jgi.p|Nanoce1779_2|606547, mRNA_9359 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606547
Unique NamemRNA_9359
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length992
Alignment locationscaffold_35:202586..204329 -

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Properties
Property NameValue
TranscriptId606633
TrackFilteredModels2
ProteinId606547
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:202586..204329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606547gene_9359Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606547mRNA_9359-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9359CDS_9359Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9359 ID=mRNA_9359|Name=jgi.p|Nanoce1779_2|606547|organism=Nannochloropsis oceanica|type=mRNA|length=992bp
ACAGGCTTTCTTGTCTTTCCGCTATCAACACATGCACCCTCGCAGCTACA
GCCTCTTCCTTTTTCTTGTCCTGATCACGTTTGTCGCTCCCGCCGCGACT
TTTCTGTTGTCAACTGCGCCGGATTCCTTGACTTGCTGTGCGAATAGCAA
GAACTTCCAACGACAACAAATTAACACATTTGCTTCCATCAGCAGTGACA
GCAGCAGTATGAGCGAGATTAAGGTCGTTTCCCAACCTGACGAGGCAACC
TTGACAAGAATGGGCGTCAACAGCTGGCCCACATGGGGCTGCGACGTCAG
CAAATTTCCCTGGAGCTACGGGGATGCCGAGACATGCTACATCCTTCAGG
GCAGGGTGACGGTGACTCCCACCAGCGGGGGGAAGGCAGTTACTGTGGGT
AAAGGAGATCTGGTGACCTTCCCCGAAGGCATGAGCTGTGTCTGGGACGT
GACTGAGGCGATCAACAAGCGCTACACATTCCATTGAGTCAAGGTAACAT
TTCGTATCCCCCACAGCAGAGGGGGAGGGAGAGTAGGAGGATGGAGGGAA
GAGTGAGGAGGTGGGAAGAAGGAAGATATTTTCCATTCACGCCTTTAAGC
CTTATTGAGAAGGAGCCTCCCCCTTAAAGAAAAAGAAACCCCAACAGGCC
CCAGAGGCCGTTCCGGAAGGAATTAGGAAAAAGTCGCAGCAGCAACAACG
GCTGTGACAAATCAAAGATCGACAGACCGTGTCGTTTTCTCGCAGCCAGA
GCCACTATAGAAATCAGCGCGCGTGTGTGTGTGTACTCTCACTATCCCTT
GTTTCTTTGATCCTTTCCGTCTTACTCCTCCCTCTTTCGCCTTCGCCAGT
GGCCGACACGCCGACCTCCCTCCCGTCTCACAAGGAGACCGAGCAAGAGG
CCAGCGGACACTTTCTCCCTCCCTCCCTCCCTGAGCGCACATTATAAATA
TATAGACGTATGTACGTAATTGTATCGAAATTTATTTATCAC
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protein sequence of jgi.p|Nanoce1779_2|606547

>mRNA_9359-protein ID=mRNA_9359-protein|Name=jgi.p|Nanoce1779_2|606547|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MHPRSYSLFLFLVLITFVAPAATFLLSTAPDSLTCCANSKNFQRQQINTF
ASISSDSSSMSEIKVVSQPDEATLTRMGVNSWPTWGCDVSKFPWSYGDAE
TCYILQGRVTVTPTSGGKAVTVGKGDLVTFPEGMSCVWDVTEAINKRYTF
H*
