGA
TGAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGCTG
GGGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCGAC
AGTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACAGC
TAGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGCGA
CTAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCGAT
CATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAA

Synonyms

Publications