jgi.p|Nanoce1779_2|674074, mRNA_9354 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674074
Unique NamemRNA_9354
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_35:178907..180576 -

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Properties
Property NameValue
TranscriptId674160
TrackFilteredModels2
ProteinId674074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:178907..180576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674074gene_9354Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674074mRNA_9354-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9354CDS_9354Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Nanoce1779_2|674074|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
CAGGACAAGGTCTTCGCGTAGACGAAAGGGAGGGCGCAAAGGAGGGCAAG
CCAGCTTCGACACACAAGGTGCTATTATGGACCTGTGGAAATCGAGAGGA
CAGATCGCGTGGATGAGGGAGGATGCTCACTGATGATGCGAGCACACACG
ATGAGCTTGTCCCTGGTCGCCTTCAAGCGCGCCTTGCGCCCGGCGGCTGC
TACGTGCGCCCGCCGCGCCGGCCCTAGTCGATGCCTCGCCGGCGCACCCC
AGGGCCACGAGTCGGAGCACCAGGAGCAGGCCTACATCAACCCCAAGTGG
TTCGCGGGCTTGGAGGAAGGCGTGCCTGTCGAGCACCCCTTGAAGATGGG
TCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAACGCCCCTACGGCCGAGG
AGTACGAGAGTGGAAAGGTTAAGGTGCCCATCGTCGTAGATTCTCTGGAA
TGGACTCTGTCTTCCCCCCCTCCCTTGCACCAGTTTGACGAGCCCCCTAT
TATCGTAGAGTTCCCTGAGGACAACCACTAAGCGTTCGACTAAGCCGGCG
ATACGAAGCATTATGGATTAACAGCGTCATCAAAGCCACCAGACCCAGAA
GAGTTACGGCCTCCTCTCCACCCTCCCGCCGTCCTGCGGTTCGAGTGCGG
GTGCGATAAATGGCGGTGGGAGGGTGGATCCGGGTATGTGTCATTATTTT
TGGGAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGCAATGAGAGAGCGAA
TACTGAAATTGAGGAACTTACAGGCGGGGGAAGGGAGGGGCGATGAGTGC
GAGGAGGGGTAAGAAGGGACGT
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protein sequence of jgi.p|Nanoce1779_2|674074

>mRNA_9354-protein ID=mRNA_9354-protein|Name=jgi.p|Nanoce1779_2|674074|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MMRAHTMSLSLVAFKRALRPAAATCARRAGPSRCLAGAPQGHESEHQEQA
YINPKWFAGLEEGVPVEHPLKMGLLFPPKLTAKNAPTAEEYESGKVKVPI
VVDSLEWTLSSPPPLHQFDEPPIIVEFPEDNH*
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mRNA from alignment at scaffold_35:178907..180576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Nanoce1779_2|674074|organism=Nannochloropsis oceanica|type=mRNA|length=1670bp|location=Sequence derived from alignment at scaffold_35:178907..180576- (Nannochloropsis oceanica)
