jgi.p|Nanoce1779_2|606467, mRNA_9343 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606467
Unique Name	mRNA_9343
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1997
Alignment location	scaffold_35:139763..141759 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606553
Track	FilteredModels2
ProteinId	606467

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:139763..141759 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606467	gene_9343	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606467	mRNA_9343-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9343	CDS_9343	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:139763..141759+
coding sequence from alignment at scaffold_35:139763..141759+

mRNA sequence

>mRNA_9343 ID=mRNA_9343|Name=jgi.p|Nanoce1779_2|606467|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp
ACAGGCAGTCACCACCAGCAGCACTAGCATCAGCATCAGTTCCTGCAGAA
GCCGGCCTCGTTGGAACCCTCCTCCCGCCTCTGCTTCCACCACTACTTTT
CGCATCCTCCTACCCACCACCATCCCTGGCCTCATGCCCGACGAGACCGA
AGTGTCACCACCCCCACCAATTTCCGCACCACCTCTCGTCGAGGAAGGTA
TCCCGCCCACATTCACGGCGGCCTCCCCTGCCCTCTGCTTTCACATCCAC
GCTCGATGGCGACGCGCAAGGGCCGCCACCGTCCACTTGCCCCACGGTCC
CCTCGCGACGCCTGTCTTCATGCCCGTGGGCACCAAGGGCACAATTAAAG
GCATCCCAACCGAACAATTACTCCATCCAGAACTTTCTCCTCAGATTATT
CTGGGGAACACATACCACCTCGCCTTGCAGCCGGGGACGGACCTGCTGGA
GGAAATGGGGGGCTTGCACAAATTTATGAACTGGCCTCGCAACCTCCTCA
CCGACTCGGGAGGATTCCAGATGGTCTCCCTCTTGGCCTTGGCCGAGATC
ACGGAGGAAGGTGTGACGTTTCAAAGCCCTATCGATGGGACGCAGATGCT
GCTGACGCCTGAGATGTCCATTGCGCACCAAAACCGGATAGGGTCCGATA
TAATGATGCAGCTTGACGATGTCGTGTCTTCTGTCACTGAGAACGACGAC
CGCTTCCGTGAAGCCACCGCGCGATCCATCCGGTGGTTAGATCGGTGCAT
ACAAGCACACTCTCGACCGCAAGAACAGAATCTGTTCGGCATCATTCAGG
GGGGGTTGGATACTTCCCCGGGCGGATTGCGGGAAGGGTGCCTGCGCGAA
ATGATCGCCCGCGACTGTCCAGGTTACGCGATTGGGGGTCTAGCGGGTGG
AGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGCACAGTCTGCCGCGGGTT
TACCCGAGGGGAAACCGAGGTATTTGATGGGTGTCGGCTATCCGCTAGAC
TTGGTGGTGTGCACGGCGTTGGGCGTGGATATGTATGACTGTGTCTACCC
CACTCGCACGGCCAGATTTGGCGTCGCGCTTGTTGGAACGGGGGTTTTGA
AGCTTAAGAACAACGCATGTGGGAATGAGACGGGCAAACCTATCGAAGAG
GGGTGTCAGTGCATGACGTGCAAGAACTACTCGCGCGCAGCGATACACCG
GTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATTAGTCACGTACCACAACC
TCGCTTACATGCTCGGATTGATGCGAAGAATGCGAAAGGCGATTATGGAG
GGAGGAGACGCTTTTCCTAGCTTTGTATTGGCGTTTTTGAAAGCTCACTA
TTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAAAGTAGATGTGACAGTGC
CTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGGGCATTGAAGTGCCACAG
ACATTTCAGAGTGAGGGAGAAATTGAAAAAGATTAGCCGGGAGCAATGTA
CATGCCATGTAAAAGAATGTATTAAAGTGCCAAGCATTGCTATTAAGGAG
GTTTTGGCAGAAAATATTTTATATATATCTGTGCGCAATAAAATCAAGCG
CTCACAGGGCAACGAGGTTATTGTAATAGAGAGGAAAGCGAGCTATACAA
ATTGCTTTTGCAGCAAATTCTGATCGTGGAAGCGCCTTCGCGTAAGGACG
GTATGGAGGAGGTTGGTAAATTGGGCGAGGCCGCGATTTAACCACTTTAT
TTTAGCCCGAGGTCTCTATGTCTCCGGTGTCTATGTATTTGCGCACCTTG
TGTAGCTGTCTGTGTGTGAGGCTCTTGTCGAAAACACCACACAAATGCAT
CTCAGCCCTTCATTTGTCCTGACCCCCCACACCTCTGTTTTTGTTCGCCA
TCACGCCTGCATTCCAATCCAAGACCCTTCGGCTTGCCCCACCCGCCCTC
TTAATTTAGCACAATAACAGCCACCATGGCCAGCACGCTATCAAGAC

