jgi.p|Nanoce1779_2|271130, mRNA_9335 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|271130
Unique NamemRNA_9335
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length972
Alignment locationscaffold_35:111314..112451 -

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Properties
Property NameValue
TranscriptId271216
TrackFilteredModels2
ProteinId271130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:111314..112451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|271130gene_9335Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|271130mRNA_9335-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9335CDS_9335Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9335 ID=mRNA_9335|Name=jgi.p|Nanoce1779_2|271130|organism=Nannochloropsis oceanica|type=mRNA|length=972bp
AGCCGTATGGGAGCAGGCCCATGAGGTGTTTGCCGCCGCCTCCACCATCC
TTACGTCTCTGCAGAACAGCGGGCATCACACGAGGGAGGGATGGAAGGAT
GGAGGAGGGGACGGAGGACAAGGGCTGAGGGTGGAGGATCCGATGGTCTG
GCCGTCGGTGGAGGAGGTGTGGGGGGAGGGAGGAAAGGAGACAAGGAAAG
AAGGTGGGGGGGAGGAAGGATGGGAGCATGTGGCGCTCTCAACGGGGGGG
GAGCAGTGGGTGTTCTTGGGAGAGGAGAAGGAGGAGGGGGAAGAGGGGGG
AGGGGGGGAGGGAGGGAGTGAAGGAGGGAAGGAGGTGATGAGCTACAAGG
CGGCGTTGGTGTCGAGTTTAATGGAGTTGGCGGAGGGAGAGGAATGGCCC
ATGGCACCTGTGAGACGGACTCTAGCGTCCCTCTCTTCTTATGGGCGGAA
AAAGAAGGCAAGGACGTTGCAAGAGGAGGAGGCAGAGGAGGGGAGGGAGG
AAGAGATGGAAGGGGTGGGTGGGTGGATGGAGGAGTATGAGCTACAGAAG
GCCGTGGCGGTTAGGACGAGGAGGAGTGTGGGGAGGAAGAGGCTGACAGA
GACGGGAAAGAGGAGGATGGATGGCTCGGGTGAGGGGACTTACTGTATGT
ATAGAGTTCTGAATGAGGGAAGGATTACGTAAGAAAGAATGATTTGGCAG
ACGGAATGACGAAGAATAGGTTATGAGTAGGAGAGGGGATCCGTAGATGA
TATATATGGAGGAAGAAGGGGAAGTAGGCCTAGAGAGTGACATATAAGAG
GATAGAAAAAAGGGGTGTGGAGTAACCTCCCTTTAGGGGGGGGAACGAGG
AGTAGATGAAACCAACTTGTGAACATGAAGATCACAGACACAAATACAAA
GAAGATAGGAGGAAAGTAAGAAGAAGTGCAACGTCGGCATGGCCATTTCT
AGTGGCTTTGGTGGTTTGCTCG
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protein sequence of jgi.p|Nanoce1779_2|271130

