jgi.p|Nanoce1779_2|606505, mRNA_9351 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606505
Unique Name	mRNA_9351
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1097
Alignment location	scaffold_35:171997..173627 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606591
Track	FilteredModels2
ProteinId	606505

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:171997..173627 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606505	gene_9351	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606505	mRNA_9351-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9351	CDS_9351	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:171997..173627+
coding sequence from alignment at scaffold_35:171997..173627+

mRNA sequence

>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Nanoce1779_2|606505|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp
CAGATCGAACCTTTAGGCGCAGCCCCACCCCACGACGTGCCAACTACTAC
CGCCAGCACCAGCACCAGCACCAGCTATCGTGTATGTGCCATCGTTCGTC
TTCTTCTCGTCTCATTTTTCCCTCGCTTTTCGGGCTTATCATCTTTAGCA
GCAGCACTCTATCCGCCTCGTGGACCAAAGACTTGGCCGACAAAGCCGGT
GCTTTCCTGGACAGCACGCTGCAAATGGGACAAGGCATGTCGGGCGGAGG
AAAACCTTTCGGAGAGGCGGCTGCACAAATCCTCCGCAACCCCGTGGGTA
GCAGGGCGTGCAAGGGGACCGGAAATGATATACAGGAGGTTGCCACCTTT
GCAGCAGGGTGTTTTTGGTCTGGTGGGTAGTTCTAGCGCTTTCCCGCTGG
AACTCTTCTCCTCTCTCTTTTTTTTCTCCCTTTCTCTTTCATTCATCTGT
CTTGTCTCAGTATATGCACGCGGAATACGCTGGGCTGACGCATTTAAGTA
CGGCGTTAATCAATGCCCATTCACCCTCTTTCCCTCCGTCCCCCCCCTCC
CTCTCTTCCTCGCAGTCGAACTCTCGTTCCAACGCGTCCCCGGGGTTTTG
AGCACCCGCGTCGGCTACATCGGGGGCCACACCCCCAACCCCACCTACCA
AGATGTCTGTACAGGTACCACAGGTCACGCCGAAGCCGTCGAAATCAAGT
TTGATCCCTCTATAGTATCCTACCCGGAGCTCTTGACCGTGCTGTGGGAC
CGACACGACCCCACGCAGAAAGACAGGCAGGGGAATGATAGAGGCACGCA
GTACCGGTCGGCTATCTTCTACCACTCCCTCGCCCAGAAGGAGCAGGCTG
AGGCCAGCATCAAGGAGGACGAGAAACACCGTCTCTCACCGATTGTCACG
CAGGTGGTGCCCGCGACCACGTTTTACGAAGCAGAGGAGTACCACCAACA
GTATCTTCAGAAAGGAGGGCAATGCGCGCGTAAACAAGACCTGACGCCCA
TCCGGTGCTACGGTTAGGTGGGACGGAAGGGAGGGAGGAAGGGAGGAGGG
GAGGGGGGGAGGGGGGGAAGGAGCGATAGAGGGAAGGGAGAAGAGTC

protein sequence of jgi.p|Nanoce1779_2|606505

>mRNA_9351-protein ID=mRNA_9351-protein|Name=jgi.p|Nanoce1779_2|606505|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MIYRRLPPLQQGVFGLVGSSSAFPLELFSSLFFFSLSLSFICLVSVYARG
IRWADAFKYGVNQCPFTLFPSVPPLPLFLAVELSFQRVPGVLSTRVGYIG
GHTPNPTYQDVCTGTTGHAEAVEIKFDPSIVSYPELLTVLWDRHDPTQKD
RQGNDRGTQYRSAIFYHSLAQKEQAEASIKEDEKHRLSPIVTQVVPATTF
YEAEEYHQQYLQKGGQCARKQDLTPIRCYG*

