jgi.p|Nanoce1779_2|642537, mRNA_9355 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|642537
Unique NamemRNA_9355
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length477
Alignment locationscaffold_35:183669..184894 +

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Properties
Property NameValue
TranscriptId642623
TrackFilteredModels2
ProteinId642537
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:183669..184894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642537gene_9355Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|642537mRNA_9355-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9355CDS_9355Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9355 ID=mRNA_9355|Name=jgi.p|Nanoce1779_2|642537|organism=Nannochloropsis oceanica|type=mRNA|length=477bp
ATGCCCGTGCAGCAGGCCAAAAAGAAGGGCGGCGCGGCAGGTCCTCAGAG
CTTGAGTGGGAACTCGTTGAGAGGGTTTACAAAGGTCCTTGAAGTGGGCA
CGGAGCTAGCCGAGGCTGAAGGGAGCCAGAAGGCCGTGGGGCCTTTGAAG
GACGACAAGTATTTGCTGCTCATAAGAAGGAAGGCAGGCGCGATTAGTGC
CATTGACGCTAATTGCGGTCGGTGCAAATTCCCCCTCCTAAAGGGCAAGA
TCTCTGAGGACCCCACCATCGAAGACGAGGACGATAAGGGCATCATCACC
TGCCCGCTTTGCGCCGTCAGATTCTCTCTTGCCACTGGCCTTGTCACTGG
AGCAAAAGCCGACGGGGTGATCCAGCAGGTGTCGGCCTCCTTCTTCAGCA
AGCAAATCGCCTCGGGCCTCAAGACCTACAGCACGAGCGCCGCCACCGAC
GGCGGAGTGTATGTCAAGCTGAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|642537

>mRNA_9355-protein ID=mRNA_9355-protein|Name=jgi.p|Nanoce1779_2|642537|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MPVQQAKKKGGAAGPQSLSGNSLRGFTKVLEVGTELAEAEGSQKAVGPLK
DDKYLLLIRRKAGAISAIDANCGRCKFPLLKGKISEDPTIEDEDDKGIIT
CPLCAVRFSLATGLVTGAKADGVIQQVSASFFSKQIASGLKTYSTSAATD
GGVYVKLR*
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mRNA from alignment at scaffold_35:183669..184894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9355 ID=mRNA_9355|Name=jgi.p|Nanoce1779_2|642537|organism=Nannochloropsis oceanica|type=mRNA|length=1226bp|location=Sequence derived from alignment at scaffold_35:183669..184894+ (Nannochloropsis oceanica)
ATGCCCGTGCAGGTAATTATGCATTTTCTCTCAGGAACCCGATCTCCCGC
TCTTTCTGTCCTCACCTGTCACCTTCCTTTTTTCTTCCCTTTCTTGTAGC
AGGCCAAAAAGAAGGGCGGCGCGGCAGGTCCTCAGAGCTTGAGTGGGAAC
TCGTTGAGAGGGTTTACAAAGGTACAAGAAATTGCTCCATTAACTTGCAA