>mRNA_9335-protein ID=mRNA_9335-protein|Name=jgi.p|Nanoce1779_2|271130|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MVWPSVEEVWGEGGKETRKEGGGEEGWEHVALSTGGEQWVFLGEEKEEGE
EGGGGEGGSEGGKEVMSYKAALVSSLMELAEGEEWPMAPVRRTLASLSSY
GRKKKARTLQEEEAEEGREEEMEGVGGWMEEYELQKAVAVRTRRSVGRKR
LTETGKRRMDGSGEGTYCMYRVLNEGRIT*
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mRNA from alignment at scaffold_35:111314..112451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9335 ID=mRNA_9335|Name=jgi.p|Nanoce1779_2|271130|organism=Nannochloropsis oceanica|type=mRNA|length=1138bp|location=Sequence derived from alignment at scaffold_35:111314..112451- (Nannochloropsis oceanica)
AGCCGTATGGGAGCAGGCCCATGAGGTGTTTGCCGCCGCCTCCACCATCC
TTACGTCTCTGCAGAACAGCGGGCATCACACGAGGGAGGGATGGAAGGAT
GGAGGAGGGGACGGAGGACAAGGGCTGAGGGTGGAGGATCCGATGGTCTG
GCCGTCGGTGGAGGAGGTGTGGGGGGAGGGAGGAAAGGAGACAAGGAAAG
AAGGTGGGGGGGAGGAAGGATGGGAGCATGTGGCGCTCTCAACGGGGGGG
GAGCAGTGGGTGTTCTTGGGAGAGGAGAAGGAGGAGGGGGAAGAGGGGGG
AGGGGGGGAGGGAGGGAGTGAAGGAGGGAAGGAGGTGATGAGCTACAAGG
CGGCGTTGGTGTCGAGTTTAATGGAGTTGGCGGAGGGAGAGGAATGGCCC
ATGGCACCTGTGAGACGGACTCTAGCGTCCCTCTCTTCTTATGGGCGGAA
AAAGAAGGCAAGGACGTTGCAAGAGGAGGAGGCAGAGGAGGGGAGGGAGG
AAGAGATGGAAGGGGTGGGTGGGTGGATGGAGGAGTATGAGCTACAGAAG
GCCGTGGCGGTTAGGACGAGGAGGAGTGTGGGGAGGAAGAGGCTGACAGA
GACGGGAAAGAGGAGGATGGCAGCAAAGTTGGTGTCGAGAGCGGCGCCGA
GAGGGGCAGGGGAGGATGGAGAGGGAGATGAGGGGATTGACGTGTGGTGA
GGAGGGAGGAGGAAGAGGAAAAGGAGGAGAAGGAACCGTCGCAGGTGGTG
TACAAAGGAGGGGAGCGATAAAGGAGGGGGTAAAGGATGGCTCGGGTGAG
GGGACTTACTGTATGTATAGAGTTCTGAATGAGGGAAGGATTACGTAAGA
AAGAATGATTTGGCAGACGGAATGACGAAGAATAGGTTATGAGTAGGAGA
GGGGATCCGTAGATGATATATATGGAGGAAGAAGGGGAAGTAGGCCTAGA
GAGTGACATATAAGAGGATAGAAAAAAGGGGTGTGGAGTAACCTCCCTTT
AGGGGGGGGAACGAGGAGTAGATGAAACCAACTTGTGAACATGAAGATCA
CAGACACAAATACAAAGAAGATAGGAGGAAAGTAAGAAGAAGTGCAACGT
CGGCATGGCCATTTCTAGTGGCTTTGGTGGTTTGCTCG
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Coding sequence (CDS) from alignment at scaffold_35:111314..112451-

>mRNA_9335 ID=mRNA_9335|Name=jgi.p|Nanoce1779_2|271130|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_35:111314..112451- (Nannochloropsis oceanica)
GATGGCTCGGGTGAGGGGACTTACTGTATGTATAGAGTTCTGAATGAGGG
AAGGATTACGTAAATGGTCTGGCCGTCGGTGGAGGAGGTGTGGGGGGAGG
GAGGAAAGGAGACAAGGAAAGAAGGTGGGGGGGAGGAAGGATGGGAGCAT
GTGGCGCTCTCAACGGGGGGGGAGCAGTGGGTGTTCTTGGGAGAGGAGAA
GGAGGAGGGGGAAGAGGGGGGAGGGGGGGAGGGAGGGAGTGAAGGAGGGA
AGGAGGTGATGAGCTACAAGGCGGCGTTGGTGTCGAGTTTAATGGAGTTG
GCGGAGGGAGAGGAATGGCCCATGGCACCTGTGAGACGGACTCTAGCGTC
CCTCTCTTCTTATGGGCGGAAAAAGAAGGCAAGGACGTTGCAAGAGGAGG
AGGCAGAGGAGGGGAGGGAGGAAGAGATGGAAGGGGTGGGTGGGTGGATG
GAGGAGTATGAGCTACAGAAGGCCGTGGCGGTTAGGACGAGGAGGAGTGT
GGGGAGGAAGAGGCTGACAGAGACGGGAAAGAGGAGGATGGATGGCTCGG
GTGAGGGGACTTACTGTATGTATAGAGTTCTGAATGAGGGAAGGATTACG
TAAATGGTCTGGCCGTCGGTGGAGGAGGTGTGGGGGGAGGGAGGAAAGGA
GACAAGGAAAGAAGGTGGGGGGGAGGAAGGATGGGAGCATGTGGCGCTCT
CAACGGGGGGGGAGCAGTGGGTGTTCTTGGGAGAGGAGAAGGAGGAGGGG
GAAGAGGGGGGAGGGGGGGAGGGAGGGAGTGAAGGAGGGAAGGAGGTGAT
GAGCTACAAGGCGGCGTTGGTGTCGAGTTTAATGGAGTTGGCGGAGGGAG
AGGAATGGCCCATGGCACCTGTGAGACGGACTCTAGCGTCCCTCTCTTCT
TATGGGCGGAAAAAGAAGGCAAGGACGTTGCAAGAGGAGGAGGCAGAGGA
GGGGAGGGAGGAAGAGATGGAAGGGGTGGGTGGGTGGATGGAGGAGTATG
AGCTACAGAAGGCCGTGGCGGTTAGGACGAGGAGGAGTGTGGGGAGGAAG
AGGCTGACAGAGACGGGAAAGAGGAGGATG
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Synonyms
Publications