jgi.p|Nanoce1779_2|606468, mRNA_9344 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606468
Unique NamemRNA_9344
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length995
Alignment locationscaffold_35:141832..142826 +

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Properties
Property NameValue
TranscriptId606554
TrackFilteredModels2
ProteinId606468
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:141832..142826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606468gene_9344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606468mRNA_9344-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9344CDS_9344Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9344 ID=mRNA_9344|Name=jgi.p|Nanoce1779_2|606468|organism=Nannochloropsis oceanica|type=mRNA|length=995bp
TCCCTTCCTCCGCCGCCCCCACGCAACCACAGGCGCATCGCCGCGCTCTT
TCCTTCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCCTCCTCCTCCTCGTC
TCCCCCACGTCCCACCAATCCCACCAATGATGACAGCAACAACGGCAGTA
CCACCCACTTCGGCTTCAAGCAAGTCCCCGTCGATGAGAAAGAGAAGCTG
GTCAAGGGCGTGTTCAACAGTGTGGCCAGCAAATACGATATGATGAATGA
CCTTATGTCCGGGGGCATGCATCGGCTTTGGAAAGACGATTTCGTCCAGA
TGGCTGGCCTGTCCGCCGTCCTCCGCACTAATGCCGGGGGAGACGGCATC
CGTCTACTGGACGTCGCGGGTGGCACGGGGGACATTGCCTTTCGTCTGAT
GAAAAAGGCCCTCGAGACATACCCTCCCCCCCACTCCACCCCTCCCCCCT
CCATCACCATATTTGACATCAATGCCGAGATGCTCAAAGTCGGTCAAGTC
CGTGCCAAGGAAAAAGTATTCCCGAATCTCCCTCAGGTTCACTCCAACCT
GGAGTGGGTAGAGGGGAACGCGGAGGAGCTCCCTTTCCCTGACAATACTT
TTGATCTTTACACCATCGCCTTTGGCCTCCGCAATGTCACCCGACGCGAT
AAAGCCCTAAGAGAAGCCTTCCGAGTCCTGAAGAAAGGCGGGCGGTTTAT
GTGTTTGGAGTTCTCGCACGTCTCCTTGCCATTGGCGAAAGAGGCTTACG
ACCTCTATTCATTCGAGGTTATCCCGCGCCTGGGACAGGCTGTCACGGGG
GATGCGGAGTCCTATCGGTACCTGGTCGAGTCCATCAGGCAATTCCCCAA
GCAGGAAGAGCTGGTGAAGGAGATCGAGCAGGCGGGCTTCCAGAGCGTGG
GCTACGTGAACTATACGCTGGGCAGCGTGGCGGTCCACAGCGGGTTCAAG
TGGGTCTAGGCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
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protein sequence of jgi.p|Nanoce1779_2|606468