protein sequence of jgi.p|Nanoce1779_2|606467

>mRNA_9343-protein ID=mRNA_9343-protein|Name=jgi.p|Nanoce1779_2|606467|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MPDETEVSPPPPISAPPLVEEGIPPTFTAASPALCFHIHARWRRARAATV
HLPHGPLATPVFMPVGTKGTIKGIPTEQLLHPELSPQIILGNTYHLALQP
GTDLLEEMGGLHKFMNWPRNLLTDSGGFQMVSLLALAEITEEGVTFQSPI
DGTQMLLTPEMSIAHQNRIGSDIMMQLDDVVSSVTENDDRFREATARSIR
WLDRCIQAHSRPQEQNLFGIIQGGLDTSPGGLREGCLREMIARDCPGYAI
GGLAGGESKEAFWKVVAQSAAGLPEGKPRYLMGVGYPLDLVVCTALGVDM
YDCVYPTRTARFGVALVGTGVLKLKNNACGNETGKPIEEGCQCMTCKNYS
RAAIHRLLKSGALGCQLVTYHNLAYMLGLMRRMRKAIMEGGDAFPSFVLA
FLKAHYSGEIAGKKGEKVDVTVPEWVREALGVAGIEVPQTFQSEGEIEKD
*

mRNA from alignment at scaffold_35:139763..141759+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9343 ID=mRNA_9343|Name=jgi.p|Nanoce1779_2|606467|organism=Nannochloropsis oceanica|type=mRNA|length=1997bp|location=Sequence derived from alignment at scaffold_35:139763..141759+ (Nannochloropsis oceanica)
ACAGGCAGTCACCACCAGCAGCACTAGCATCAGCATCAGTTCCTGCAGAA
GCCGGCCTCGTTGGAACCCTCCTCCCGCCTCTGCTTCCACCACTACTTTT
CGCATCCTCCTACCCACCACCATCCCTGGCCTCATGCCCGACGAGACCGA
AGTGTCACCACCCCCACCAATTTCCGCACCACCTCTCGTCGAGGAAGGTA
TCCCGCCCACATTCACGGCGGCCTCCCCTGCCCTCTGCTTTCACATCCAC
GCTCGATGGCGACGCGCAAGGGCCGCCACCGTCCACTTGCCCCACGGTCC
CCTCGCGACGCCTGTCTTCATGCCCGTGGGCACCAAGGGCACAATTAAAG
GCATCCCAACCGAACAATTACTCCATCCAGAACTTTCTCCTCAGATTATT
CTGGGGAACACATACCACCTCGCCTTGCAGCCGGGGACGGACCTGCTGGA
GGAAATGGGGGGCTTGCACAAATTTATGAACTGGCCTCGCAACCTCCTCA
CCGACTCGGGAGGATTCCAGATGGTCTCCCTCTTGGCCTTGGCCGAGATC
ACGGAGGAAGGTGTGACGTTTCAAAGCCCTATCGATGGGACGCAGATGCT
GCTGACGCCTGAGATGTCCATTGCGCACCAAAACCGGATAGGGTCCGATA
TAATGATGCAGCTTGACGATGTCGTGTCTTCTGTCACTGAGAACGACGAC
CGCTTCCGTGAAGCCACCGCGCGATCCATCCGGTGGTTAGATCGGTGCAT
ACAAGCACACTCTCGACCGCAAGAACAGAATCTGTTCGGCATCATTCAGG
GGGGGTTGGATACTTCCCCGGGCGGATTGCGGGAAGGGTGCCTGCGCGAA
ATGATCGCCCGCGACTGTCCAGGTTACGCGATTGGGGGTCTAGCGGGTGG
AGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGCACAGTCTGCCGCGGGTT
TACCCGAGGGGAAACCGAGGTATTTGATGGGTGTCGGCTATCCGCTAGAC
TTGGTGGTGTGCACGGCGTTGGGCGTGGATATGTATGACTGTGTCTACCC
CACTCGCACGGCCAGATTTGGCGTCGCGCTTGTTGGAACGGGGGTTTTGA
AGCTTAAGAACAACGCATGTGGGAATGAGACGGGCAAACCTATCGAAGAG
GGGTGTCAGTGCATGACGTGCAAGAACTACTCGCGCGCAGCGATACACCG
GTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATTAGTCACGTACCACAACC
TCGCTTACATGCTCGGATTGATGCGAAGAATGCGAAAGGCGATTATGGAG
GGAGGAGACGCTTTTCCTAGCTTTGTATTGGCGTTTTTGAAAGCTCACTA
TTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAAAGTAGATGTGACAGTGC
CTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGGGCATTGAAGTGCCACAG
ACATTTCAGAGTGAGGGAGAAATTGAAAAAGATTAGCCGGGAGCAATGTA
CATGCCATGTAAAAGAATGTATTAAAGTGCCAAGCATTGCTATTAAGGAG
GTTTTGGCAGAAAATATTTTATATATATCTGTGCGCAATAAAATCAAGCG
CTCACAGGGCAACGAGGTTATTGTAATAGAGAGGAAAGCGAGCTATACAA
ATTGCTTTTGCAGCAAATTCTGATCGTGGAAGCGCCTTCGCGTAAGGACG
GTATGGAGGAGGTTGGTAAATTGGGCGAGGCCGCGATTTAACCACTTTAT
TTTAGCCCGAGGTCTCTATGTCTCCGGTGTCTATGTATTTGCGCACCTTG
TGTAGCTGTCTGTGTGTGAGGCTCTTGTCGAAAACACCACACAAATGCAT
CTCAGCCCTTCATTTGTCCTGACCCCCCACACCTCTGTTTTTGTTCGCCA
TCACGCCTGCATTCCAATCCAAGACCCTTCGGCTTGCCCCACCCGCCCTC
TTAATTTAGCACAATAACAGCCACCATGGCCAGCACGCTATCAAGAC

