jgi.p|Nanoce1779_2|574714, mRNA_936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574714
Unique NamemRNA_936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2170
Alignment locationscaffold_2:793484..795653 -

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Properties
Property NameValue
TranscriptId574800
TrackFilteredModels2
ProteinId574714
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:793484..795653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574714gene_936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574714mRNA_936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_936CDS_936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_936 ID=mRNA_936|Name=jgi.p|Nanoce1779_2|574714|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
AGATCCCTCTTCCCTGTATATCCAAGCAAACAAGCAAGATGAACGGCGCG
CCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGTCAAGCTGCTGCC
CAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTGAGGACGTGAAGG
GCAGCGTTGCGTATACCTACGACGATTTGATTTTGATGCCCGCACATATT
AATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTTCACACGCAAGAT
CGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACACGGTAACGGAGG
ACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATCGGCGTGGTCCAC
TATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAACAAGGTGAAAAA
GTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTGGGCCTGACAACA
CCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGCTTTGCGGGCTTC
CCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGTGGGGATGATCTC
GCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGAAGCTCTCTAGCC
TTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTGACCCTCGAGCAA
GCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCTGCCCATTGTCAA
CGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCGACATTAAAAAGA
GCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAGCAGCTCCTTTGC
GGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCGTCTCGTTGCCCT
CGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGTCGCAGGGCGATT
CTTTGTTTCAGTACGATATGATTCATCACATCAAAACGACTTTTCCGGCG
GTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCAAGCCTTTAACCT
CATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGGGCTCCGGTTCTA
TTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCGGCATGCTCAGCT
ATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGTGCCTGTTATTGC
GGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGGCCTTTTGCGTGG
GCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGGACGGAGGAGGCT
CCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAAGCGGTACCGAGG
AATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAAAGCGTTATTTCG
CTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGCGGTGCAGTGACA
GACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGACCACGGGTGTGCG
TCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTGACCTCCACAAGC
GACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCCCCGGCGGCACAG
CGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCGTAAGCTGTTCGC
ATAAACGGTTGTGTGAGTAAGTGATATTGTCGGTGAGTGAGGAAAAGAGA
GGGAGGGGCCTTCAGCCGCTGAAGACGAGCTGAGTTGCTAGGGTATGTAC
ATACAGCAAGGCACCGTCTATTTTTCCCTTTGCTCCTGTTCCTGCGCAGC
