jgi.p|Nanoce1779_2|271650, mRNA_9347 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|271650
Unique Name	mRNA_9347
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1078
Alignment location	scaffold_35:149053..150708 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	271736
Track	FilteredModels2
ProteinId	271650

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:149053..150708 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|271650	gene_9347	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|271650	mRNA_9347-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9347	CDS_9347	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:149053..150708+
coding sequence from alignment at scaffold_35:149053..150708+

mRNA sequence

>mRNA_9347 ID=mRNA_9347|Name=jgi.p|Nanoce1779_2|271650|organism=Nannochloropsis oceanica|type=mRNA|length=1078bp
GAAGAAGAAGGAAGCACAGTTATGGAGAATAGGCGATGAAGACAAGGAAG
AGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGCTTTATGCGGAC
GAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTGAGGGAGGAAGG
GATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCATCC
CCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGCAGC
CTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGCCCT
CGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAGCTC
GGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAGGAG
GGAGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGGTCC
TCCGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCCTAC
TGGGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGCTTC
TCCTCTTGGCAGACGGAGGATGATGGGGAGGGAGGGGGGGTCAAACGTGT
GCCCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAGGGATCGAGGCCG
AGGACGAGGCCGAGGACGAGGCCGAGGACGAGGACGGATTGGATCTCGAT
TATCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCGGCAGGAGAGTCT
CTGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAGGGGAGGGCAAGA
GGGAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAGAGGGAGGATGAG
AGGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGACCTAGATGGGGT
GACAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCAGGAGCGTCGCGA
GCTAGAAAGCGATCGAATCAGAGGATAGATATGCGAGATGGTATGTCCTT
ATGGATGTGGGAGGAGGTAAAAAATATAGTCCAAAGACGGCGCCGAATAG
CGCCAGAGTGAGGGGGGGAAGTGAGGAG

protein sequence of jgi.p|Nanoce1779_2|271650

>mRNA_9347-protein ID=mRNA_9347-protein|Name=jgi.p|Nanoce1779_2|271650|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MATAAPADSPPSSAAIPAGPPSPSLLFLSALSSLSRPGSWRLYLVLFLAL
VLVLSTSLVVAYLSLARLLGVSPLEGWERGGKEGGRNRHEVFLRPEGEGP
PIVDPSISPWPVYSGLLGYLFGGGFGENKFVRFSSWQTEDDGEGGGVKRV
PFEAYEAITYEEGIEAEDEAEDEAEDEDGLDLDYPSDDEDEGGEWRQESL
WRKRKEAEEEKEGEGKRERCRRSTLEGREREDEREAVVWRSEKVMDLDGV
TGAGGNGGREAARSVAS*

mRNA from alignment at scaffold_35:149053..150708+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9347 ID=mRNA_9347|Name=jgi.p|Nanoce1779_2|271650|organism=Nannochloropsis oceanica|type=mRNA|length=1656bp|location=Sequence derived from alignment at scaffold_35:149053..150708+ (Nannochloropsis oceanica)
GAAGAAGAGAAGGAGGACGGATGGCAGGATGGAGATGAAGGGGACGGAGG
AGAGGGGTTGGTTTGGCGGGAAGTGGAGGGGGAGGAAGGGGAGAGGAGGG
AGGGACGATGGGTGCACAGGGGGGAGGAGGACGAAGAGGGTGAGGAGGAG
GAAGGGGACGAATGGGAAGAGGAAGCACAGTTATGGAGAATAGGCGATGA
AGACAAGGAAGAGGAGGAAGAGGAGGGGTATCTCTCCCACTTCGGCCAGC
TTTATGCGGACGAGGACAAGGCCGAGGACGAGCAAAGTAGGGAGGAAGTG
AGGGAGGAAGGGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTC
TGCCGCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTG
CCCTCAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTC
TTCCTCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTT
ATCCCTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAG
GGGGGAAGGAGGGAGGAAGGAACAGGCATGAAGGTGCGGAAAGGGCGGGG
GGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAAGTTGGTGCCGTG
TGGGTTTCCGTGAAAGGAGCTTGCTTATTCTCTCTCCTTCTCTCCCTTCC
TCCCTCCCTTCTTCCCACTCTCCCACTATCTCGCTTACTTCCCGACGTCA
GTATTTCTCCGCCCCGAGGGCGAGGGTCCTCCGATTGTTGATCCCTCCAT
CAGCCCGTGGCCTGTCTACAGCGGCCTACTGGGGTATTTATTCGGCGGTG
GCTTTGGAGAGAATAAATTCGTGCGCTTCTCCTCTTGGCAGGTAATTGAT
TATTTCCCCTTTCTCCCTCCCTATTTCTTACCCCTCCTCGCCGCAGGCAG
GCGGAAATCAGGTTATTTGTCCTCTCTTTTTCTTCGTCCTACTACCCCCT
GATCCCTCTTCATGACATGCACACGCACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACATACACATACACATACACATACACACAGACGGAGGATG
ATGGGGAGGGAGGGGGGGTCAAACGTGTGCCCTTCGAGGCTTATGAGGCA
ATCACCTACGAGGAAGGGATCGAGGCCGAGGACGAGGCCGAGGACGAGGC
CGAGGACGAGGACGGATTGGATCTCGATTATCCGAGTGATGATGAGGACG
AGGGGGGGGAGTGGCGGCAGGAGAGTCTCTGGAGGAAAAGGAAGGAAGCC
GAGGAAGAAAAGGAAGGGGAGGGCAAGAGGGAGAGATGTCGAAGATCCAC
GTTAGAGGGGAGGGAGAGGGAGGATGAGAGGGAGGCAGTGGTTTGGAGAA
GTGAGAAGGTAATGGACCTAGATGGGGTGACAGGGGCAGGTGGCAATGGA
GGGAGGGAAGCGGCCAGGAGCGTCGCGAGCTAGAAAGCGATCGAATCAGA
GGATAGATATGCGAGATGGTATGTCCTTATGGATGTGGGAGGAGGTAAAA
AATATAGTCCAAAGACGGCGCCGAATAGCGCCAGAGTGAGGGGGGGAAGT
GAGGAG