Coding sequence (CDS) from alignment at scaffold_35:139763..141759+

>mRNA_9343 ID=mRNA_9343|Name=jgi.p|Nanoce1779_2|606467|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_35:139763..141759+ (Nannochloropsis oceanica)
ATGCCCGACGAGACCGAAGTGTCACCACCCCCACCAATTTCCGCACCACC
TCTCGTCGAGGAAGGTATCCCGCCCACATTCACGGCGGCCTCCCCTGCCC
TCTGCTTTCACATCCACGCTCGATGGCGACGCGCAAGGGCCGCCACCGTC
CACTTGCCCCACGGTCCCCTCGCGACGCCTGTCTTCATGCCCGTGGGCAC
CAAGGGCACAATTAAAGGCATCCCAACCGAACAATTACTCCATCCAGAAC
TTTCTCCTCAGATTATTCTGGGGAACACATACCACCTCGCCTTGCAGCCG
GGGACGGACCTGCTGGAGGAAATGGGGGGCTTGCACAAATTTATGAACTG
GCCTCGCAACCTCCTCACCGACTCGGGAGGATTCCAGATGGTCTCCCTCT
TGGCCTTGGCCGAGATCACGGAGGAAGGTGTGACGTTTCAAAGCCCTATC
GATGGGACGCAGATGCTGCTGACGCCTGAGATGTCCATTGCGCACCAAAA
CCGGATAGGGTCCGATATAATGATGCAGCTTGACGATGTCGTGTCTTCTG
TCACTGAGAACGACGACCGCTTCCGTGAAGCCACCGCGCGATCCATCCGG
TGGTTAGATCGGTGCATACAAGCACACTCTCGACCGCAAGAACAGAATCT
GTTCGGCATCATTCAGGGGGGGTTGGATACTTCCCCGGGCGGATTGCGGG
AAGGGTGCCTGCGCGAAATGATCGCCCGCGACTGTCCAGGTTACGCGATT
GGGGGTCTAGCGGGTGGAGAGAGCAAGGAAGCATTTTGGAAGGTGGTGGC
ACAGTCTGCCGCGGGTTTACCCGAGGGGAAACCGAGGTATTTGATGGGTG
TCGGCTATCCGCTAGACTTGGTGGTGTGCACGGCGTTGGGCGTGGATATG
TATGACTGTGTCTACCCCACTCGCACGGCCAGATTTGGCGTCGCGCTTGT
TGGAACGGGGGTTTTGAAGCTTAAGAACAACGCATGTGGGAATGAGACGG
GCAAACCTATCGAAGAGGGGTGTCAGTGCATGACGTGCAAGAACTACTCG
CGCGCAGCGATACACCGGTTGCTCAAGTCGGGAGCTCTGGGGTGTCAATT
AGTCACGTACCACAACCTCGCTTACATGCTCGGATTGATGCGAAGAATGC
GAAAGGCGATTATGGAGGGAGGAGACGCTTTTCCTAGCTTTGTATTGGCG
TTTTTGAAAGCTCACTATTCTGGTGAGATTGCTGGGAAGAAAGGAGAAAA
AGTAGATGTGACAGTGCCTGAGTGGGTGAGGGAAGCGCTGGGTGTAGCGG
GCATTGAAGTGCCACAGACATTTCAGAGTGAGGGAGAAATTGAAAAAGAT
TAG

Synonyms

Publications