>mRNA_9344-protein ID=mRNA_9344-protein|Name=jgi.p|Nanoce1779_2|606468|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MMNDLMSGGMHRLWKDDFVQMAGLSAVLRTNAGGDGIRLLDVAGGTGDIA
FRLMKKALETYPPPHSTPPPSITIFDINAEMLKVGQVRAKEKVFPNLPQV
HSNLEWVEGNAEELPFPDNTFDLYTIAFGLRNVTRRDKALREAFRVLKKG
GRFMCLEFSHVSLPLAKEAYDLYSFEVIPRLGQAVTGDAESYRYLVESIR
QFPKQEELVKEIEQAGFQSVGYVNYTLGSVAVHSGFKWV*
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mRNA from alignment at scaffold_35:141832..142826+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9344 ID=mRNA_9344|Name=jgi.p|Nanoce1779_2|606468|organism=Nannochloropsis oceanica|type=mRNA|length=995bp|location=Sequence derived from alignment at scaffold_35:141832..142826+ (Nannochloropsis oceanica)
TCCCTTCCTCCGCCGCCCCCACGCAACCACAGGCGCATCGCCGCGCTCTT
TCCTTCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCCTCCTCCTCCTCGTC
TCCCCCACGTCCCACCAATCCCACCAATGATGACAGCAACAACGGCAGTA
CCACCCACTTCGGCTTCAAGCAAGTCCCCGTCGATGAGAAAGAGAAGCTG
GTCAAGGGCGTGTTCAACAGTGTGGCCAGCAAATACGATATGATGAATGA
CCTTATGTCCGGGGGCATGCATCGGCTTTGGAAAGACGATTTCGTCCAGA
TGGCTGGCCTGTCCGCCGTCCTCCGCACTAATGCCGGGGGAGACGGCATC
CGTCTACTGGACGTCGCGGGTGGCACGGGGGACATTGCCTTTCGTCTGAT
GAAAAAGGCCCTCGAGACATACCCTCCCCCCCACTCCACCCCTCCCCCCT
CCATCACCATATTTGACATCAATGCCGAGATGCTCAAAGTCGGTCAAGTC
CGTGCCAAGGAAAAAGTATTCCCGAATCTCCCTCAGGTTCACTCCAACCT
GGAGTGGGTAGAGGGGAACGCGGAGGAGCTCCCTTTCCCTGACAATACTT
TTGATCTTTACACCATCGCCTTTGGCCTCCGCAATGTCACCCGACGCGAT
AAAGCCCTAAGAGAAGCCTTCCGAGTCCTGAAGAAAGGCGGGCGGTTTAT
GTGTTTGGAGTTCTCGCACGTCTCCTTGCCATTGGCGAAAGAGGCTTACG
ACCTCTATTCATTCGAGGTTATCCCGCGCCTGGGACAGGCTGTCACGGGG
GATGCGGAGTCCTATCGGTACCTGGTCGAGTCCATCAGGCAATTCCCCAA
GCAGGAAGAGCTGGTGAAGGAGATCGAGCAGGCGGGCTTCCAGAGCGTGG
GCTACGTGAACTATACGCTGGGCAGCGTGGCGGTCCACAGCGGGTTCAAG
TGGGTCTAGGCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
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Coding sequence (CDS) from alignment at scaffold_35:141832..142826+

>mRNA_9344 ID=mRNA_9344|Name=jgi.p|Nanoce1779_2|606468|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_35:141832..142826+ (Nannochloropsis oceanica)
ATGATGAATGACCTTATGTCCGGGGGCATGCATCGGCTTTGGAAAGACGA
TTTCGTCCAGATGGCTGGCCTGTCCGCCGTCCTCCGCACTAATGCCGGGG
GAGACGGCATCCGTCTACTGGACGTCGCGGGTGGCACGGGGGACATTGCC
TTTCGTCTGATGAAAAAGGCCCTCGAGACATACCCTCCCCCCCACTCCAC
CCCTCCCCCCTCCATCACCATATTTGACATCAATGCCGAGATGCTCAAAG
TCGGTCAAGTCCGTGCCAAGGAAAAAGTATTCCCGAATCTCCCTCAGGTT
CACTCCAACCTGGAGTGGGTAGAGGGGAACGCGGAGGAGCTCCCTTTCCC
TGACAATACTTTTGATCTTTACACCATCGCCTTTGGCCTCCGCAATGTCA
CCCGACGCGATAAAGCCCTAAGAGAAGCCTTCCGAGTCCTGAAGAAAGGC
GGGCGGTTTATGTGTTTGGAGTTCTCGCACGTCTCCTTGCCATTGGCGAA
AGAGGCTTACGACCTCTATTCATTCGAGGTTATCCCGCGCCTGGGACAGG
CTGTCACGGGGGATGCGGAGTCCTATCGGTACCTGGTCGAGTCCATCAGG
CAATTCCCCAAGCAGGAAGAGCTGGTGAAGGAGATCGAGCAGGCGGGCTT
CCAGAGCGTGGGCTACGTGAACTATACGCTGGGCAGCGTGGCGGTCCACA
GCGGGTTCAAGTGGGTCTAG
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Synonyms
Publications