CAGGACAAGGTCTTCGCGTAGACGAAAGGGAGGGCGCAAAGGAGGGCAAG
CCAGCTTCGACACACAAGGTGCTATTATGGACCTGTGGAAATCGAGAGGA
CAGATCGCGTGGATGAGGGAGGATGCTCACTGATGATGCGAGGTGCGATG
GCACTTGGAAAGCAAGCGCTCACGCTTACTCACACAGGACCTCCCTCTCT
GCGTGCCTGTTGTCAATATGTGTTACTTTTATGGCGGGTGGTTTTAAGCA
AGGCGCGGCCATGCAAGCAAGATGACAAAGGAAAGACTGATGATCAACCA
ATCCGCTACATCCTCCCTCCCTCCCCTACCCCAAAATACTCCTGATACAA
TGCAGCACACACGATGAGCTTGTCCCTGGTCGCCTTCAAGCGCGCCTTGC
GCCCGGCGGCTGCTACGTGCGGTCAGTATTGCGAGGGAGAAAGGGAGGCA
GGGAGAGAGGAAGGGAGGCGAGGGAAGGAGGGAGGGGATGAGGGAGGGTA
AATGCATTTCTCATACCCGGTGGGTTATCTATCCACCACGCCCTCACGGC
GGTGGCCAGCCGCTACGTGCTATCGAGTTACCAAACCTCATGGCATCGTG
GGCGTGGAAATCACTCACTCATCCTACATCTCTCTCCTTCCCTTGCTTCC
ACCGTCCTCTGTGCAGCCCGCCGCGCCGGCCCTAGTCGATGCCTCGCCGG
CGCACCCCAGGGCCACGAGTCGGAGCACCAGGAGCAGGCCTACATCAACC
CCAAGTGGTTCGCGGGCTTGGAGGAAGGCGTGCCTGTCGAGCACCCCTTG
AAGGTTGGAGAAAGGGAGGGAGAGAGGGAGGCAGAGAAGTAATGGAAGAT
AATGCGGTGGAGAAAGGCTGTCCAAGGAGGGAAGAATATAGTTGGGATGT
AATTTCATGGCTGTCGTGTGAGAGCACCATCACACCATGCTGAAGCAAAC
ACTCACAATTTCCCCTCCATCCTTGCGTCTCTCCTCTTTCCTCGAAATAG
ATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAACGCCCCTACGGC
CGAGGAGTACGAGAGTGGAAAGGTAGGTTGCCGCACAGAAGGGGAATCAC
AGGCTGGAGAGAGGCAGAGAACGATGGAAGCCACTTGGAAGTGATCGATT
CGGACTTCCTTTGTCTCAGTCCTGCTATTATGAGTCTTTCTCTGTGCCTA
TTACATCACATCTGATCACTCACTTCTCCCCTCCCTCCCACCCTCCCTCC
CTCCCTCACATCTAGGTTAAGGTGCCCATCGTCGTAGATTCTCTGGAATG
GACTCTGTCTTCCCCCCCTCCCTTGCACCAGTTTGACGAGCCCCCTATTA
TCGTAGAGTTCCCTGAGGACAACCACTAAGCGTTCGACTAAGCCGGCGAT
ACGAAGCATTATGGATTAACAGCGTCATCAAAGCCACCAGACCCAGAAGA
GTTACGGCCTCCTCTCCACCCTCCCGCCGTCCTGCGGTTCGAGTGCGGGT
GCGATAAATGGCGGTGGGAGGGTGGATCCGGGTATGTGTCATTATTTTTG
GGAGGCAGGGAGGGAGGGAGGGAGGGAGGGAGGCAATGAGAGAGCGAATA
CTGAAATTGAGGAACTTACAGGCGGGGGAAGGGAGGGGCGATGAGTGCGA
GGAGGGGTAAGAAGGGACGT
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Coding sequence (CDS) from alignment at scaffold_35:178907..180576-

>mRNA_9354 ID=mRNA_9354|Name=jgi.p|Nanoce1779_2|674074|organism=Nannochloropsis oceanica|type=CDS|length=1995bp|location=Sequence derived from alignment at scaffold_35:178907..180576- (Nannochloropsis oceanica)