TCATAATTGATATCAAGCCTCCCCTTCAGTGCATGGATTGATCTCGCACC
TTTCCTCCCACCCTTCCTCCCGCATCAGGTCCTTGAAGTGGGCACGGAGC
TAGCCGAGGCTGAAGGGAGCCAGAAGGCCGTGGGGCCTTTGAAGGACGAC
AAGTATTTGCTGCTCATAAGAAGGAAGGCAGGCGCGATTAGTGCCATTGA
CGCTAATTGCGGTACGTCGGAGCAGGGAGAGAGGAGGGAGAGAAGGAGGA
CAGGGTTATGAGGCATAGGGGGGTTGTGCCGACGATGGAGGAGAAAAGCG
GGCAGAGACCTTTTCCTCGACATCAAAACAAGGATGAGGATGATTTTTTC
CATCTCAACTTATTTTTCATCCTTCCTTCCACATTACCTCTCTCCCTTCT
CCATTCCTCCGTCAGGTCGGTGCAAATTCCCCCTCCTAAAGGGCAAGATC
TCTGAGGACCCCACCATCGAAGACGAGGACGATAAGGGCATCATCACCTG
GTACCTCTCTCCCTCCCTCCCTCCTCCTTCTCTCTTTTCCTCCCTCGTCT
TCTCTTCCCTTGTCTCCTGGCGTTCTTAGCTTTTGATGCCTCGGACCATT
CACCCTATACCCTCCCTCCCTCCTCCCTTTTCCCCCTCCCCGTAGCCCGC
TTTGCGCCGTCAGATTCTCTCTTGCCACTGGCCTTGTCACTGGAGCAAAA
GTAAGGATATATGCCTCAAAATGAGGACGGAGGAGAAGCGGAAAGGGAAA
AGGAGGGAAGGAAGCAGAGATGGAAGGATGAGACAAAGGGCGTGCGTTTG
AAATTCAAATCACGGGAGATAGGCGTTCACATTCTCTAATTCCTCTCTGT
CTCCCTCCCTCTCTGCCTCCCTCCCTCCCTCCCTCCCTCCCTACCGTCCT
CCCCAGGCCGACGGGGTGATCCAGCAGGTGTCGGCCTCCTTCTTCAGCAA
GCAAATCGCCTCGGGCCTCAAGACCTACAGCACGAGCGCCGCCACCGACG
GCGGAGTGTATGTCAAGCTGAGGTAG
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Coding sequence (CDS) from alignment at scaffold_35:183669..184894+

>mRNA_9355 ID=mRNA_9355|Name=jgi.p|Nanoce1779_2|642537|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_35:183669..184894+ (Nannochloropsis oceanica)
ATGCCCGTGCAGCAGGCCAAAAAGAAGGGCGGCGCGGCAGGTCCTCAGAG
CTTGAGTGGGAACTCGTTGAGAGGGTTTACAAAGGTCCTTGAAGTGGGCA
CGGAGCTAGCCGAGGCTGAAGGGAGCCAGAAGGCCGTGGGGCCTTTGAAG
GACGACAAGTATTTGCTGCTCATAAGAAGGAAGGCAGGCGCGATTAGTGC
CATTGACGCTAATTGCGGTCGGTGCAAATTCCCCCTCCTAAAGGGCAAGA
TCTCTGAGGACCCCACCATCGAAGACGAGGACGATAAGGGCATCATCACC
TGCCCGCTTTGCGCCGTCAGATTCTCTCTTGCCACTGGCCTTGTCACTGG
AGCAAAAGCCGACGGGGTGATCCAGCAGGTGTCGGCCTCCTTCTTCAGCA
AGCAAATCGCCTCGGGCCTCAAGACCTACAGCACGAGCGCCGCCACCGAC
GGCGGAGTGTATGTCAAGCTGAGGTAGATGCCCGTGCAGCAGGCCAAAAA
GAAGGGCGGCGCGGCAGGTCCTCAGAGCTTGAGTGGGAACTCGTTGAGAG
GGTTTACAAAGGTCCTTGAAGTGGGCACGGAGCTAGCCGAGGCTGAAGGG
AGCCAGAAGGCCGTGGGGCCTTTGAAGGACGACAAGTATTTGCTGCTCAT
AAGAAGGAAGGCAGGCGCGATTAGTGCCATTGACGCTAATTGCGGTCGGT
GCAAATTCCCCCTCCTAAAGGGCAAGATCTCTGAGGACCCCACCATCGAA
GACGAGGACGATAAGGGCATCATCACCTGCCCGCTTTGCGCCGTCAGATT
