jgi.p|Nanoce1779_2|606518, mRNA_9353 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606518
Unique Name	mRNA_9353
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1907
Alignment location	scaffold_35:176981..178887 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606604
Track	FilteredModels2
ProteinId	606518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:176981..178887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606518	gene_9353	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606518	mRNA_9353-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9353	CDS_9353	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:176981..178887+
coding sequence from alignment at scaffold_35:176981..178887+

mRNA sequence

>mRNA_9353 ID=mRNA_9353|Name=jgi.p|Nanoce1779_2|606518|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp
GACTCGTTCTCCGGTCGCGCTCCTGGCCACGTCCCGTCCCCACCGTCACC
AATACCTCTAATTGGCCAGTCAAAAGAGCTTCACGGCTACCGCAACCGGG
CGCTGGAGTGGCTTACCATGTACTCTCGGCGCTTTGGGGGCAAGACGTGG
ACGTTCAAGGTCATGTTTCGTCCTCGCGTTTATGTCATTTTGAGCCCGGA
AAATGTGGAGTACATCCTCAAAACCAATTTTACAAACTACGGCAAGGGTC
CTATGTTCCGGTCACGCATGAAGGAGCTTCTTGGGGAAGGGATCTTCAAC
GTGGATGGATCACGGTGGTACGAGCAACGCAAGATATCGTCGCATCTCTT
TACGCACCGTAATTTCAAGCAGCGCATGCTCAACACCATCAACAAAGACG
TGCATGCGCTTGTGAATATTGTCGGACAAGCTGCAGATAAGGCCAAGGGC
AACACCAGTGGGGCGGCCGAGGTCAATTTCTCGCGTCTCTTTGCGCGCTA
CACTCTCGACGCCATTGGCGAGATAGCGTTTGGGGAAAATATTGGGGCAT
TGAAGGGCGAGAGTGTGGACTTTGTGACTTCATTTGACTACATCCAAAGC
TTCCTAAACGATCTAGTGCTCAAGCCTCCCGGGTACGCATTTTATTGCCG
ACACTTCACTCCTGAAGGCAAGCGCTACACCGAATGCCTGGCCACGCTCA
ACACGTACGTCCGACGCATGGTGGCGACAGCTAAGGACGAGACGACGTCC
GAGGAGCTTGTAGCCCGCGGCGATTTGCTGGCACTCTTTATGACGCGTAC
TGACTCGGACGGCAAGCCTTTCACTGAAGAATATCTACGAGACATTGTCG
TGAACATGACCATTGCTGGGCGCGACACGACAGCATACGCACTGGCTTGG
GCGCTGTACCTCCTGGCGACCCACCGGGAGGTGCAAATCAAGGCCTGCGC
TGAGGCTCAAGCTGCCTATGCTATTGCTGAGGACGAGGGCAAGGACCTGG
GCTATGAGGCTATTGATCGTTTGACATATCTTGACGCGGTTTTTACGGAG
GTTTTGCGGCTTTACCCCTCCGTGCCTAAGAACCCCAAATGCGTCTATCA
GGACGATGTTCTGCCCGACGGTACTCCTGTCCGAGCAGGCTCTTACGTCA
TGTATGTCCCGTATGTCATGGCGCGGTTACCGGAGCTCTGGGGACCGGAG
CCCGAGAAGTTTGATCCCGAGCGGCATTTGCAGGGACGCCACCGACCTTC
TCCCTACCTGTGGCCGGCTTTCCAGGCGGGACCTCGCACCTGCTTGGGGC
AAAAGCTGGCCTACATGGAAGCAAAAGCGGTGCTGTGTGCTTTGCTGGCG
AACTTTGAGTTTTCCCGTTCGGCTTCGGTGGCTACGCCGCGGCTAGTCCA
GAACGCACTCACCACATCAATGGAAGGTGAGGGGTTAGTGTTGGCCGTGA
AGCGAATCAACTCCAGGGGAGGAGATGAGCTGATGCTGAATCGAGCCATG
AATGAGAAAGAAGTGCCGCAATAGGGTTGAAAGAATAGGAAACATGCGTA
AGATGACAAAGAGGGAAATTGGAGAAAAAGTGATGGATACAGAGAAGAAA
AGAGCCAGATGAGATGACGCTCTGCACAGGATCGATAAATATTAGCCTGG
CCATAGTGACCTTAGATGTGGCTGGTTGAAGAAGACAAGATCAGGAATCC
AGAAGGCAAAAACGAAACAATCGAAATAATGTGACACAGTTTTCCTTAAA
CACGAAATAGTATATGAAGGAGAAAGGGGGTGTGATACGTAAGCAACCAT
AGAATAAAAGACTATAGGCACGTCAACACATTTCATCTTTTTTTAGACGA
AAAGAAAAAAAATCAGAAAAAAATGAGAGTGATTTTTCTTGCCCCGCAGC
ACACGAG