CCCCGTCCTCTCTTTTTCGAGGAAAGCTATAGGCATCATGCAAGAACAAC
ATATCAGCGAGGCGAGGCGATTCTGGAATGATAGTATCGGAAAATGATGG
GTTAGAATGATGGGAATGAAACCAGAAGAAAAAATCAAGGGGCTCGTGCT
GCGAGGCAACCTGGAAAAACATCGACCCGTTGCGTGTCGTGACTGATTAG
TTCGCGCTTGGTGACGAAGAAAGAAAGAGTGTGCTCTCGTGCTCTGAGCG
AGCTAAGCCAGGATGACGATCTCTCTTTCTCTCCTTAAAGATGAGAGGAG
TGGTAGAGAGGATTGCCTTCGCGTCTGCTCTCATTAGTCCGTTTGTGATC
CTTCAGAGATAAAACTGGAAGCAGAAGAAGAAAAACAAGAAAACGAAGAT
GAAGAAAAATAAAGAAGGGG
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protein sequence of jgi.p|Nanoce1779_2|574714

>mRNA_936-protein ID=mRNA_936-protein|Name=jgi.p|Nanoce1779_2|574714|organism=Nannochloropsis oceanica|type=polypeptide|length=522bp
MNGAPLDPKTAKWEELVKLLPKGNGGYTATEVFEDVKGSVAYTYDDLILM
PAHINFGVNDVVLESNFTRKIALKTPMASSPMDTVTEDKMAIMMALHGGI
GVVHYNCTIEDQAEMVNKVKKYKNGFIHDPVVLGPDNTVGDVDAITAAKG
FAGFPITENGKLGGKLVGMISRRDVDFVDDKDTKLSSLMVTDVVTAKDGV
TLEQANAIIRTSKKGKLPIVNDAGELVSLISRADIKKSRDYPLASKDANK
QLLCGAAIGTRPNDRDRLVALVAAGVDVIIIDSSQGDSLFQYDMIHHIKT
TFPAVQVVAGNVVTAHQAFNLIRAGADGLRVGMGSGSICTTQEVCAAGRA
ACSAIYHTSRLASMFGVPVIADGGIGSTGHIVKAFCVGASCVMMGSLLAG
TEEAPGEYFYQDGVRLKRYRGMGSVEAMAKGSEKRYFASGAVVKVAQGVS
GAVTDRGSMARYIPYLTTGVRHGLQDLGSVSLADLHKRRDAGLLRFEVRS
PAAQREGGVHGLHMHERKLFA*
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mRNA from alignment at scaffold_2:793484..795653-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_936 ID=mRNA_936|Name=jgi.p|Nanoce1779_2|574714|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp|location=Sequence derived from alignment at scaffold_2:793484..795653- (Nannochloropsis oceanica)
AGATCCCTCTTCCCTGTATATCCAAGCAAACAAGCAAGATGAACGGCGCG
CCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGTCAAGCTGCTGCC
CAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTGAGGACGTGAAGG
GCAGCGTTGCGTATACCTACGACGATTTGATTTTGATGCCCGCACATATT
AATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTTCACACGCAAGAT
CGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACACGGTAACGGAGG
ACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATCGGCGTGGTCCAC
TATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAACAAGGTGAAAAA
GTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTGGGCCTGACAACA
CCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGCTTTGCGGGCTTC
CCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGTGGGGATGATCTC
GCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGAAGCTCTCTAGCC
TTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTGACCCTCGAGCAA
GCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCTGCCCATTGTCAA
CGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCGACATTAAAAAGA
GCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAGCAGCTCCTTTGC
GGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCGTCTCGTTGCCCT
CGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGTCGCAGGGCGATT
CTTTGTTTCAGTACGATATGATTCATCACATCAAAACGACTTTTCCGGCG
GTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCAAGCCTTTAACCT
CATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGGGCTCCGGTTCTA
TTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCGGCATGCTCAGCT
ATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGTGCCTGTTATTGC
GGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGGCCTTTTGCGTGG
GCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGGACGGAGGAGGCT
CCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAAGCGGTACCGAGG
AATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAAAGCGTTATTTCG
CTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGCGGTGCAGTGACA
GACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGACCACGGGTGTGCG
TCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTGACCTCCACAAGC
GACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCCCCGGCGGCACAG
CGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCGTAAGCTGTTCGC
ATAAACGGTTGTGTGAGTAAGTGATATTGTCGGTGAGTGAGGAAAAGAGA
GGGAGGGGCCTTCAGCCGCTGAAGACGAGCTGAGTTGCTAGGGTATGTAC
ATACAGCAAGGCACCGTCTATTTTTCCCTTTGCTCCTGTTCCTGCGCAGC
CCCCGTCCTCTCTTTTTCGAGGAAAGCTATAGGCATCATGCAAGAACAAC
ATATCAGCGAGGCGAGGCGATTCTGGAATGATAGTATCGGAAAATGATGG
GTTAGAATGATGGGAATGAAACCAGAAGAAAAAATCAAGGGGCTCGTGCT
GCGAGGCAACCTGGAAAAACATCGACCCGTTGCGTGTCGTGACTGATTAG
TTCGCGCTTGGTGACGAAGAAAGAAAGAGTGTGCTCTCGTGCTCTGAGCG
AGCTAAGCCAGGATGACGATCTCTCTTTCTCTCCTTAAAGATGAGAGGAG
TGGTAGAGAGGATTGCCTTCGCGTCTGCTCTCATTAGTCCGTTTGTGATC
CTTCAGAGATAAAACTGGAAGCAGAAGAAGAAAAACAAGAAAACGAAGAT
GAAGAAAAATAAAGAAGGGG
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Coding sequence (CDS) from alignment at scaffold_2:793484..795653-

>mRNA_936 ID=mRNA_936|Name=jgi.p|Nanoce1779_2|574714|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_2:793484..795653- (Nannochloropsis oceanica)
ATGAACGGCGCGCCGCTCGACCCCAAGACCGCCAAGTGGGAGGAGCTGGT
CAAGCTGCTGCCCAAGGGCAACGGGGGCTATACCGCCACGGAAGTGTTTG
AGGACGTGAAGGGCAGCGTTGCGTATACCTACGACGATTTGATTTTGATG
CCCGCACATATTAATTTTGGTGTGAATGATGTGGTATTGGAGAGTAATTT
CACACGCAAGATCGCCTTGAAGACGCCCATGGCCTCTTCGCCTATGGACA
CGGTAACGGAGGACAAGATGGCCATTATGATGGCCTTGCACGGGGGTATC
GGCGTGGTCCACTATAACTGCACCATTGAGGATCAGGCAGAGATGGTTAA
CAAGGTGAAAAAGTACAAAAACGGTTTTATCCACGATCCGGTCGTGCTTG
GGCCTGACAACACCGTGGGTGACGTGGACGCCATCACAGCAGCCAAGGGC
TTTGCGGGCTTCCCCATCACGGAGAACGGCAAGTTAGGGGGGAAGTTGGT
GGGGATGATCTCGCGTCGGGACGTGGACTTTGTCGATGACAAGGACACGA
AGCTCTCTAGCCTTATGGTAACGGACGTGGTGACCGCCAAGGACGGCGTG
ACCCTCGAGCAAGCCAATGCCATCATCCGTACCTCTAAGAAGGGCAAGCT
GCCCATTGTCAACGACGCCGGCGAGTTGGTCTCACTTATCTCCCGGGCCG
ACATTAAAAAGAGCCGCGACTATCCCCTGGCTTCCAAGGACGCCAACAAG
CAGCTCCTTTGCGGGGCCGCCATCGGTACGCGCCCAAACGACCGGGACCG
TCTCGTTGCCCTCGTCGCCGCTGGGGTGGACGTCATCATCATTGATTCGT
CGCAGGGCGATTCTTTGTTTCAGTACGATATGATTCATCACATCAAAACG
ACTTTTCCGGCGGTGCAGGTGGTGGCTGGCAACGTGGTGACGGCCCACCA
AGCCTTTAACCTCATAAGGGCTGGGGCGGACGGTCTGCGCGTGGGGATGG
GCTCCGGTTCTATTTGTACCACGCAAGAGGTGTGCGCGGCAGGGCGCGCG
GCATGCTCAGCTATCTACCACACGAGCCGGTTGGCGAGCATGTTTGGTGT
GCCTGTTATTGCGGATGGTGGGATCGGAAGCACGGGGCATATTGTCAAGG
CCTTTTGCGTGGGCGCGTCGTGTGTGATGATGGGCTCGTTGTTGGCTGGG
ACGGAGGAGGCTCCTGGGGAGTACTTTTACCAAGATGGCGTGCGCCTGAA
GCGGTACCGAGGAATGGGTTCGGTGGAGGCTATGGCCAAGGGGTCGGAAA
AGCGTTATTTCGCTTCGGGCGCCGTCGTCAAGGTCGCTCAGGGTGTGAGC
GGTGCAGTGACAGACCGGGGGTCCATGGCTCGTTATATCCCTTACTTGAC
CACGGGTGTGCGTCACGGTCTGCAAGATCTGGGCTCGGTCTCTTTGGCTG
ACCTCCACAAGCGACGGGATGCGGGTTTACTTCGGTTTGAGGTGCGCTCC
CCGGCGGCACAGCGCGAGGGTGGGGTACACGGTTTGCACATGCATGAGCG
TAAGCTGTTCGCATAA
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Synonyms
Publications