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mRNA from alignment at scaffold_35:202586..204329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9359 ID=mRNA_9359|Name=jgi.p|Nanoce1779_2|606547|organism=Nannochloropsis oceanica|type=mRNA|length=1744bp|location=Sequence derived from alignment at scaffold_35:202586..204329- (Nannochloropsis oceanica)
ACAGGCTTTCTTGTCTTTCCGCTATCAACACATGCACCCTCGCAGCTACA
GCCTCTTCCTTTTTCTTGTCCTGATCACGTTTGTCGCTCCCGCCGCGACT
TTTCTGTTGTCAACTGCGCCGGATTCCTTGACTTGCTGTGCGAATAGCAA
GAACTTCCAACGACAACAAATTGTACGTCCCGGCCTCCAACCCTACCTCA
AATCCTCCCCCTCCCTGTATGATCGTGACCTTCCTACCTCCGGACATAAA
ATTGTCGCGCTCATCCCTCTGCATTGAGTCAGTCTCAAAGCAGTGCCTTT
CCCATGTACGCGTCTCATCCTTCTAACCCTCTTTTCCTCCTTTTCATGCT
CTCTACCCACAAGAACACATTTGCTTCCATCAGCAGTGACAGCAGCAGTA
TGAGCGAGATTAAGGTCGTTTCCCAACCTGACGAGGCAACCTTGACAAGA
ATGGTAAGATCAACGGGAAGGATGGTCGGGAAGATGAGGAATTGTTGCCA
TTGTGCCTTCGCTGAGATGGATTACAGAGAGATATTTTCCCAGAGAGGCT
GCTTGTTCATCTCCAATGCATATCTAGCCACTGCCTGCCGTGTAGAGTGT
GAATAGACTGATCCGCACCGCAAATAGCGTAATCTCGGTATGGCTTCGTC
ATTATTGATTCATTGACTCGATTTTCGCTTCCCTTCTTCCCTTCCTCCTT
CCCTCCCTCCATTCCTCCCTCCTTCCCTTCCTTTTCTACAGGGCGTCAAC
AGCTGGCCCACATGGGGCTGCGACGTCAGCAAATTTCCCTGGAGCTACGG
GGATGCCGAGACATGGTAAATGAGTCTTTTTTTCTCTGAGTCGATGGTTC
TACGTTCCCTTCCTCCTTGACGCAATCTCCTCCCTCCCTCGCTCCCTCCC
CTCGCTCCCTCCTCCCCAGCTACATCCTTCAGGGCAGGGTGACGGTGACT
CCCACCAGCGGGGGGAAGGCAGTTACTGTGGGTAAAGGAGATCTGGTGAC
CTTCCCCGAAGGCATGAGCTGTGTCTGGTGCGTGAGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAAGGAGGGGAA
TAGCATTTGGCGCATTATCGCCTGATGCCTACGAATTCAATTTGTGAAAA
GCTTGCATCCTGCCCCCTCCCCCCTTACCCTCCCCCCGTCGACCAGGGAC
GTGACTGAGGCGATCAACAAGCGCTACACATTCCATTGAGTCAAGGTAAC
ATTTCGTATCCCCCACAGCAGAGGGGGAGGGAGAGTAGGAGGATGGAGGG
AAGAGTGAGGAGGTGGGAAGAAGGAAGATATTTTCCATTCACGCCTTTAA
GCCTTATTGAGAAGGAGCCTCCCCCTTAAAGAAAAAGAAACCCCAACAGG
CCCCAGAGGCCGTTCCGGAAGGAATTAGGAAAAAGTCGCAGCAGCAACAA
CGGCTGTGACAAATCAAAGATCGACAGACCGTGTCGTTTTCTCGCAGCCA
GAGCCACTATAGAAATCAGCGCGCGTGTGTGTGTGTACTCTCACTATCCC
TTGTTTCTTTGATCCTTTCCGTCTTACTCCTCCCTCTTTCGCCTTCGCCA
GTGGCCGACACGCCGACCTCCCTCCCGTCTCACAAGGAGACCGAGCAAGA
GGCCAGCGGACACTTTCTCCCTCCCTCCCTCCCTGAGCGCACATTATAAA
TATATAGACGTATGTACGTAATTGTATCGAAATTTATTTATCAC
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Coding sequence (CDS) from alignment at scaffold_35:202586..204329-

>mRNA_9359 ID=mRNA_9359|Name=jgi.p|Nanoce1779_2|606547|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_35:202586..204329- (Nannochloropsis oceanica)
GGACGTGACTGAGGCGATCAACAAGCGCTACACATTCCATTGACTACATC
