jgi.p|Nanoce1779_2|606567, mRNA_9365 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606567
Unique Name	mRNA_9365
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2589
Alignment location	scaffold_35:219260..221848 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606653
Track	FilteredModels2
ProteinId	606567

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:219260..221848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606567	gene_9365	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606567	mRNA_9365-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9365	CDS_9365	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:219260..221848+
coding sequence from alignment at scaffold_35:219260..221848+

mRNA sequence

>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Nanoce1779_2|606567|organism=Nannochloropsis oceanica|type=mRNA|length=2589bp
ACAAAAGCACAGGGAATTTTTAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCT
CAGCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGA
ATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCG
GCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTCAC
AATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGGTTT
CCCTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTCGAC
TGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGCACT
CCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCGATA
CTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTTATC
CTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAAAGG
AGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAATGCA
ATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCCGTG
GCAGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGCACC
TATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTTTTG
ACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGTCAT
GGGTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACATGTA
AATTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCGGGA
TCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCGAAA
TAACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGAACT
ATAAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAACATT
TCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGGCCA
ACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACAATA
ACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTTAAT
GCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAACATT
GAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCCGAT
CAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATGAAC
TACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAAGGA
ACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAAATG
CTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAAAAT
ATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGGCTA
CAAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAGATC
CACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGTGAT
GAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGCTGG
GGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCGACA
GTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACAGCT
AGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGCGAC
TAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCGATC
ATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAAGGGGAA
TTCAATTTTTCATTACCAGTCCAGGTCGACTCATCTTGGTGTTTGTACAA
GGCCGAGGCGAGACGGAGATGACGATACTGGTGGCACTGTCTAGCTCCTG
AGGACGCCTCACACACAGGAACCCATGTCTTCCCTTCCCCGATCTTTTCC
CCCCCACATAAATAAGTGATGAGGCTCACACCAAGCGGATTGCCGACCTA
GTACATTTTTATCTGTAGGTCCTAGATACTACTTTACACACTTGGCCCCT
TTCGTTCTCTTCAACATGTATATAGATAGAGCTCATGTTTTCCAACGTGT
GAAATGGATATAGGGGGACACAAATAATAAGTCTAAATGACAGCAAGAGT
GTGGCACGAAATAGAATGAAGAGAAGGAGGAGGAGAAATGGATAAAGTAA
GAAAGTTAAACATACAGTCAATACAAGCACAATCGACTT

protein sequence of jgi.p|Nanoce1779_2|606567

>mRNA_9365-protein ID=mRNA_9365-protein|Name=jgi.p|Nanoce1779_2|606567|organism=Nannochloropsis oceanica|type=polypeptide|length=664bp
MYPSYCAISIALILLCLWSVSIFHLDGDYGPLSSYVQLTTNNDGVFTIPS
ADDTSYGTPVGLQSYRIEENMANGSEETMAKLRPAFPLPKADGDGEQFSQ
WLKHLCPGVVDHFLRFPYFTHHVDDLPIMTSSTAAHSVCSIYLANQIAHS
VDAPIYLNAGSHLGAILHGGPIPWDDDVDILLSYDKKDDFLAQCGRVAKE
FSFPDISINCTQGNNAIKFFISTPDSTSTPFPWQHPFLDVGLFVANNTHL
YEVTPVGKVLSQVYLLTDFFPTELFYFGGISVMGPREVISLRRYNPVTCK
LASYNHRQEHFMKYSGSTTLNCGELATIFPFRNNQNILYNGHATMILENY
KANDDDYNAASQTWNISATMRDTWQSLSEASGQQLTDSIANLNAVQINNN
FSTCSAHANMTVVEFNAERGRQLMSAIKIIETLNADVIILNEMDIGMARS
DQQHTASLLASSLGMNYAWGLEFIELTRGTKKEQQDTNGLYNFLGLHGNA
ILSKCKIEDPIIFRENIGDYFSDQNTSINANGYKKRLGGRMVMLARIRDP
RNNTIVVGSTHKWGGDEAGVKAYIGDSQAVIAGDQDWSFCDRVGLVHVDS
RDHATWPASCETPGTARGDIICSNMKVALSEATKLPCVVEFGNKIQLSDH
ALTTVSLYHSEKA*

