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Properties
| Property Name | Value |
|---|
| TranscriptId | 574792 |
| Track | FilteredModels2 |
| ProteinId | 574706 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:786848..789186 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_934 ID=mRNA_934|Name=jgi.p|Nanoce1779_2|574706|organism=Nannochloropsis oceanica|type=mRNA|length=2002bp
ACAGGAAACTTCGCCTCGCTCCTCAATTTCCACGGAAGGATTCCCACCAC
CACAACCATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGCTGG
CCTATTATACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGCTTT
TCCAGTCCAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGAGAA
AATTGAGACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTGTGT
CCCTTCTGTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCAGGG
ATGCTGCAGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCCAGA
GCGCAAAGCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTGGAG
TCGTCGAAAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTGGAG
CGCCTTAAATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCTGCT
CCTGCTCATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCTCTA
CCATTGGCGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAACCTG
CAGCATCCCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGGCTA
CCATTGGATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTCCTA
TCGTTGTCTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCCGGC
CGCCTCTTGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCCTTT
TTTTGGAGGACTGATGCAGCAAGTCCAATGTATTTTTGTCTCGCGCACCG
ATAAAGACTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCTCCAAA
GTAGAAAGGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGGGAC
CACCACGAACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCGCCG
GTGGGGTAAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAGATC
TGCGATCCATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCTGTT
TAAATTGCTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCTGCCTG
TTTATAATCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGCACA
AATGTCAGGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGATCA
CTCATTCGATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGTACC
AGGGGGGTCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAGATC
CTAGAAATCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTCTCA
GCTTGACACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCAAAG
CTTTCGGCTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTATTA
GACGTGCAAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACAGGTTT
AGCACTGTTGAACGAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCT
TGATTTTTAAAATTCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAA
GACACTGCAAAGGTACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCT
TTTAGACTCGACGTTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGA
GCGCTGACGAGTTTCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCG
TCGCTTAAGAGCTCGTTATGCGGGAAGCTTTGAGTAAATGTATATTTTCG
GCTGAGAAGGTTGGGTTGGGTGGTGCATCTTTTACGGGAAGTGTGCCCAT
GGAAAAGTAAATAAATTAAGCTGGTATAGATTGGCTGGACATTTGAAAGG
CAAGGCCGTTATGTGAGAAAGAAAAAATGGAGCCGCGATTCAACTGGAAA
AG back to topprotein sequence of jgi.p|Nanoce1779_2|574706 >mRNA_934-protein ID=mRNA_934-protein|Name=jgi.p|Nanoce1779_2|574706|organism=Nannochloropsis oceanica|type=polypeptide|length=592bp
MATTIIFSSMPPLLAYYTCAAVTIYVVLGRFSSPNPRLRWLKLKDLEKIE
TEKNAAHLPESDLVSLLSGNLSSSKPNVVAGMLQSSLASSSSPSTSPERK
APVMRKLSFLATTGVVENPFMNNTWEIYRLERLKCAVFGPVLIPPRLLLL
