jgi.p|Nanoce1779_2|606531, mRNA_9356 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606531
Unique NamemRNA_9356
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length559
Alignment locationscaffold_35:189718..190276 -

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Properties
Property NameValue
TranscriptId606617
TrackFilteredModels2
ProteinId606531
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:189718..190276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606531gene_9356Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606531mRNA_9356-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9356CDS_9356Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9356 ID=mRNA_9356|Name=jgi.p|Nanoce1779_2|606531|organism=Nannochloropsis oceanica|type=mRNA|length=559bp
CCGCCATGTCCATCCCCCGCACCCTCTCCTCCCTCCACCTCCTCCTTCCT
CCGTCTGCCTCCTGTCCTCCCGATCTCTCAGCCCCATCTCCCACCCAGCA
GCTCCTCCGTCCTTTGTTACCGCCGCTTTTGGGGCAAGGCATACGTCCAA
TGCTGGGTTCCACAACGCACATACCCCTCCCTCTTTCACTCCCTCCTTCC
TCTCCATTGGGACAGCAACGAAGGATGCCAAGGCCGAGGAGGAAGGAGGC
AGACCTAACGCCCCCTCTACCCTCTCTCCCGTCACCCAGGAAGAATAAAA
CGACGAGGAAGACGAAGCAAGGTGGGACAGGCTGAGGGAGGGAGGGAAGG
GGAGGGCAAGGGTGAGGCACCGGGACGACTGGAGAAGGGACAGGGAGAAG
GCTGCATCCAGAGGAAAAGATGACGGAAAGGACGCGGACGGACAGGACAC
GGCTGGACTGCCCTTGACTTTCTTGCGGTTTATCATGCCCTTTAAGCGGG
GCAGCAGAGTGGGGGGAGGTTGGACGTCACCCGGGCGGCATGGTGGTGAT
CCGGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|606531

>mRNA_9356-protein ID=mRNA_9356-protein|Name=jgi.p|Nanoce1779_2|606531|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MSIPRTLSSLHLLLPPSASCPPDLSAPSPTQQLLRPLLPPLLGQGIRPML
GSTTHIPLPLSLPPSSPLGQQRRMPRPRRKEADLTPPLPSLPSPRKNKTT
RKTKQGGTG*
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mRNA from alignment at scaffold_35:189718..190276-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9356 ID=mRNA_9356|Name=jgi.p|Nanoce1779_2|606531|organism=Nannochloropsis oceanica|type=mRNA|length=559bp|location=Sequence derived from alignment at scaffold_35:189718..190276- (Nannochloropsis oceanica)
CCGCCATGTCCATCCCCCGCACCCTCTCCTCCCTCCACCTCCTCCTTCCT
CCGTCTGCCTCCTGTCCTCCCGATCTCTCAGCCCCATCTCCCACCCAGCA
GCTCCTCCGTCCTTTGTTACCGCCGCTTTTGGGGCAAGGCATACGTCCAA
TGCTGGGTTCCACAACGCACATACCCCTCCCTCTTTCACTCCCTCCTTCC
TCTCCATTGGGACAGCAACGAAGGATGCCAAGGCCGAGGAGGAAGGAGGC
AGACCTAACGCCCCCTCTACCCTCTCTCCCGTCACCCAGGAAGAATAAAA
CGACGAGGAAGACGAAGCAAGGTGGGACAGGCTGAGGGAGGGAGGGAAGG
GGAGGGCAAGGGTGAGGCACCGGGACGACTGGAGAAGGGACAGGGAGAAG
GCTGCATCCAGAGGAAAAGATGACGGAAAGGACGCGGACGGACAGGACAC
GGCTGGACTGCCCTTGACTTTCTTGCGGTTTATCATGCCCTTTAAGCGGG
GCAGCAGAGTGGGGGGAGGTTGGACGTCACCCGGGCGGCATGGTGGTGAT
CCGGCCTGT
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Coding sequence (CDS) from alignment at scaffold_35:189718..190276-

>mRNA_9356 ID=mRNA_9356|Name=jgi.p|Nanoce1779_2|606531|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_35:189718..190276- (Nannochloropsis oceanica)
ATGTCCATCCCCCGCACCCTCTCCTCCCTCCACCTCCTCCTTCCTCCGTC
TGCCTCCTGTCCTCCCGATCTCTCAGCCCCATCTCCCACCCAGCAGCTCC
TCCGTCCTTTGTTACCGCCGCTTTTGGGGCAAGGCATACGTCCAATGCTG
GGTTCCACAACGCACATACCCCTCCCTCTTTCACTCCCTCCTTCCTCTCC
ATTGGGACAGCAACGAAGGATGCCAAGGCCGAGGAGGAAGGAGGCAGACC
TAACGCCCCCTCTACCCTCTCTCCCGTCACCCAGGAAGAATAAAACGACG
AGGAAGACGAAGCAAGGTGGGACAGGCTGA
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Synonyms
Publications