jgi.p|Nanoce1779_2|606437, mRNA_9336 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606437
Unique Name	mRNA_9336
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1967
Alignment location	scaffold_35:112120..114086 -

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Properties


Property Name	Value
TranscriptId	606523
Track	FilteredModels2
ProteinId	606437

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:112120..114086 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606437	gene_9336	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606437	mRNA_9336-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9336	CDS_9336	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:112120..114086-
coding sequence from alignment at scaffold_35:112120..114086-

mRNA sequence

>mRNA_9336 ID=mRNA_9336|Name=jgi.p|Nanoce1779_2|606437|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp
GCCTCCCAATCCTGTTGTTGTAATTGGTGTCGTGCCACTGTTGTTTTGCT
GTAGTATGATTAGGTGTGGTTGTGTGAGTGAAGCTCCTTGGTCTCGCGTG
GAAAGGGTGTTGTGATGGTGGGGAGGCTAAATAGCTTCAAGCGTGTGTGT
GCGTAGCGCGTATCAAAGGGATGACTGTGCAAGGCGCAATTTCTACTCGA
CACGCTCCTCCTCCTCCAGCGCTTATGATGTTTGTGTTTGAATCCACATA
ATCAAGGTTTTGTCCCAAAAGTTGCAGCTCCGGGAGATCGAGACGTTAGC
GTATGACCCACGGGGGTGTTTTGCGTTGCGCGTATTCGTTGCCTCCAGGG
TTTTGAAAATATAAGACCGCCCAGCCGTCCTTTGACCCTCAATTAAGGCT
GTGCTGTCTGAATGTGAACTTGGGCGGTGGAGTAAGCTTAGGGGATCAGA
CCAGTGTGTCATTGGTCCCTGCAAGGCGCGCAACAGCTGTCTTCCTGTCT
TTCCCCGCCCGCGCCTGCAGCGTGATTCCACTCCCTGCTTACTTCCCGTG
ACTCATCCAGTCAAACATCTTTCTCCCCCACCATCCCCACAACCAGGTCA
ACGACGATTTCAATATTTTCATATGCAGGGGTCCTTCGCGGCTGGACTTG
ATGAATAAGTGTTATTTGCATCAACCCTCCCCCCCTTCCTGCTTCTTGCT
TCGGATCGCCCCCGCCATGCCAGCGCACATTAATGTGCAATGCCAGGATA
CTGTCGAGCACACACACTTCACACCACACACATCACCACACTTCACAGGC
GCAACAAACGCCAGGCAAGCTGGTCACGAAGCGTCTAGCTTAAGCTTTCT
GTCCCCCGACCCCTCCCCCGACACCGCGCGGGCGAGATTCCCACGCTCCT
CTCCTACAATCCACCAGCAGCATTAACACCCGCATCGTCGGGGAAAGATG
AGCTTCCAATGGGATTCTCTGCGGGCGCACACCGGATGTCTAAAACTCTT
CGACCTGAACGACTTGACGGCCCAAGTGCGCCGACTCCAACTTCGGCAAG
AGAAGCAGCAAGAGCAGCAGCAACAAGAACAGCCTGATCGTCCACGTGCT
TACCATTTTCAACGACTGAGCCCATCTATGCTCTTCGCCCGTCGAGATGC
CGCCAATGCTGCTGCTGCTGCCGCTGCTGCTGCTCCGTCCTCATCCTCCT
CCTCTTCCTCCACTTCCATCCGCCCCTCAGTTGTGACTGAGAATGAGGCT
ACTGTTGGTGCTGATCTTGCCGCTGCTTCTTTCTTCAGTCGTTCTTCTGG
CAGCAGTAGCAGGAGTGGCACTGGCAGCAGGCTTTTCCCGGGGCGAGGCC
GCACATTGGTCGGAGAGAATGGGCTGGTGGTTTTCATTGAAGAGGAGGGG
GCGAAAGTCAGGGTAATGAGGGATAGGAGGAGGAAGGAGGACTTGCTTCA
GGTGAGGAGCGAAAGTGGGAGAGAAGCAGAGAGGGAGGGATGAAGGGTTA
GGATGAAGAGGCGCCGATTTTCTACGTGTATGCTATCTTCCATTGACCCC
TCCCGCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCCTCCCCCG
TAGGCATTCCCCTCTGCCGACCCCTGCCTCGTTGAAGCCGTATGGGAGCA
GGCCCATGAGGTGTTTGCCGCCGCCTCCACCATCCTTACGTCTCTGCAGA
ACAGCGGGCATCACACGAGGGAGGGATGGAAGGATGGAGGAGGGGACGGA
GGACAAGGGCTGAGGGTGGAGGATCCGATGGTCTGGCCGTCGGTGGAGGA
GGTGTGGGGGGAGGGAGGAAAGGAGACAAGGAAAGAAGGTGGGGGGGAGG
AAGGATGGGAGCATGTGGCGCTCTCAACGGGGGGGGAGCAGTGGGTGTTC
TTGGGAGAGGAGAAGGAGGAGGGGGAAGAGGGGGGAGGGGGGGAGGGAGG
GAGTGAAGGAGGGAAGG

