jgi.p|Nanoce1779_2|606478, mRNA_9346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606478
Unique NamemRNA_9346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length410
Alignment locationscaffold_35:148507..148916 +

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Properties
Property NameValue
TranscriptId606564
TrackFilteredModels2
ProteinId606478
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:148507..148916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606478gene_9346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606478mRNA_9346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9346CDS_9346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9346 ID=mRNA_9346|Name=jgi.p|Nanoce1779_2|606478|organism=Nannochloropsis oceanica|type=mRNA|length=410bp
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGGTAAGTCATGTGCCCGTGTGCACATGCATGAAGACCATCTGTCCC
TGCCTCTCTTCTCATCCATTCTCAATCTTTTTTCTCGGTCATTCTCGTGC
ATCTATTTTTCCCTCTTATATGCCTCCGCCTATGGCCACGCCCAGCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAA
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protein sequence of jgi.p|Nanoce1779_2|606478

>mRNA_9346-protein ID=mRNA_9346-protein|Name=jgi.p|Nanoce1779_2|606478|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MLLSYSSSTRRKRRRGRAGGRRPLSLSLTLLPCLLLLLPSTTALHGKSCA
RVHMHEDHLSLPLFSSILNLFSRSFSCIYFSLLYASAYGHAQP*
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mRNA from alignment at scaffold_35:148507..148916+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9346 ID=mRNA_9346|Name=jgi.p|Nanoce1779_2|606478|organism=Nannochloropsis oceanica|type=mRNA|length=410bp|location=Sequence derived from alignment at scaffold_35:148507..148916+ (Nannochloropsis oceanica)
CAGAACAGACCAGTCCACCATGCTGCTGTCGTACAGCAGCAGTACCAGGA
GGAAGAGAAGGAGAGGGCGCGCTGGCGGTCGGCGCCCGCTGTCATTGTCG
CTTACCCTCCTCCCTTGCCTTCTCCTTCTCCTTCCCAGCACGACAGCACT
ACACGGTAAGTCATGTGCCCGTGTGCACATGCATGAAGACCATCTGTCCC
TGCCTCTCTTCTCATCCATTCTCAATCTTTTTTCTCGGTCATTCTCGTGC
ATCTATTTTTCCCTCTTATATGCCTCCGCCTATGGCCACGCCCAGCCGTA
GCAGACAGTCCTCTTGTTGCTGCCATGGAGGGAGGGATGGAGGGAGGGTT
GGAGGGAGGAGGAGCGGAGGAATGGGAGCATGCAGTAAGGGTCATGCGGA
TGGAGATGAA
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Coding sequence (CDS) from alignment at scaffold_35:148507..148916+

>mRNA_9346 ID=mRNA_9346|Name=jgi.p|Nanoce1779_2|606478|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_35:148507..148916+ (Nannochloropsis oceanica)
ATGCTGCTGTCGTACAGCAGCAGTACCAGGAGGAAGAGAAGGAGAGGGCG
CGCTGGCGGTCGGCGCCCGCTGTCATTGTCGCTTACCCTCCTCCCTTGCC
TTCTCCTTCTCCTTCCCAGCACGACAGCACTACACGGTAAGTCATGTGCC
CGTGTGCACATGCATGAAGACCATCTGTCCCTGCCTCTCTTCTCATCCAT
TCTCAATCTTTTTTCTCGGTCATTCTCGTGCATCTATTTTTCCCTCTTAT
ATGCCTCCGCCTATGGCCACGCCCAGCCGTAG
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Synonyms
Publications