CTCTCTTGCCACTGGCCTTGTCACTGGAGCAAAAGCCGACGGGGTGATCC
AGCAGGTGTCGGCCTCCTTCTTCAGCAAGCAAATCGCCTCGGGCCTCAAG
ACCTACAGCACGAGCGCCGCCACCGACGGCGGAGTGTATGTCAAGCTGAG
GTAGATGCCCGTGCAGCAGGCCAAAAAGAAGGGCGGCGCGGCAGGTCCTC
AGAGCTTGAGTGGGAACTCGTTGAGAGGGTTTACAAAGGTCCTTGAAGTG
GGCACGGAGCTAGCCGAGGCTGAAGGGAGCCAGAAGGCCGTGGGGCCTTT
GAAGGACGACAAGTATTTGCTGCTCATAAGAAGGAAGGCAGGCGCGATTA
GTGCCATTGACGCTAATTGCGGTCGGTGCAAATTCCCCCTCCTAAAGGGC
AAGATCTCTGAGGACCCCACCATCGAAGACGAGGACGATAAGGGCATCAT
CACCTGCCCGCTTTGCGCCGTCAGATTCTCTCTTGCCACTGGCCTTGTCA
CTGGAGCAAAAGCCGACGGGGTGATCCAGCAGGTGTCGGCCTCCTTCTTC
AGCAAGCAAATCGCCTCGGGCCTCAAGACCTACAGCACGAGCGCCGCCAC
CGACGGCGGAGTGTATGTCAAGCTGAGGTAGATGCCCGTGCAGCAGGCCA
AAAAGAAGGGCGGCGCGGCAGGTCCTCAGAGCTTGAGTGGGAACTCGTTG
AGAGGGTTTACAAAGGTCCTTGAAGTGGGCACGGAGCTAGCCGAGGCTGA
AGGGAGCCAGAAGGCCGTGGGGCCTTTGAAGGACGACAAGTATTTGCTGC
TCATAAGAAGGAAGGCAGGCGCGATTAGTGCCATTGACGCTAATTGCGGT
CGGTGCAAATTCCCCCTCCTAAAGGGCAAGATCTCTGAGGACCCCACCAT
CGAAGACGAGGACGATAAGGGCATCATCACCTGCCCGCTTTGCGCCGTCA
GATTCTCTCTTGCCACTGGCCTTGTCACTGGAGCAAAAGCCGACGGGGTG
ATCCAGCAGGTGTCGGCCTCCTTCTTCAGCAAGCAAATCGCCTCGGGCCT
CAAGACCTACAGCACGAGCGCCGCCACCGACGGCGGAGTGTATGTCAAGC
TGAGGTAGATGCCCGTGCAGCAGGCCAAAAAGAAGGGCGGCGCGGCAGGT
CCTCAGAGCTTGAGTGGGAACTCGTTGAGAGGGTTTACAAAGGTCCTTGA
AGTGGGCACGGAGCTAGCCGAGGCTGAAGGGAGCCAGAAGGCCGTGGGGC
CTTTGAAGGACGACAAGTATTTGCTGCTCATAAGAAGGAAGGCAGGCGCG
ATTAGTGCCATTGACGCTAATTGCGGTCGGTGCAAATTCCCCCTCCTAAA
GGGCAAGATCTCTGAGGACCCCACCATCGAAGACGAGGACGATAAGGGCA
TCATCACCTGCCCGCTTTGCGCCGTCAGATTCTCTCTTGCCACTGGCCTT
GTCACTGGAGCAAAAGCCGACGGGGTGATCCAGCAGGTGTCGGCCTCCTT
CTTCAGCAAGCAAATCGCCTCGGGCCTCAAGACCTACAGCACGAGCGCCG
CCACCGACGGCGGAGTGTATGTCAAGCTGAGGTAGATGCCCGTGCAGCAG
GCCAAAAAGAAGGGCGGCGCGGCAGGTCCTCAGAGCTTGAGTGGGAACTC
GTTGAGAGGGTTTACAAAGGTCCTTGAAGTGGGCACGGAGCTAGCCGAGG
CTGAAGGGAGCCAGAAGGCCGTGGGGCCTTTGAAGGACGACAAGTATTTG
CTGCTCATAAGAAGGAAGGCAGGCGCGATTAGTGCCATTGACGCTAATTG
CGGTCGGTGCAAATTCCCCCTCCTAAAGGGCAAGATCTCTGAGGACCCCA
CCATCGAAGACGAGGACGATAAGGGCATCATCACCTGCCCGCTTTGCGCC
GTCAGATTCTCTCTTGCCACTGGCCTTGTCACTGGAGCAAAAGCCGACGG
GGTGATCCAGCAGGTGTCGGCCTCCTTCTTCAGCAAGCAAATCGCCTCGG
GCCTCAAGACCTACAGCACGAGCGCCGCCACCGACGGCGGAGTGTATGTC
AAGCTGAGGTAG
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Synonyms
Publications