protein sequence of jgi.p|Nanoce1779_2|606437

>mRNA_9336-protein ID=mRNA_9336-protein|Name=jgi.p|Nanoce1779_2|606437|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MSFQWDSLRAHTGCLKLFDLNDLTAQVRRLQLRQEKQQEQQQQEQPDRPR
AYHFQRLSPSMLFARRDAANAAAAAAAAAPSSSSSSSSTSIRPSVVTENE
ATVGADLAAASFFSRSSGSSSRSGTGSRLFPGRGRTLVGENGLVVFIEEE
GAKVRVMRDRRRKEDLLQVRSESGREAEREG*

mRNA from alignment at scaffold_35:112120..114086-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9336 ID=mRNA_9336|Name=jgi.p|Nanoce1779_2|606437|organism=Nannochloropsis oceanica|type=mRNA|length=1967bp|location=Sequence derived from alignment at scaffold_35:112120..114086- (Nannochloropsis oceanica)
GCCTCCCAATCCTGTTGTTGTAATTGGTGTCGTGCCACTGTTGTTTTGCT
GTAGTATGATTAGGTGTGGTTGTGTGAGTGAAGCTCCTTGGTCTCGCGTG
GAAAGGGTGTTGTGATGGTGGGGAGGCTAAATAGCTTCAAGCGTGTGTGT
GCGTAGCGCGTATCAAAGGGATGACTGTGCAAGGCGCAATTTCTACTCGA
CACGCTCCTCCTCCTCCAGCGCTTATGATGTTTGTGTTTGAATCCACATA
ATCAAGGTTTTGTCCCAAAAGTTGCAGCTCCGGGAGATCGAGACGTTAGC
GTATGACCCACGGGGGTGTTTTGCGTTGCGCGTATTCGTTGCCTCCAGGG
TTTTGAAAATATAAGACCGCCCAGCCGTCCTTTGACCCTCAATTAAGGCT
GTGCTGTCTGAATGTGAACTTGGGCGGTGGAGTAAGCTTAGGGGATCAGA
CCAGTGTGTCATTGGTCCCTGCAAGGCGCGCAACAGCTGTCTTCCTGTCT
TTCCCCGCCCGCGCCTGCAGCGTGATTCCACTCCCTGCTTACTTCCCGTG
ACTCATCCAGTCAAACATCTTTCTCCCCCACCATCCCCACAACCAGGTCA
ACGACGATTTCAATATTTTCATATGCAGGGGTCCTTCGCGGCTGGACTTG
ATGAATAAGTGTTATTTGCATCAACCCTCCCCCCCTTCCTGCTTCTTGCT
TCGGATCGCCCCCGCCATGCCAGCGCACATTAATGTGCAATGCCAGGATA
CTGTCGAGCACACACACTTCACACCACACACATCACCACACTTCACAGGC
GCAACAAACGCCAGGCAAGCTGGTCACGAAGCGTCTAGCTTAAGCTTTCT
GTCCCCCGACCCCTCCCCCGACACCGCGCGGGCGAGATTCCCACGCTCCT
CTCCTACAATCCACCAGCAGCATTAACACCCGCATCGTCGGGGAAAGATG
AGCTTCCAATGGGATTCTCTGCGGGCGCACACCGGATGTCTAAAACTCTT
CGACCTGAACGACTTGACGGCCCAAGTGCGCCGACTCCAACTTCGGCAAG
AGAAGCAGCAAGAGCAGCAGCAACAAGAACAGCCTGATCGTCCACGTGCT
TACCATTTTCAACGACTGAGCCCATCTATGCTCTTCGCCCGTCGAGATGC
CGCCAATGCTGCTGCTGCTGCCGCTGCTGCTGCTCCGTCCTCATCCTCCT
CCTCTTCCTCCACTTCCATCCGCCCCTCAGTTGTGACTGAGAATGAGGCT
ACTGTTGGTGCTGATCTTGCCGCTGCTTCTTTCTTCAGTCGTTCTTCTGG
CAGCAGTAGCAGGAGTGGCACTGGCAGCAGGCTTTTCCCGGGGCGAGGCC
GCACATTGGTCGGAGAGAATGGGCTGGTGGTTTTCATTGAAGAGGAGGGG
GCGAAAGTCAGGGTAATGAGGGATAGGAGGAGGAAGGAGGACTTGCTTCA
GGTGAGGAGCGAAAGTGGGAGAGAAGCAGAGAGGGAGGGATGAAGGGTTA
GGATGAAGAGGCGCCGATTTTCTACGTGTATGCTATCTTCCATTGACCCC
TCCCGCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCCCTCCTCCCCCG
TAGGCATTCCCCTCTGCCGACCCCTGCCTCGTTGAAGCCGTATGGGAGCA
GGCCCATGAGGTGTTTGCCGCCGCCTCCACCATCCTTACGTCTCTGCAGA
ACAGCGGGCATCACACGAGGGAGGGATGGAAGGATGGAGGAGGGGACGGA
GGACAAGGGCTGAGGGTGGAGGATCCGATGGTCTGGCCGTCGGTGGAGGA
GGTGTGGGGGGAGGGAGGAAAGGAGACAAGGAAAGAAGGTGGGGGGGAGG
AAGGATGGGAGCATGTGGCGCTCTCAACGGGGGGGGAGCAGTGGGTGTTC
TTGGGAGAGGAGAAGGAGGAGGGGGAAGAGGGGGGAGGGGGGGAGGGAGG
GAGTGAAGGAGGGAAGG