mRNA from alignment at scaffold_35:171997..173627+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Nanoce1779_2|606505|organism=Nannochloropsis oceanica|type=mRNA|length=1631bp|location=Sequence derived from alignment at scaffold_35:171997..173627+ (Nannochloropsis oceanica)
CAGATCGAACCTTTAGGCGCAGCCCCACCCCACGACGTGCCAACTACTAC
CGCCAGCACCAGCACCAGCACCAGCTATCGTGTATGTGCCATCGTTCGTC
TTCTTCTCGTCTCATTTTTCCCTCGCTTTTCGGGCTTATCATCTTTAGCA
GCAGCACTCTATCCGCCTCGTGGACCAAAGACTTGGCCGACAAAGCCGGT
GCTTTCCTGGACAGCACGCTGCAAATGGGACAAGGCATGTCGGGCGGAGG
AAAACCTTTCGGAGAGGCGGCTGCACAAATCCTCCGCAACCCCGTGGGTA
GCAGGGCGTGCAAGGGGACCGGAAATGATATACAGGAGGTTGCCACCTTT
GCAGCAGGGTGTTTTTGGTCTGGTGGGTAGTTCTAGCGCTTTCCCGCTGG
AACTCTTCTCCTCTCTCTTTTTTTTCTCCCTTTCTCTTTCATTCATCTGT
CTTGTCTCAGTATATGCACGCGGAATACGCTGGGCTGACGCATTTAAGTA
CGGCGTTAATCAATGCCCATTCACCCTCTTTCCCTCCGTCCCCCCCCTCC
CTCTCTTCCTCGCAGTCGAACTCTCGTTCCAACGCGTCCCCGGGGTTTTG
AGCACCCGCGTCGGCTACATCGGGGGCCACACCCCCAACCCCACCTACCA
AGATGTCTGTACAGGTACCACAGGTCACGCCGAAGCCGTCGAAATCAAGT
TTGATCCCTCTATAGGTACGAGGGAGGGAAGGAGGGAGGGAGGGAGGAAA
GGAGGGAAGGGAGATGGAAGTTAGGGAAGGGAGGGGGGGGAAAGACATGA
AGACTGATAAGGAAAGTAACGAAAATGCGCGGCCAACGCACTCATATACT
CCCTCCTCTCCCTCGGTTCTTTGGCAGTATCCTACCCGGAGCTCTTGACC
GTGCTGTGGGACCGACACGACCCCACGCAGAAAGACAGGCAGGGGAATGA
TAGAGGCACGCAGTACCGGTCGGCGTGAGTAGGGGGGATGGAAGGGAGGG
AGATGGCCACTTACGCTCGGGAAGACAAGAGGACGTTCATGTGCAGGGAA
GACAAATTGGAAATTGGAGAGGCGCTCTCAGCAGAACTTCGCCTCCACCT
TCACTCCTTCTCTCCTTCCCACCCTCACCTTCCCTCCCTCCCTTCCTCCC
TCCTTCCCTCTCTTCCTCGCAAAGTATCTTCTACCACTCCCTCGCCCAGA
AGGAGCAGGCTGAGGCCAGCATCAAGGAGGACGAGAAACACCGTCTCTCA
CCGATTGTCACGCAGGTGGTGCCCGCGACCACGTTTTACGAAGCAGAGGT
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGTAAGGG
GGCGTTACTCTCTACTAGCGAAAAGTGGAAAAGAAGGAGGTCTGAAAAGG
CAGGAGGAAAGGCGCCAAGGGCTCAATACATCTTCCCTCTTTTCCTCCCT
CCCTCACTCCCTCCCTCTAGGAGTACCACCAACAGTATCTTCAGAAAGGA
GGGCAATGCGCGCGTAAACAAGACCTGACGCCCATCCGGTGCTACGGTTA
GGTGGGACGGAAGGGAGGGAGGAAGGGAGGAGGGGAGGGGGGGAGGGGGG
GAAGGAGCGATAGAGGGAAGGGAGAAGAGTC