protein sequence of jgi.p|Nanoce1779_2|606518

>mRNA_9353-protein ID=mRNA_9353-protein|Name=jgi.p|Nanoce1779_2|606518|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MYSRRFGGKTWTFKVMFRPRVYVILSPENVEYILKTNFTNYGKGPMFRSR
MKELLGEGIFNVDGSRWYEQRKISSHLFTHRNFKQRMLNTINKDVHALVN
IVGQAADKAKGNTSGAAEVNFSRLFARYTLDAIGEIAFGENIGALKGESV
DFVTSFDYIQSFLNDLVLKPPGYAFYCRHFTPEGKRYTECLATLNTYVRR
MVATAKDETTSEELVARGDLLALFMTRTDSDGKPFTEEYLRDIVVNMTIA
GRDTTAYALAWALYLLATHREVQIKACAEAQAAYAIAEDEGKDLGYEAID
RLTYLDAVFTEVLRLYPSVPKNPKCVYQDDVLPDGTPVRAGSYVMYVPYV
MARLPELWGPEPEKFDPERHLQGRHRPSPYLWPAFQAGPRTCLGQKLAYM
EAKAVLCALLANFEFSRSASVATPRLVQNALTTSMEGEGLVLAVKRINSR
GGDELMLNRAMNEKEVPQ*

mRNA from alignment at scaffold_35:176981..178887+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9353 ID=mRNA_9353|Name=jgi.p|Nanoce1779_2|606518|organism=Nannochloropsis oceanica|type=mRNA|length=1907bp|location=Sequence derived from alignment at scaffold_35:176981..178887+ (Nannochloropsis oceanica)
GACTCGTTCTCCGGTCGCGCTCCTGGCCACGTCCCGTCCCCACCGTCACC
AATACCTCTAATTGGCCAGTCAAAAGAGCTTCACGGCTACCGCAACCGGG
CGCTGGAGTGGCTTACCATGTACTCTCGGCGCTTTGGGGGCAAGACGTGG
ACGTTCAAGGTCATGTTTCGTCCTCGCGTTTATGTCATTTTGAGCCCGGA
AAATGTGGAGTACATCCTCAAAACCAATTTTACAAACTACGGCAAGGGTC
CTATGTTCCGGTCACGCATGAAGGAGCTTCTTGGGGAAGGGATCTTCAAC
GTGGATGGATCACGGTGGTACGAGCAACGCAAGATATCGTCGCATCTCTT
TACGCACCGTAATTTCAAGCAGCGCATGCTCAACACCATCAACAAAGACG
TGCATGCGCTTGTGAATATTGTCGGACAAGCTGCAGATAAGGCCAAGGGC
AACACCAGTGGGGCGGCCGAGGTCAATTTCTCGCGTCTCTTTGCGCGCTA
CACTCTCGACGCCATTGGCGAGATAGCGTTTGGGGAAAATATTGGGGCAT
TGAAGGGCGAGAGTGTGGACTTTGTGACTTCATTTGACTACATCCAAAGC
TTCCTAAACGATCTAGTGCTCAAGCCTCCCGGGTACGCATTTTATTGCCG
ACACTTCACTCCTGAAGGCAAGCGCTACACCGAATGCCTGGCCACGCTCA
ACACGTACGTCCGACGCATGGTGGCGACAGCTAAGGACGAGACGACGTCC
GAGGAGCTTGTAGCCCGCGGCGATTTGCTGGCACTCTTTATGACGCGTAC
TGACTCGGACGGCAAGCCTTTCACTGAAGAATATCTACGAGACATTGTCG
TGAACATGACCATTGCTGGGCGCGACACGACAGCATACGCACTGGCTTGG
GCGCTGTACCTCCTGGCGACCCACCGGGAGGTGCAAATCAAGGCCTGCGC
TGAGGCTCAAGCTGCCTATGCTATTGCTGAGGACGAGGGCAAGGACCTGG
GCTATGAGGCTATTGATCGTTTGACATATCTTGACGCGGTTTTTACGGAG
GTTTTGCGGCTTTACCCCTCCGTGCCTAAGAACCCCAAATGCGTCTATCA
GGACGATGTTCTGCCCGACGGTACTCCTGTCCGAGCAGGCTCTTACGTCA
TGTATGTCCCGTATGTCATGGCGCGGTTACCGGAGCTCTGGGGACCGGAG
CCCGAGAAGTTTGATCCCGAGCGGCATTTGCAGGGACGCCACCGACCTTC
TCCCTACCTGTGGCCGGCTTTCCAGGCGGGACCTCGCACCTGCTTGGGGC
AAAAGCTGGCCTACATGGAAGCAAAAGCGGTGCTGTGTGCTTTGCTGGCG
AACTTTGAGTTTTCCCGTTCGGCTTCGGTGGCTACGCCGCGGCTAGTCCA
GAACGCACTCACCACATCAATGGAAGGTGAGGGGTTAGTGTTGGCCGTGA
AGCGAATCAACTCCAGGGGAGGAGATGAGCTGATGCTGAATCGAGCCATG
AATGAGAAAGAAGTGCCGCAATAGGGTTGAAAGAATAGGAAACATGCGTA
AGATGACAAAGAGGGAAATTGGAGAAAAAGTGATGGATACAGAGAAGAAA
AGAGCCAGATGAGATGACGCTCTGCACAGGATCGATAAATATTAGCCTGG
CCATAGTGACCTTAGATGTGGCTGGTTGAAGAAGACAAGATCAGGAATCC
AGAAGGCAAAAACGAAACAATCGAAATAATGTGACACAGTTTTCCTTAAA
CACGAAATAGTATATGAAGGAGAAAGGGGGTGTGATACGTAAGCAACCAT
AGAATAAAAGACTATAGGCACGTCAACACATTTCATCTTTTTTTAGACGA
AAAGAAAAAAAATCAGAAAAAAATGAGAGTGATTTTTCTTGCCCCGCAGC
ACACGAG