CTTCAGGGCAGGGTGACGGTGACTCCCACCAGCGGGGGGAAGGCAGTTAC
TGTGGGTAAAGGAGATCTGGTGACCTTCCCCGAAGGCATGAGCTGTGTCT
GGGCGTCAACAGCTGGCCCACATGGGGCTGCGACGTCAGCAAATTTCCCT
GGAGCTACGGGGATGCCGAGACATGAACACATTTGCTTCCATCAGCAGTG
ACAGCAGCAGTATGAGCGAGATTAAGGTCGTTTCCCAACCTGACGAGGCA
ACCTTGACAAGAATGATGCACCCTCGCAGCTACAGCCTCTTCCTTTTTCT
TGTCCTGATCACGTTTGTCGCTCCCGCCGCGACTTTTCTGTTGTCAACTG
CGCCGGATTCCTTGACTTGCTGTGCGAATAGCAAGAACTTCCAACGACAA
CAAATTGGACGTGACTGAGGCGATCAACAAGCGCTACACATTCCATTGAC
TACATCCTTCAGGGCAGGGTGACGGTGACTCCCACCAGCGGGGGGAAGGC
AGTTACTGTGGGTAAAGGAGATCTGGTGACCTTCCCCGAAGGCATGAGCT
GTGTCTGGGCGTCAACAGCTGGCCCACATGGGGCTGCGACGTCAGCAAAT
TTCCCTGGAGCTACGGGGATGCCGAGACATGAACACATTTGCTTCCATCA
GCAGTGACAGCAGCAGTATGAGCGAGATTAAGGTCGTTTCCCAACCTGAC
GAGGCAACCTTGACAAGAATGATGCACCCTCGCAGCTACAGCCTCTTCCT
TTTTCTTGTCCTGATCACGTTTGTCGCTCCCGCCGCGACTTTTCTGTTGT
CAACTGCGCCGGATTCCTTGACTTGCTGTGCGAATAGCAAGAACTTCCAA
CGACAACAAATTGGACGTGACTGAGGCGATCAACAAGCGCTACACATTCC
ATTGACTACATCCTTCAGGGCAGGGTGACGGTGACTCCCACCAGCGGGGG
GAAGGCAGTTACTGTGGGTAAAGGAGATCTGGTGACCTTCCCCGAAGGCA
TGAGCTGTGTCTGGGCGTCAACAGCTGGCCCACATGGGGCTGCGACGTCA
GCAAATTTCCCTGGAGCTACGGGGATGCCGAGACATGAACACATTTGCTT
CCATCAGCAGTGACAGCAGCAGTATGAGCGAGATTAAGGTCGTTTCCCAA
CCTGACGAGGCAACCTTGACAAGAATGATGCACCCTCGCAGCTACAGCCT
CTTCCTTTTTCTTGTCCTGATCACGTTTGTCGCTCCCGCCGCGACTTTTC
TGTTGTCAACTGCGCCGGATTCCTTGACTTGCTGTGCGAATAGCAAGAAC
TTCCAACGACAACAAATTGGACGTGACTGAGGCGATCAACAAGCGCTACA
CATTCCATTGACTACATCCTTCAGGGCAGGGTGACGGTGACTCCCACCAG
CGGGGGGAAGGCAGTTACTGTGGGTAAAGGAGATCTGGTGACCTTCCCCG
AAGGCATGAGCTGTGTCTGGGCGTCAACAGCTGGCCCACATGGGGCTGCG
ACGTCAGCAAATTTCCCTGGAGCTACGGGGATGCCGAGACATGAACACAT
TTGCTTCCATCAGCAGTGACAGCAGCAGTATGAGCGAGATTAAGGTCGTT
TCCCAACCTGACGAGGCAACCTTGACAAGAATGATGCACCCTCGCAGCTA
CAGCCTCTTCCTTTTTCTTGTCCTGATCACGTTTGTCGCTCCCGCCGCGA
CTTTTCTGTTGTCAACTGCGCCGGATTCCTTGACTTGCTGTGCGAATAGC
AAGAACTTCCAACGACAACAAATTGGACGTGACTGAGGCGATCAACAAGC
GCTACACATTCCATTGACTACATCCTTCAGGGCAGGGTGACGGTGACTCC
CACCAGCGGGGGGAAGGCAGTTACTGTGGGTAAAGGAGATCTGGTGACCT
TCCCCGAAGGCATGAGCTGTGTCTGGGCGTCAACAGCTGGCCCACATGGG
GCTGCGACGTCAGCAAATTTCCCTGGAGCTACGGGGATGCCGAGACATGA
ACACATTTGCTTCCATCAGCAGTGACAGCAGCAGTATGAGCGAGATTAAG
GTCGTTTCCCAACCTGACGAGGCAACCTTGACAAGAATGATGCACCCTCG
CAGCTACAGCCTCTTCCTTTTTCTTGTCCTGATCACGTTTGTCGCTCCCG
CCGCGACTTTTCTGTTGTCAACTGCGCCGGATTCCTTGACTTGCTGTGCG
AATAGCAAGAACTTCCAACGACAACAAATT
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Synonyms
Publications