Coding sequence (CDS) from alignment at scaffold_35:171997..173627+

>mRNA_9351 ID=mRNA_9351|Name=jgi.p|Nanoce1779_2|606505|organism=Nannochloropsis oceanica|type=CDS|length=2772bp|location=Sequence derived from alignment at scaffold_35:171997..173627+ (Nannochloropsis oceanica)
ATGATATACAGGAGGTTGCCACCTTTGCAGCAGGGTGTTTTTGGTCTGGT
GGGTAGTTCTAGCGCTTTCCCGCTGGAACTCTTCTCCTCTCTCTTTTTTT
TCTCCCTTTCTCTTTCATTCATCTGTCTTGTCTCAGTATATGCACGCGGA
ATACGCTGGGCTGACGCATTTAAGTACGGCGTTAATCAATGCCCATTCAC
CCTCTTTCCCTCCGTCCCCCCCCTCCCTCTCTTCCTCGCAGTCGAACTCT
CGTTCCAACGCGTCCCCGGGGTTTTGAGCACCCGCGTCGGCTACATCGGG
GGCCACACCCCCAACCCCACCTACCAAGATGTCTGTACAGGTACCACAGG
TCACGCCGAAGCCGTCGAAATCAAGTTTGATCCCTCTATAGTATCCTACC
CGGAGCTCTTGACCGTGCTGTGGGACCGACACGACCCCACGCAGAAAGAC
AGGCAGGGGAATGATAGAGGCACGCAGTACCGGTCGGCTATCTTCTACCA
CTCCCTCGCCCAGAAGGAGCAGGCTGAGGCCAGCATCAAGGAGGACGAGA
AACACCGTCTCTCACCGATTGTCACGCAGGTGGTGCCCGCGACCACGTTT
TACGAAGCAGAGGAGTACCACCAACAGTATCTTCAGAAAGGAGGGCAATG
CGCGCGTAAACAAGACCTGACGCCCATCCGGTGCTACGGTTAGATGATAT
ACAGGAGGTTGCCACCTTTGCAGCAGGGTGTTTTTGGTCTGGTGGGTAGT
TCTAGCGCTTTCCCGCTGGAACTCTTCTCCTCTCTCTTTTTTTTCTCCCT
TTCTCTTTCATTCATCTGTCTTGTCTCAGTATATGCACGCGGAATACGCT
GGGCTGACGCATTTAAGTACGGCGTTAATCAATGCCCATTCACCCTCTTT
CCCTCCGTCCCCCCCCTCCCTCTCTTCCTCGCAGTCGAACTCTCGTTCCA
ACGCGTCCCCGGGGTTTTGAGCACCCGCGTCGGCTACATCGGGGGCCACA
CCCCCAACCCCACCTACCAAGATGTCTGTACAGGTACCACAGGTCACGCC
GAAGCCGTCGAAATCAAGTTTGATCCCTCTATAGTATCCTACCCGGAGCT
CTTGACCGTGCTGTGGGACCGACACGACCCCACGCAGAAAGACAGGCAGG
GGAATGATAGAGGCACGCAGTACCGGTCGGCTATCTTCTACCACTCCCTC
GCCCAGAAGGAGCAGGCTGAGGCCAGCATCAAGGAGGACGAGAAACACCG
TCTCTCACCGATTGTCACGCAGGTGGTGCCCGCGACCACGTTTTACGAAG
CAGAGGAGTACCACCAACAGTATCTTCAGAAAGGAGGGCAATGCGCGCGT
AAACAAGACCTGACGCCCATCCGGTGCTACGGTTAGATGATATACAGGAG
GTTGCCACCTTTGCAGCAGGGTGTTTTTGGTCTGGTGGGTAGTTCTAGCG
CTTTCCCGCTGGAACTCTTCTCCTCTCTCTTTTTTTTCTCCCTTTCTCTT
TCATTCATCTGTCTTGTCTCAGTATATGCACGCGGAATACGCTGGGCTGA
CGCATTTAAGTACGGCGTTAATCAATGCCCATTCACCCTCTTTCCCTCCG
TCCCCCCCCTCCCTCTCTTCCTCGCAGTCGAACTCTCGTTCCAACGCGTC
CCCGGGGTTTTGAGCACCCGCGTCGGCTACATCGGGGGCCACACCCCCAA
CCCCACCTACCAAGATGTCTGTACAGGTACCACAGGTCACGCCGAAGCCG
TCGAAATCAAGTTTGATCCCTCTATAGTATCCTACCCGGAGCTCTTGACC
GTGCTGTGGGACCGACACGACCCCACGCAGAAAGACAGGCAGGGGAATGA
TAGAGGCACGCAGTACCGGTCGGCTATCTTCTACCACTCCCTCGCCCAGA
AGGAGCAGGCTGAGGCCAGCATCAAGGAGGACGAGAAACACCGTCTCTCA
CCGATTGTCACGCAGGTGGTGCCCGCGACCACGTTTTACGAAGCAGAGGA
GTACCACCAACAGTATCTTCAGAAAGGAGGGCAATGCGCGCGTAAACAAG
ACCTGACGCCCATCCGGTGCTACGGTTAGATGATATACAGGAGGTTGCCA
CCTTTGCAGCAGGGTGTTTTTGGTCTGGTGGGTAGTTCTAGCGCTTTCCC
GCTGGAACTCTTCTCCTCTCTCTTTTTTTTCTCCCTTTCTCTTTCATTCA
TCTGTCTTGTCTCAGTATATGCACGCGGAATACGCTGGGCTGACGCATTT
AAGTACGGCGTTAATCAATGCCCATTCACCCTCTTTCCCTCCGTCCCCCC
CCTCCCTCTCTTCCTCGCAGTCGAACTCTCGTTCCAACGCGTCCCCGGGG
TTTTGAGCACCCGCGTCGGCTACATCGGGGGCCACACCCCCAACCCCACC
TACCAAGATGTCTGTACAGGTACCACAGGTCACGCCGAAGCCGTCGAAAT
CAAGTTTGATCCCTCTATAGTATCCTACCCGGAGCTCTTGACCGTGCTGT
GGGACCGACACGACCCCACGCAGAAAGACAGGCAGGGGAATGATAGAGGC
ACGCAGTACCGGTCGGCTATCTTCTACCACTCCCTCGCCCAGAAGGAGCA
GGCTGAGGCCAGCATCAAGGAGGACGAGAAACACCGTCTCTCACCGATTG
TCACGCAGGTGGTGCCCGCGACCACGTTTTACGAAGCAGAGGAGTACCAC
CAACAGTATCTTCAGAAAGGAGGGCAATGCGCGCGTAAACAAGACCTGAC
GCCCATCCGGTGCTACGGTTAG

Synonyms

Publications