jgi.p|Nanoce1779_2|272466, mRNA_9364 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|272466
Unique NamemRNA_9364
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1110
Alignment locationscaffold_35:216043..217523 +

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Properties
Property NameValue
TranscriptId272552
TrackFilteredModels2
ProteinId272466
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:216043..217523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|272466gene_9364Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|272466mRNA_9364-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9364CDS_9364Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9364 ID=mRNA_9364|Name=jgi.p|Nanoce1779_2|272466|organism=Nannochloropsis oceanica|type=mRNA|length=1110bp
ACAGAAGTCGGTCAGAGGGTGCTCGAAAAGGAGGAGAAAGAGGAGGACGA
CGAGGATGAGGACGAGGACGAGGAAGAGGACATCCGGGATATGTCCCTGG
GCAGCCACGCCTCTTCTCTCTGCGACGCAGCTGCGGCTGCAGCTGCAGCT
GCTGTTGCCGAGAGCCATCACGACCCGCACACTACCCTCGAGGAGGAAGG
GAGCGAGGAGGAGGAGAGCGAAGAAGAGGGGGACGAGGAAGAGGAGGTAG
TACGTCACCGCGTTCCTCGCCGCTCTCCGCTTCCTCCTTCTCTCCCTCCC
TCCCGCCGACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AGGGGGCTCCCGCTCCTTCCCCTTCCCGTCCTTTTGTCTCCCGTCTGACC
CCTCGCCAGCAGCAGCAGCGACCTTCATCCCCTTCCTCCTTCCAACCCTC
TCCTTCCTCCTCTACCATCGCTACCGCCGCCGCTGGTGCCGCTGGTGCCA
GCAGCATCAGCAGCAGCAACAGTAGCAGCAGCAAGGCTTCGCGGAGGGAG
GGAGGGAGGGAGGGCAGAAGGCCGTCAACGACCGCCTCGCCGACCCCCCC
CCTCTGCTCTCAAGGGACAAGCGCTCTTCCAGTCCCCCTTGGCGCCACTC
CTCCCAGGACGCGAGAACTACTCGCCTTCCTCCATGCACAAGACCCCGCC
GCCTCCCCCCCTCCCTGCCCCTACCCCTCCCTCCGTCCTCTCCTCGCGCC
TCTCCTCTCATCCCTCATCCTCCACCACCACCACCCGCGGCATCCTGCGT
CCCCGGGACCCCAACATTCTGCTCCCTTCAGCTTCTCGGGCTCAGGCTGG
GCGGACCACGCCGGCCATTCAAAGTCCCTTCCTCGAAGCCTACAAAGTCC
GGCGGCAACGGCAACAGCAGGAGCAACAGCCACCGCCCTCTCCCTCCCTC
CCTCCCTCCTACCAGCCCTACCTCCGCACCTCCCACGGTAGCAGCAGCGG
CATCGGCGGCGTCAGTTGTAGCACAGGCAAGGACCGATGATGGGGAGGGA
AGGAGGATGG
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protein sequence of jgi.p|Nanoce1779_2|272466

>mRNA_9364-protein ID=mRNA_9364-protein|Name=jgi.p|Nanoce1779_2|272466|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MSLGSHASSLCDAAAAAAAAAVAESHHDPHTTLEEEGSEEEESEEEGDEE
EEVVRHRVPRRSPLPPSLPPSRRQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQGAPAPSPSRPFVSRLTPRQQQQRPSSPSSFQPSPSSSTIATAAAGA
AGASSISSSNSSSSKASRREGGREGRRPSTTASPTPPLCSQGTSALPVPL
GATPPRTRELLAFLHAQDPAASPPPCPYPSLRPLLAPLLSSLILHHHHPR
HPASPGPQHSAPFSFSGSGWADHAGHSKSLPRSLQSPAATATAGATATAL
SLPPSLLPALPPHLPR*