Coding sequence (CDS) from alignment at scaffold_35:176981..178887+

>mRNA_9353 ID=mRNA_9353|Name=jgi.p|Nanoce1779_2|606518|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_35:176981..178887+ (Nannochloropsis oceanica)
ATGTACTCTCGGCGCTTTGGGGGCAAGACGTGGACGTTCAAGGTCATGTT
TCGTCCTCGCGTTTATGTCATTTTGAGCCCGGAAAATGTGGAGTACATCC
TCAAAACCAATTTTACAAACTACGGCAAGGGTCCTATGTTCCGGTCACGC
ATGAAGGAGCTTCTTGGGGAAGGGATCTTCAACGTGGATGGATCACGGTG
GTACGAGCAACGCAAGATATCGTCGCATCTCTTTACGCACCGTAATTTCA
AGCAGCGCATGCTCAACACCATCAACAAAGACGTGCATGCGCTTGTGAAT
ATTGTCGGACAAGCTGCAGATAAGGCCAAGGGCAACACCAGTGGGGCGGC
CGAGGTCAATTTCTCGCGTCTCTTTGCGCGCTACACTCTCGACGCCATTG
GCGAGATAGCGTTTGGGGAAAATATTGGGGCATTGAAGGGCGAGAGTGTG
GACTTTGTGACTTCATTTGACTACATCCAAAGCTTCCTAAACGATCTAGT
GCTCAAGCCTCCCGGGTACGCATTTTATTGCCGACACTTCACTCCTGAAG
GCAAGCGCTACACCGAATGCCTGGCCACGCTCAACACGTACGTCCGACGC
ATGGTGGCGACAGCTAAGGACGAGACGACGTCCGAGGAGCTTGTAGCCCG
CGGCGATTTGCTGGCACTCTTTATGACGCGTACTGACTCGGACGGCAAGC
CTTTCACTGAAGAATATCTACGAGACATTGTCGTGAACATGACCATTGCT
GGGCGCGACACGACAGCATACGCACTGGCTTGGGCGCTGTACCTCCTGGC
GACCCACCGGGAGGTGCAAATCAAGGCCTGCGCTGAGGCTCAAGCTGCCT
ATGCTATTGCTGAGGACGAGGGCAAGGACCTGGGCTATGAGGCTATTGAT
CGTTTGACATATCTTGACGCGGTTTTTACGGAGGTTTTGCGGCTTTACCC
CTCCGTGCCTAAGAACCCCAAATGCGTCTATCAGGACGATGTTCTGCCCG
ACGGTACTCCTGTCCGAGCAGGCTCTTACGTCATGTATGTCCCGTATGTC
ATGGCGCGGTTACCGGAGCTCTGGGGACCGGAGCCCGAGAAGTTTGATCC
CGAGCGGCATTTGCAGGGACGCCACCGACCTTCTCCCTACCTGTGGCCGG
CTTTCCAGGCGGGACCTCGCACCTGCTTGGGGCAAAAGCTGGCCTACATG
GAAGCAAAAGCGGTGCTGTGTGCTTTGCTGGCGAACTTTGAGTTTTCCCG
TTCGGCTTCGGTGGCTACGCCGCGGCTAGTCCAGAACGCACTCACCACAT
CAATGGAAGGTGAGGGGTTAGTGTTGGCCGTGAAGCGAATCAACTCCAGG
GGAGGAGATGAGCTGATGCTGAATCGAGCCATGAATGAGAAAGAAGTGCC
GCAATAG

Synonyms

Publications