mRNA from alignment at scaffold_35:219260..221848+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Nanoce1779_2|606567|organism=Nannochloropsis oceanica|type=mRNA|length=2589bp|location=Sequence derived from alignment at scaffold_35:219260..221848+ (Nannochloropsis oceanica)
ACAAAAGCACAGGGAATTTTTAGCCACCAAGTCAACCGCCCGCTTTGGGT
CCAGGCTTTATCGATCTACTGTGGTGAAACAACATGCTCTAAACTCTGCA
CTTTAAACTCTTAAAACGCCGTGTCATAAATCAACATTAACTCCAATTCC
AGATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGC
CTTTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTC
CAGTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCT
CAGCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGA
ATCGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCG
GCCTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTCAC
AATGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGGTTT
CCCTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTCGAC
TGCTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGCACT
CCGTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCGATA
CTTCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTTATC
CTATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAAAGG
AGTTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAATGCA
ATCAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCCGTG
GCAGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGCACC
TATACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTTTTG
ACTGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGTCAT
GGGTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACATGTA
AATTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCGGGA
TCTACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCGAAA
TAACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGAACT
ATAAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAACATT
TCTGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGGCCA
ACAATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACAATA
ACTTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTTAAT
GCGGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAACATT
GAACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCCGAT
CAGATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATGAAC
TACGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAAGGA
ACAACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAAATG
CTATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAAAAT
ATTGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGGCTA
CAAAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAGATC
CACGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGTGAT
GAAGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGCTGG
GGATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCGACA
GTAGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACAGCT
AGAGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGCGAC
TAAACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCGATC
ATGCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAAGGGGAA
TTCAATTTTTCATTACCAGTCCAGGTCGACTCATCTTGGTGTTTGTACAA
GGCCGAGGCGAGACGGAGATGACGATACTGGTGGCACTGTCTAGCTCCTG
AGGACGCCTCACACACAGGAACCCATGTCTTCCCTTCCCCGATCTTTTCC
CCCCCACATAAATAAGTGATGAGGCTCACACCAAGCGGATTGCCGACCTA
GTACATTTTTATCTGTAGGTCCTAGATACTACTTTACACACTTGGCCCCT
TTCGTTCTCTTCAACATGTATATAGATAGAGCTCATGTTTTCCAACGTGT
GAAATGGATATAGGGGGACACAAATAATAAGTCTAAATGACAGCAAGAGT
GTGGCACGAAATAGAATGAAGAGAAGGAGGAGGAGAAATGGATAAAGTAA
GAAAGTTAAACATACAGTCAATACAAGCACAATCGACTT