Coding sequence (CDS) from alignment at scaffold_35:112120..114086-

>mRNA_9336 ID=mRNA_9336|Name=jgi.p|Nanoce1779_2|606437|organism=Nannochloropsis oceanica|type=CDS|length=546bp|location=Sequence derived from alignment at scaffold_35:112120..114086- (Nannochloropsis oceanica)
ATGAGCTTCCAATGGGATTCTCTGCGGGCGCACACCGGATGTCTAAAACT
CTTCGACCTGAACGACTTGACGGCCCAAGTGCGCCGACTCCAACTTCGGC
AAGAGAAGCAGCAAGAGCAGCAGCAACAAGAACAGCCTGATCGTCCACGT
GCTTACCATTTTCAACGACTGAGCCCATCTATGCTCTTCGCCCGTCGAGA
TGCCGCCAATGCTGCTGCTGCTGCCGCTGCTGCTGCTCCGTCCTCATCCT
CCTCCTCTTCCTCCACTTCCATCCGCCCCTCAGTTGTGACTGAGAATGAG
GCTACTGTTGGTGCTGATCTTGCCGCTGCTTCTTTCTTCAGTCGTTCTTC
TGGCAGCAGTAGCAGGAGTGGCACTGGCAGCAGGCTTTTCCCGGGGCGAG
GCCGCACATTGGTCGGAGAGAATGGGCTGGTGGTTTTCATTGAAGAGGAG
GGGGCGAAAGTCAGGGTAATGAGGGATAGGAGGAGGAAGGAGGACTTGCT
TCAGGTGAGGAGCGAAAGTGGGAGAGAAGCAGAGAGGGAGGGATGA

Synonyms

Publications