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mRNA from alignment at scaffold_35:216043..217523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9364 ID=mRNA_9364|Name=jgi.p|Nanoce1779_2|272466|organism=Nannochloropsis oceanica|type=mRNA|length=1481bp|location=Sequence derived from alignment at scaffold_35:216043..217523+ (Nannochloropsis oceanica)
ACAGAAGTCGGTCAGAGGGTGCTCGAAAAGGAGGAGAAAGAGGAGGACGA CGAGGATGAGGACGAGGACGAGGAAGAGGACATCCGGGTGAGTTTCTGTC TTGTACTTAATCTCGCTCTTGACTGCATCCCTCCACTCACCTCACCCTCC CTCTCTTCTTTCCTCCCTCCCTCCCTCCCTCTAAAGGATATGTCCCTGGG CAGCCACGCCTCTTCTCTCTGCGACGCAGCTGCGGCTGCAGCTGCAGCTG CTGTTGCCGAGAGCCATCACGACCCGCACACTACCCTCGAGGAGGAAGGG AGCGAGGAGGAGGAGAGCGAAGAAGAGGGGGACGAGGAAGAGGAGGTAGT ACGTCACCGCGTTCCTCGCCGCTCTCCGCTTCCTCCTTCTCTCCCTCCCT CCCGCCGACAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAA CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA GGGGGCTCCCGCTCCTTCCCCTTCCCGTCCTTTTGTCTCCCGTCTGACCC CTCGCCAGCAGCAGCAGCGACCTTCATCCCCTTCCTCCTTCCAACCCTCT CCTTCCTCCTCTACCATCGCTACCGCCGCCGCTGGTGCCGCTGGTGCCAG CAGCATCAGCAGCAGCAACAGTAGCAGCAGCAAGGCTTCGCGGAGGGAGG GAGGGAGGGAGGGCAGAAGGCCGTCAACGACCGCCTCGCCGACCCCCCCC CTCTGCTCTCAAGGGACAAGCGCTCTTCCAGTCCCCCTTGGCGCCACTCC TCCCAGGACGCGAGGTGAGGAAAGAGAATGCGAGGGAAGGAGGCCGAAAC AGCTGAAGCAACGCACACAAATTACTCTATCGCACCTTGCTCTGCCCTTC TTACTCACATGTCACCCCTCTGCTCCCTCCCTTTCGATTTTCCCCCACAG AACTACTCGCCTTCCTCCATGCACAAGACCCCGCCGCCTCCCCCCCTCCC TGCCCCTACCCCTCCCTCCGTCCTCTCCTCGCGCCTCTCCTCTCATCCCT CATCCTCCACCACCACCACCCGCGGCATCCTGCGTCCCCGGGACCCCAAC ATTCTGCTCCCTTCAGCTTCTCGGGCTCAGGCTGGGCGGACCACGCCGGC CATTCAAAGGTAGGAAAGGAAGGAAAGAAAGGAGGAAGGGAAGGAGAGGG CTTAAGGGGGAAATAAGTGTGTAACTATCTGGTCTCTGTAACTATCTGAT ATCTCATACCACTCCCGTTCCCCCCACCCTCCATCCCTCCCTCAGTCCCT TCCTCGAAGCCTACAAAGTCCGGCGGCAACGGCAACAGCAGGAGCAACAG CCACCGCCCTCTCCCTCCCTCCCTCCCTCCTACCAGCCCTACCTCCGCAC CTCCCACGGTAGCAGCAGCGGCATCGGCGGCGTCAGTTGTAGCACAGGCA AGGACCGATGATGGGGAGGGAAGGAGGATGG
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Coding sequence (CDS) from alignment at scaffold_35:216043..217523+

>mRNA_9364 ID=mRNA_9364|Name=jgi.p|Nanoce1779_2|272466|organism=Nannochloropsis oceanica|type=CDS|length=2853bp|location=Sequence derived from alignment at scaffold_35:216043..217523+ (Nannochloropsis oceanica)
ATGTCCCTGGGCAGCCACGCCTCTTCTCTCTGCGACGCAGCTGCGGCTGC
AGCTGCAGCTGCTGTTGCCGAGAGCCATCACGACCCGCACACTACCCTCG
AGGAGGAAGGGAGCGAGGAGGAGGAGAGCGAAGAAGAGGGGGACGAGGAA
GAGGAGGTAGTACGTCACCGCGTTCCTCGCCGCTCTCCGCTTCCTCCTTC
TCTCCCTCCCTCCCGCCGACAACAGCAGCAGCAGCAGCAGCAGCAGCAAC
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAA
CAACAACAACAGGGGGCTCCCGCTCCTTCCCCTTCCCGTCCTTTTGTCTC
CCGTCTGACCCCTCGCCAGCAGCAGCAGCGACCTTCATCCCCTTCCTCCT
