jgi.p|Nanoce1779_2|606559, mRNA_9362 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606559
Unique NamemRNA_9362
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length506
Alignment locationscaffold_35:212350..212855 -

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Properties
Property NameValue
TranscriptId606645
TrackFilteredModels2
ProteinId606559
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:212350..212855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606559gene_9362Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606559mRNA_9362-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9362CDS_9362Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9362 ID=mRNA_9362|Name=jgi.p|Nanoce1779_2|606559|organism=Nannochloropsis oceanica|type=mRNA|length=506bp
GGGCGAGAAACTTTTGAGAAATGTTGATGCCCTCCTTGTTCTTCCGCTGG
AGTAAAATTGTGCCTTATTCATGTCCTTCAGATACAAGGGTATAACAGAG
GTTCTGTTATATCGGTTGGTAACAGGGGCTTTTGTGCGCCCATGTCAGCA
TCATCATCATCACCGTCCTCGCCCACGGGGTGTGTGCCACGAGCACATGC
ATTATTCAACATGCCACTTTCCCTAACCCCTCTGGCCACTGCCGCGATGA
CCGACCAACACATTCAAAAGATCGACGTGGAGAGGATACGGATGGGCATA
ACGAGCAGGGAGGGAGAAGGAGTACAACGACAGCGCGGCGGCCAGAGACC
AAGATCGACCCCCCATCCTCATCGCAAGTTGAATCTCTCTCGCATGTCCA
CATGCTTATAGACACCCACCCTCTCCATCCCACAAACAAACGCAGAGCGT
TCTATCGGGGCAGCCGCCAAAGTAGCGGCAGTTGCAGGGATAGGACTGTC
GGGAAC
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protein sequence of jgi.p|Nanoce1779_2|606559

>mRNA_9362-protein ID=mRNA_9362-protein|Name=jgi.p|Nanoce1779_2|606559|organism=Nannochloropsis oceanica|type=polypeptide|length=90bp
MSASSSSPSSPTGCVPRAHALFNMPLSLTPLATAAMTDQHIQKIDVERIR
MGITSREGEGVQRQRGGQRPRSTPHPHRKLNLSRMSTCL*
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mRNA from alignment at scaffold_35:212350..212855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9362 ID=mRNA_9362|Name=jgi.p|Nanoce1779_2|606559|organism=Nannochloropsis oceanica|type=mRNA|length=506bp|location=Sequence derived from alignment at scaffold_35:212350..212855- (Nannochloropsis oceanica)
GGGCGAGAAACTTTTGAGAAATGTTGATGCCCTCCTTGTTCTTCCGCTGG
AGTAAAATTGTGCCTTATTCATGTCCTTCAGATACAAGGGTATAACAGAG
GTTCTGTTATATCGGTTGGTAACAGGGGCTTTTGTGCGCCCATGTCAGCA
TCATCATCATCACCGTCCTCGCCCACGGGGTGTGTGCCACGAGCACATGC
ATTATTCAACATGCCACTTTCCCTAACCCCTCTGGCCACTGCCGCGATGA
CCGACCAACACATTCAAAAGATCGACGTGGAGAGGATACGGATGGGCATA
ACGAGCAGGGAGGGAGAAGGAGTACAACGACAGCGCGGCGGCCAGAGACC
AAGATCGACCCCCCATCCTCATCGCAAGTTGAATCTCTCTCGCATGTCCA
CATGCTTATAGACACCCACCCTCTCCATCCCACAAACAAACGCAGAGCGT
TCTATCGGGGCAGCCGCCAAAGTAGCGGCAGTTGCAGGGATAGGACTGTC
GGGAAC
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Coding sequence (CDS) from alignment at scaffold_35:212350..212855-

>mRNA_9362 ID=mRNA_9362|Name=jgi.p|Nanoce1779_2|606559|organism=Nannochloropsis oceanica|type=CDS|length=270bp|location=Sequence derived from alignment at scaffold_35:212350..212855- (Nannochloropsis oceanica)
ATGTCAGCATCATCATCATCACCGTCCTCGCCCACGGGGTGTGTGCCACG
AGCACATGCATTATTCAACATGCCACTTTCCCTAACCCCTCTGGCCACTG
CCGCGATGACCGACCAACACATTCAAAAGATCGACGTGGAGAGGATACGG
ATGGGCATAACGAGCAGGGAGGGAGAAGGAGTACAACGACAGCGCGGCGG
CCAGAGACCAAGATCGACCCCCCATCCTCATCGCAAGTTGAATCTCTCTC
GCATGTCCACATGCTTATAG
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Synonyms
Publications