IVSLLGAYGFGKLSTIGAELERPMPRWRINLQHPMKFFARGIMFALGYHW
ISIKGKQASPQHAPIVVSNHCSFCEAIYLPGRLLSMAVSRRENAAIPFFG
GLMQQVQCIFVSRTDKDSRTTVADEILRRSKVERGLWHRQLLVFPEGTTT
NGSAVISFKVGSFAGGVSVQPVAVSYPSNKICDPSWVSGGPHPGEILFKL
LCQPWNCMNVTFLPVYNPDAAEIADPLLFSTNVRRLIAAELGVPASDHSF
DDVLLLMEAKKLGYQGGLRDCISELKNMRKILEIDLAKAKEYLHDFSQLD
TYRKGLLSYPQFIKAFGSKDSDALRSLFCVLDVQDRGVINLVEYTTGLAL
LNEQGTDGFDGAMRLIFKIQDSSGEGRLSKEDTAKVLRRLWPDVTTELLD
STFAAADTDKDGTLSADEFLALARSNQHLWPSLKSSLCGKL* back to topmRNA from alignment at scaffold_2:786848..789186- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_934 ID=mRNA_934|Name=jgi.p|Nanoce1779_2|574706|organism=Nannochloropsis oceanica|type=mRNA|length=2339bp|location=Sequence derived from alignment at scaffold_2:786848..789186- (Nannochloropsis oceanica)
ACAGGAAACTTCGCCTCGCTCCTCAATTTCCACGGAAGGATTCCCACCAC
CACAACCATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGCTGG
CCTATTATACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGCTTT
TCCAGTCCAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGAGAA
AATTGAGACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTGTGT
CCCTTCTGTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCAGGG
ATGCTGCAGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCCAGA
GCGCAAAGCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTGGAG
TCGTCGAAAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTGGAG
CGCCTTAAATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCTGCT
CCTGCTCATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCTCTA
CCATTGGCGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAACCTG
CAGCATCCCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGGCTA
CCATTGGATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTCCTA
TCGTTGTCTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCCGGC
CGCCTCTTGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCCTTT
TTTTGGAGGACTGATGCAGCAAGGCAAGTAGTAACATTTAGGGATGGATT
GATTGTGGCACGAGAAGCAGAGAGCAGAGCCGACCCCGAGCGAATTCACC
TCATATTTGCTTTTAACTTGGCATTTTCTCTCCCCCATCCCGTTTCCCTC
TTCCCCCTCCGCCCCACAGTCCAATGTATTTTTGTCTCGCGCACCGATAA
AGACTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCTCCAAAGTAG
AAAGGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGGGACCACC
ACGAACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCGCCGGTGG
GGTAAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAGATCTGCG
ATCCATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCTGTTTAAA
TTGCTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCTGCCTGTTTA
TAATCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGCACAAATG
TCAGGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGATCACTCA
TTCGATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGTACCAGGG
GGGTCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAGATCCTAG
AAATCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTCTCAGCTT
GACACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCAAAGCTTT
CGGCTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTATTAGACG
TGCAAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACAGGTTTAGCA
CTGGTATGTATTCCTCCCATCTCTCACTCCTTTCTCGATGTCCTTCTCGA
TAACTTCTCTTCCCTTCTTTTCACCCTCTCTTCGCAAAATTTCTCCCTCT
CTCCAATTTAAAACTTACTTCCAGCTTCATCCATCTAACAATCCCTCCCT
CCCTTCCTTCCCTTTTTCCTTACCCTTTTCCCTTACCTTTTCAGTTGAAC
GAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCTTGATTTTTAAAAT
TCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACACTGCAAAGG
TACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAGACTCGACG
TTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGAGCGCTGACGAGTT
TCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCTTAAGAGCT
CGTTATGCGGGAAGCTTTGAGTAAATGTATATTTTCGGCTGAGAAGGTTG
GGTTGGGTGGTGCATCTTTTACGGGAAGTGTGCCCATGGAAAAGTAAATA
AATTAAGCTGGTATAGATTGGCTGGACATTTGAAAGGCAAGGCCGTTATG
TGAGAAAGAAAAAATGGAGCCGCGATTCAACTGGAAAAG back to topCoding sequence (CDS) from alignment at scaffold_2:786848..789186- >mRNA_934 ID=mRNA_934|Name=jgi.p|Nanoce1779_2|574706|organism=Nannochloropsis oceanica|type=CDS|length=5328bp|location=Sequence derived from alignment at scaffold_2:786848..789186- (Nannochloropsis oceanica)
TTGAACGAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCTTGATTTT
TAAAATTCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACACTG
CAAAGGTACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAGAC
TCGACGTTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGAGCGCTGA
CGAGTTTCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCTTA
AGAGCTCGTTATGCGGGAAGCTTTGATCCAATGTATTTTTGTCTCGCGCA
CCGATAAAGACTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCTCC
AAAGTAGAAAGGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAAGG
GACCACCACGAACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTTCG
CCGGTGGGGTAAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACAAG
ATCTGCGATCCATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATTCT
GTTTAAATTGCTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCTGC
CTGTTTATAATCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTAGC
ACAAATGTCAGGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGTGA
TCACTCATTCGATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGGGT
ACCAGGGGGGTCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAAAG
ATCCTAGAAATCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTCTC
TCAGCTTGACACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCATCA
AAGCTTTCGGCTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTGTA
TTAGACGTGCAAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACAGG
TTTAGCACTGATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCTGC
TGGCCTATTATACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCCGC
TTTTCCAGTCCAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTGGA
GAAAATTGAGACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCTTG
TGTCCCTTCTGTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTGCA
GGGATGCTGCAGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCCCC
AGAGCGCAAAGCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGACTG
GAGTCGTCGAAAATCCCTTCATGAACAATACTTGGGAGATCTATAGGCTG
GAGCGCCTTAAATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGTCT
GCTCCTGCTCATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCTCT
CTACCATTGGCGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTAAC
CTGCAGCATCCCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTGGG
CTACCATTGGATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGCTC
CTATCGTTGTCTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTACCC
GGCCGCCTCTTGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATCCC
TTTTTTTGGAGGACTGATGCAGCAAGTTGAACGAGCAAGGCACCGACGGT
TTTGATGGAGCCATGCGCTTGATTTTTAAAATTCAAGATTCGAGCGGGGA
GGGGCGGCTCTCGAAGGAAGACACTGCAAAGGTACTACGGCGGCTGTGGC
CTGACGTGACAACGGAGCTTTTAGACTCGACGTTTGCTGCGGCGGACACA
GACAAGGATGGGACGTTGAGCGCTGACGAGTTTCTGGCGTTGGCGAGGTC
AAATCAACACCTGTGGCCGTCGCTTAAGAGCTCGTTATGCGGGAAGCTTT