TCCAACCCTCTCCTTCCTCCTCTACCATCGCTACCGCCGCCGCTGGTGCC
GCTGGTGCCAGCAGCATCAGCAGCAGCAACAGTAGCAGCAGCAAGGCTTC
GCGGAGGGAGGGAGGGAGGGAGGGCAGAAGGCCGTCAACGACCGCCTCGC
CGACCCCCCCCCTCTGCTCTCAAGGGACAAGCGCTCTTCCAGTCCCCCTT
GGCGCCACTCCTCCCAGGACGCGAGAACTACTCGCCTTCCTCCATGCACA
AGACCCCGCCGCCTCCCCCCCTCCCTGCCCCTACCCCTCCCTCCGTCCTC
TCCTCGCGCCTCTCCTCTCATCCCTCATCCTCCACCACCACCACCCGCGG
CATCCTGCGTCCCCGGGACCCCAACATTCTGCTCCCTTCAGCTTCTCGGG
CTCAGGCTGGGCGGACCACGCCGGCCATTCAAAGTCCCTTCCTCGAAGCC
TACAAAGTCCGGCGGCAACGGCAACAGCAGGAGCAACAGCCACCGCCCTC
TCCCTCCCTCCCTCCCTCCTACCAGCCCTACCTCCGCACCTCCCACGGTA
GATGTCCCTGGGCAGCCACGCCTCTTCTCTCTGCGACGCAGCTGCGGCTG
CAGCTGCAGCTGCTGTTGCCGAGAGCCATCACGACCCGCACACTACCCTC
GAGGAGGAAGGGAGCGAGGAGGAGGAGAGCGAAGAAGAGGGGGACGAGGA
AGAGGAGGTAGTACGTCACCGCGTTCCTCGCCGCTCTCCGCTTCCTCCTT
CTCTCCCTCCCTCCCGCCGACAACAGCAGCAGCAGCAGCAGCAGCAGCAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAGGGGGCTCCCGCTCCTTCCCCTTCCCGTCCTTTTGTCT
CCCGTCTGACCCCTCGCCAGCAGCAGCAGCGACCTTCATCCCCTTCCTCC
TTCCAACCCTCTCCTTCCTCCTCTACCATCGCTACCGCCGCCGCTGGTGC
CGCTGGTGCCAGCAGCATCAGCAGCAGCAACAGTAGCAGCAGCAAGGCTT
CGCGGAGGGAGGGAGGGAGGGAGGGCAGAAGGCCGTCAACGACCGCCTCG
CCGACCCCCCCCCTCTGCTCTCAAGGGACAAGCGCTCTTCCAGTCCCCCT
TGGCGCCACTCCTCCCAGGACGCGAGAACTACTCGCCTTCCTCCATGCAC
AAGACCCCGCCGCCTCCCCCCCTCCCTGCCCCTACCCCTCCCTCCGTCCT
CTCCTCGCGCCTCTCCTCTCATCCCTCATCCTCCACCACCACCACCCGCG
GCATCCTGCGTCCCCGGGACCCCAACATTCTGCTCCCTTCAGCTTCTCGG
GCTCAGGCTGGGCGGACCACGCCGGCCATTCAAAGTCCCTTCCTCGAAGC
CTACAAAGTCCGGCGGCAACGGCAACAGCAGGAGCAACAGCCACCGCCCT
CTCCCTCCCTCCCTCCCTCCTACCAGCCCTACCTCCGCACCTCCCACGGT
AGATGTCCCTGGGCAGCCACGCCTCTTCTCTCTGCGACGCAGCTGCGGCT
GCAGCTGCAGCTGCTGTTGCCGAGAGCCATCACGACCCGCACACTACCCT
CGAGGAGGAAGGGAGCGAGGAGGAGGAGAGCGAAGAAGAGGGGGACGAGG
AAGAGGAGGTAGTACGTCACCGCGTTCCTCGCCGCTCTCCGCTTCCTCCT
TCTCTCCCTCCCTCCCGCCGACAACAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAGGGGGCTCCCGCTCCTTCCCCTTCCCGTCCTTTTGTC
TCCCGTCTGACCCCTCGCCAGCAGCAGCAGCGACCTTCATCCCCTTCCTC
CTTCCAACCCTCTCCTTCCTCCTCTACCATCGCTACCGCCGCCGCTGGTG
CCGCTGGTGCCAGCAGCATCAGCAGCAGCAACAGTAGCAGCAGCAAGGCT
TCGCGGAGGGAGGGAGGGAGGGAGGGCAGAAGGCCGTCAACGACCGCCTC
GCCGACCCCCCCCCTCTGCTCTCAAGGGACAAGCGCTCTTCCAGTCCCCC
TTGGCGCCACTCCTCCCAGGACGCGAGAACTACTCGCCTTCCTCCATGCA
CAAGACCCCGCCGCCTCCCCCCCTCCCTGCCCCTACCCCTCCCTCCGTCC
TCTCCTCGCGCCTCTCCTCTCATCCCTCATCCTCCACCACCACCACCCGC
GGCATCCTGCGTCCCCGGGACCCCAACATTCTGCTCCCTTCAGCTTCTCG
GGCTCAGGCTGGGCGGACCACGCCGGCCATTCAAAGTCCCTTCCTCGAAG
CCTACAAAGTCCGGCGGCAACGGCAACAGCAGGAGCAACAGCCACCGCCC
TCTCCCTCCCTCCCTCCCTCCTACCAGCCCTACCTCCGCACCTCCCACGG
TAG
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Synonyms
Publications