Coding sequence (CDS) from alignment at scaffold_35:149053..150708+

>mRNA_9347 ID=mRNA_9347|Name=jgi.p|Nanoce1779_2|271650|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_35:149053..150708+ (Nannochloropsis oceanica)
ATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCATCCC
CGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGCAGCC
TCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGCCCTC
GTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAGCTCG
GCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAGGAGG
GAGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGGTCCT
CCGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCCTACT
GGGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGCTTCT
CCTCTTGGCAGACGGAGGATGATGGGGAGGGAGGGGGGGTCAAACGTGTG
CCCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAGGGATCGAGGCCGA
GGACGAGGCCGAGGACGAGGCCGAGGACGAGGACGGATTGGATCTCGATT
ATCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCGGCAGGAGAGTCTC
TGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAGGGGAGGGCAAGAG
GGAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAGAGGGAGGATGAGA
GGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGACCTAGATGGGGTG
ACAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCAGGAGCGTCGCGAG
CTAGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCCGCCA
TCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCTCAGC
AGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCCTCGC
CCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCCCTAG
CTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGGGAAG
GAGGGAGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCGAGGG
TCCTCCGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGCGGCC
TACTGGGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGTGCGC
TTCTCCTCTTGGCAGACGGAGGATGATGGGGAGGGAGGGGGGGTCAAACG
TGTGCCCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAGGGATCGAGG
CCGAGGACGAGGCCGAGGACGAGGCCGAGGACGAGGACGGATTGGATCTC
GATTATCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCGGCAGGAGAG
TCTCTGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAGGGGAGGGCA
AGAGGGAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAGAGGGAGGAT
GAGAGGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGACCTAGATGG
GGTGACAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCAGGAGCGTCG
CGAGCTAGATGGCGACAGCAGCACCCGCAGACTCCCCCCCTTCCTCTGCC
GCCATCCCCGCCGGTCCTCCCTCCCCCTCCCTCCTCTTTCTCTCTGCCCT
CAGCAGCCTCTCCCGACCAGGGAGCTGGCGGTTGTATCTCGTCCTCTTCC
TCGCCCTCGTCCTCGTCCTCTCCACCTCTCTGGTCGTGGCCTACTTATCC
CTAGCTCGGCTTCTGGGAGTGTCACCGTTGGAAGGGTGGGAGCGAGGGGG
GAAGGAGGGAGGAAGGAACAGGCATGAAGTATTTCTCCGCCCCGAGGGCG
AGGGTCCTCCGATTGTTGATCCCTCCATCAGCCCGTGGCCTGTCTACAGC
GGCCTACTGGGGTATTTATTCGGCGGTGGCTTTGGAGAGAATAAATTCGT
GCGCTTCTCCTCTTGGCAGACGGAGGATGATGGGGAGGGAGGGGGGGTCA
AACGTGTGCCCTTCGAGGCTTATGAGGCAATCACCTACGAGGAAGGGATC
GAGGCCGAGGACGAGGCCGAGGACGAGGCCGAGGACGAGGACGGATTGGA
TCTCGATTATCCGAGTGATGATGAGGACGAGGGGGGGGAGTGGCGGCAGG
AGAGTCTCTGGAGGAAAAGGAAGGAAGCCGAGGAAGAAAAGGAAGGGGAG
GGCAAGAGGGAGAGATGTCGAAGATCCACGTTAGAGGGGAGGGAGAGGGA
GGATGAGAGGGAGGCAGTGGTTTGGAGAAGTGAGAAGGTAATGGACCTAG
ATGGGGTGACAGGGGCAGGTGGCAATGGAGGGAGGGAAGCGGCCAGGAGC
GTCGCGAGCTAG

Synonyms

Publications