Coding sequence (CDS) from alignment at scaffold_35:219260..221848+

>mRNA_9365 ID=mRNA_9365|Name=jgi.p|Nanoce1779_2|606567|organism=Nannochloropsis oceanica|type=CDS|length=1992bp|location=Sequence derived from alignment at scaffold_35:219260..221848+ (Nannochloropsis oceanica)
ATGTACCCGTCATACTGTGCTATATCGATTGCCTTGATATTACTGTGCCT
TTGGTCCGTTTCTATTTTTCATCTAGACGGAGACTATGGGCCATTGTCCA
GTTATGTCCAGCTTACCACCAATAATGATGGAGTCTTTACGATCCCCTCA
GCTGATGACACATCCTATGGAACACCAGTGGGCTTGCAGTCTTATAGAAT
CGAAGAAAACATGGCCAATGGAAGCGAAGAAACCATGGCAAAACTGCGGC
CTGCGTTTCCTCTTCCAAAGGCTGACGGTGATGGTGAGCAGTTTTCACAA
TGGCTAAAGCATCTCTGTCCAGGCGTTGTGGATCACTTCCTTCGGTTTCC
CTATTTCACCCACCACGTTGACGACCTACCGATAATGACATCCTCGACTG
CTGCGCACTCAGTCTGTAGCATATACTTGGCAAATCAGATTGCGCACTCC
GTTGATGCCCCCATCTATCTAAATGCGGGCTCTCACCTGGGTGCGATACT
TCATGGGGGCCCGATTCCATGGGATGATGACGTCGATATCCTCTTATCCT
ATGACAAAAAAGACGATTTTCTCGCGCAATGTGGCCGGGTTGCAAAGGAG
TTCTCCTTCCCTGATATAAGTATAAATTGTACGCAGGGTAACAATGCAAT
CAAATTCTTCATCAGCACGCCGGACTCCACGAGCACTCCCTTTCCGTGGC
AGCATCCATTCTTAGATGTAGGTTTGTTTGTCGCCAATAACACGCACCTA
TACGAGGTGACACCTGTCGGAAAAGTCCTTAGCCAGGTTTACCTTTTGAC
TGACTTTTTCCCTACAGAATTGTTCTACTTTGGTGGAATATCTGTCATGG
GTCCACGAGAGGTCATTTCTTTGAGGCGTTACAATCCTGTGACATGTAAA
TTAGCTTCCTACAACCATAGACAGGAGCATTTTATGAAGTATTCGGGATC
TACAACTCTTAATTGCGGTGAACTTGCAACGATATTCCCCTTCCGAAATA
ACCAGAACATTCTATACAACGGACACGCTACAATGATACTTGAGAACTAT
AAGGCAAATGACGATGATTACAATGCCGCAAGCCAAACATGGAACATTTC
TGCGACAATGCGCGACACGTGGCAATCTTTATCAGAAGCAAGCGGCCAAC
AATTGACCGACTCTATTGCCAACCTTAATGCCGTGCAAATTAACAATAAC
TTCTCGACATGTAGTGCTCATGCCAACATGACTGTAGTGGAATTTAATGC
GGAACGTGGTCGTCAGTTGATGTCTGCTATCAAAATCATAGAAACATTGA
ACGCCGACGTTATCATTTTAAATGAGATGGACATTGGTATGGCCCGATCA
GATCAACAGCATACAGCCAGCCTCTTAGCTAGTTCCTTAGGCATGAACTA
CGCATGGGGTTTAGAGTTTATCGAGCTCACAAGAGGTACCAAAAAGGAAC
AACAAGATACCAACGGCTTGTACAACTTCCTCGGATTGCATGGAAATGCT
ATTTTATCAAAGTGTAAAATAGAGGACCCCATCATATTTCGTGAAAATAT
TGGGGACTATTTTTCAGACCAAAACACGTCAATTAATGCCAATGGCTACA
AAAAGCGCTTAGGAGGGAGAATGGTGATGCTTGCCCGAATCCGAGATCCA
CGGAACAATACAATCGTTGTTGGTTCTACGCATAAGTGGGGAGGTGATGA
AGCGGGCGTCAAGGCTTACATTGGCGATTCACAAGCTGTCATTGCTGGGG
ATCAGGACTGGAGCTTCTGTGACAGGGTTGGCCTTGTTCATGTCGACAGT
AGAGACCATGCAACTTGGCCCGCCTCGTGTGAAACACCCGGTACAGCTAG
AGGCGATATAATTTGCAGCAACATGAAAGTAGCCCTGTCCGAAGCGACTA
AACTACCCTGTGTGGTTGAATTCGGTAACAAAATACAACTCTCCGATCAT
GCGCTTACGACAGTCTCTCTTTATCATTCGGAAAAAGCATAA

Synonyms

Publications