GATCCAATGTATTTTTGTCTCGCGCACCGATAAAGACTCCCGGACCACTG
TCGCCGACGAGATCTTGAGACGCTCCAAAGTAGAAAGGGGGCTGTGGCAC
CGTCAACTCCTCGTCTTCCCAGAAGGGACCACCACGAACGGTAGTGCCGT
CATCAGCTTCAAAGTCGGCTCTTTCGCCGGTGGGGTAAGCGTGCAACCAG
TCGCTGTATCCTACCCCTCCAACAAGATCTGCGATCCATCATGGGTCAGT
GGTGGGCCGCATCCCGGCGAGATTCTGTTTAAATTGCTGTGTCAGCCATG
GAACTGTATGAATGTTACTTTCCTGCCTGTTTATAATCCCGACGCCGCTG
AAATTGCTGACCCCCTGCTGTTTAGCACAAATGTCAGGCGGCTGATAGCC
GCAGAGTTGGGCGTGCCTGCTAGTGATCACTCATTCGATGACGTTTTGCT
GTTAATGGAGGCGAAGAAGCTAGGGTACCAGGGGGGTCTTCGTGATTGCA
TCTCTGAGCTGAAGAATATGCGAAAGATCCTAGAAATCGACCTGGCCAAA
GCAAAAGAATACTTGCATGATTTCTCTCAGCTTGACACATACAGGAAGGG
GCTGTTGTCATACCCTCAATTCATCAAAGCTTTCGGCTCCAAGGATTCAG
ACGCACTGAGGAGTCTATTTTGTGTATTAGACGTGCAAGATCGGGGAGTG
ATCAATTTGGTGGAGTACACCACAGGTTTAGCACTGATGGCAACGACCAT
CATATTTAGCTCAATGCCCCCCCTGCTGGCCTATTATACGTGCGCCGCAG
TCACTATCTACGTAGTGCTCGGCCGCTTTTCCAGTCCAAACCCGCGCTTG
AGATGGCTGAAGCTGAAAGACCTGGAGAAAATTGAGACCGAAAAGAATGC
CGCGCACTTGCCCGAGTCTGATCTTGTGTCCCTTCTGTCTGGAAATCTAT
CGTCCTCCAAGCCCAATGTCGTTGCAGGGATGCTGCAGTCTTCCTTGGCA
TCGTCGTCCTCCCCCTCGACATCCCCAGAGCGCAAAGCTCCTGTGATGCG
GAAGCTTTCCTTTCTCGCCACGACTGGAGTCGTCGAAAATCCCTTCATGA
ACAATACTTGGGAGATCTATAGGCTGGAGCGCCTTAAATGTGCGGTCTTC
GGTCCAGTGCTCATCCCTCCCCGTCTGCTCCTGCTCATCGTGTCACTTCT
TGGAGCCTATGGGTTCGGGAAGCTCTCTACCATTGGCGCAGAACTAGAGC
GCCCCATGCCTAGATGGCGCATTAACCTGCAGCATCCCATGAAGTTCTTT
GCGCGCGGGATTATGTTTGCATTGGGCTACCATTGGATCTCCATCAAAGG
AAAGCAAGCAAGCCCACAACACGCTCCTATCGTTGTCTCCAACCATTGCT
CCTTCTGTGAAGCCATCTATCTACCCGGCCGCCTCTTGTCCATGGCTGTT
TCCCGCCGGGAAAACGCTGCTATCCCTTTTTTTGGAGGACTGATGCAGCA
AGTTGAACGAGCAAGGCACCGACGGTTTTGATGGAGCCATGCGCTTGATT
TTTAAAATTCAAGATTCGAGCGGGGAGGGGCGGCTCTCGAAGGAAGACAC
TGCAAAGGTACTACGGCGGCTGTGGCCTGACGTGACAACGGAGCTTTTAG
ACTCGACGTTTGCTGCGGCGGACACAGACAAGGATGGGACGTTGAGCGCT
GACGAGTTTCTGGCGTTGGCGAGGTCAAATCAACACCTGTGGCCGTCGCT
TAAGAGCTCGTTATGCGGGAAGCTTTGATCCAATGTATTTTTGTCTCGCG
CACCGATAAAGACTCCCGGACCACTGTCGCCGACGAGATCTTGAGACGCT
CCAAAGTAGAAAGGGGGCTGTGGCACCGTCAACTCCTCGTCTTCCCAGAA
GGGACCACCACGAACGGTAGTGCCGTCATCAGCTTCAAAGTCGGCTCTTT
CGCCGGTGGGGTAAGCGTGCAACCAGTCGCTGTATCCTACCCCTCCAACA
AGATCTGCGATCCATCATGGGTCAGTGGTGGGCCGCATCCCGGCGAGATT
CTGTTTAAATTGCTGTGTCAGCCATGGAACTGTATGAATGTTACTTTCCT
GCCTGTTTATAATCCCGACGCCGCTGAAATTGCTGACCCCCTGCTGTTTA
GCACAAATGTCAGGCGGCTGATAGCCGCAGAGTTGGGCGTGCCTGCTAGT
GATCACTCATTCGATGACGTTTTGCTGTTAATGGAGGCGAAGAAGCTAGG
GTACCAGGGGGGTCTTCGTGATTGCATCTCTGAGCTGAAGAATATGCGAA
AGATCCTAGAAATCGACCTGGCCAAAGCAAAAGAATACTTGCATGATTTC
TCTCAGCTTGACACATACAGGAAGGGGCTGTTGTCATACCCTCAATTCAT
CAAAGCTTTCGGCTCCAAGGATTCAGACGCACTGAGGAGTCTATTTTGTG
TATTAGACGTGCAAGATCGGGGAGTGATCAATTTGGTGGAGTACACCACA
GGTTTAGCACTGATGGCAACGACCATCATATTTAGCTCAATGCCCCCCCT
GCTGGCCTATTATACGTGCGCCGCAGTCACTATCTACGTAGTGCTCGGCC
GCTTTTCCAGTCCAAACCCGCGCTTGAGATGGCTGAAGCTGAAAGACCTG
GAGAAAATTGAGACCGAAAAGAATGCCGCGCACTTGCCCGAGTCTGATCT
TGTGTCCCTTCTGTCTGGAAATCTATCGTCCTCCAAGCCCAATGTCGTTG
CAGGGATGCTGCAGTCTTCCTTGGCATCGTCGTCCTCCCCCTCGACATCC
CCAGAGCGCAAAGCTCCTGTGATGCGGAAGCTTTCCTTTCTCGCCACGAC
TGGAGTCGTCGAAAATCCCTTCATGAACAATACTTGGGAGATCTATAGGC
TGGAGCGCCTTAAATGTGCGGTCTTCGGTCCAGTGCTCATCCCTCCCCGT
CTGCTCCTGCTCATCGTGTCACTTCTTGGAGCCTATGGGTTCGGGAAGCT
CTCTACCATTGGCGCAGAACTAGAGCGCCCCATGCCTAGATGGCGCATTA
ACCTGCAGCATCCCATGAAGTTCTTTGCGCGCGGGATTATGTTTGCATTG
GGCTACCATTGGATCTCCATCAAAGGAAAGCAAGCAAGCCCACAACACGC
TCCTATCGTTGTCTCCAACCATTGCTCCTTCTGTGAAGCCATCTATCTAC
CCGGCCGCCTCTTGTCCATGGCTGTTTCCCGCCGGGAAAACGCTGCTATC
CCTTTTTTTGGAGGACTGATGCAGCAAG back to top
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