GTTAAGGTGCCCATCGTCGTAGATTCTCTGGAATGGACTCTGTCTTCCCC
CCCTCCCTTGCACCAGTTTGACGAGCCCCCTATTATCGTAGAGTTCCCTG
AGGACAACCACTAAATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAG
AACGCCCCTACGGCCGAGGAGTACGAGAGTGGAAAGCCCGCCGCGCCGGC
CCTAGTCGATGCCTCGCCGGCGCACCCCAGGGCCACGAGTCGGAGCACCA
GGAGCAGGCCTACATCAACCCCAAGTGGTTCGCGGGCTTGGAGGAAGGCG
TGCCTGTCGAGCACCCCTTGAAGCACACACGATGAGCTTGTCCCTGGTCG
CCTTCAAGCGCGCCTTGCGCCCGGCGGCTGCTACGTGCGATGATGCGAGG
TTAAGGTGCCCATCGTCGTAGATTCTCTGGAATGGACTCTGTCTTCCCCC
CCTCCCTTGCACCAGTTTGACGAGCCCCCTATTATCGTAGAGTTCCCTGA
GGACAACCACTAAATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGA
ACGCCCCTACGGCCGAGGAGTACGAGAGTGGAAAGCCCGCCGCGCCGGCC
CTAGTCGATGCCTCGCCGGCGCACCCCAGGGCCACGAGTCGGAGCACCAG
GAGCAGGCCTACATCAACCCCAAGTGGTTCGCGGGCTTGGAGGAAGGCGT
GCCTGTCGAGCACCCCTTGAAGCACACACGATGAGCTTGTCCCTGGTCGC
CTTCAAGCGCGCCTTGCGCCCGGCGGCTGCTACGTGCGATGATGCGAGGT
TAAGGTGCCCATCGTCGTAGATTCTCTGGAATGGACTCTGTCTTCCCCCC
CTCCCTTGCACCAGTTTGACGAGCCCCCTATTATCGTAGAGTTCCCTGAG
GACAACCACTAAATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAA
CGCCCCTACGGCCGAGGAGTACGAGAGTGGAAAGCCCGCCGCGCCGGCCC
TAGTCGATGCCTCGCCGGCGCACCCCAGGGCCACGAGTCGGAGCACCAGG
AGCAGGCCTACATCAACCCCAAGTGGTTCGCGGGCTTGGAGGAAGGCGTG
CCTGTCGAGCACCCCTTGAAGCACACACGATGAGCTTGTCCCTGGTCGCC
TTCAAGCGCGCCTTGCGCCCGGCGGCTGCTACGTGCGATGATGCGAGGTT
AAGGTGCCCATCGTCGTAGATTCTCTGGAATGGACTCTGTCTTCCCCCCC
TCCCTTGCACCAGTTTGACGAGCCCCCTATTATCGTAGAGTTCCCTGAGG
ACAACCACTAAATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAAC
GCCCCTACGGCCGAGGAGTACGAGAGTGGAAAGCCCGCCGCGCCGGCCCT
AGTCGATGCCTCGCCGGCGCACCCCAGGGCCACGAGTCGGAGCACCAGGA
GCAGGCCTACATCAACCCCAAGTGGTTCGCGGGCTTGGAGGAAGGCGTGC
CTGTCGAGCACCCCTTGAAGCACACACGATGAGCTTGTCCCTGGTCGCCT
TCAAGCGCGCCTTGCGCCCGGCGGCTGCTACGTGCGATGATGCGAGGTTA
AGGTGCCCATCGTCGTAGATTCTCTGGAATGGACTCTGTCTTCCCCCCCT
CCCTTGCACCAGTTTGACGAGCCCCCTATTATCGTAGAGTTCCCTGAGGA
CAACCACTAAATGGGTCTGTTGTTCCCCCCCAAGCTGACGGCTAAGAACG
CCCCTACGGCCGAGGAGTACGAGAGTGGAAAGCCCGCCGCGCCGGCCCTA
GTCGATGCCTCGCCGGCGCACCCCAGGGCCACGAGTCGGAGCACCAGGAG
CAGGCCTACATCAACCCCAAGTGGTTCGCGGGCTTGGAGGAAGGCGTGCC
TGTCGAGCACCCCTTGAAGCACACACGATGAGCTTGTCCCTGGTCGCCTT
CAAGCGCGCCTTGCGCCCGGCGGCTGCTACGTGCGATGATGCGAG
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Synonyms
Publications