jgi.p|Nanoce1779_2|606432, mRNA_9334 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606432
Unique Name	mRNA_9334
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2329
Alignment location	scaffold_35:109471..111799 -

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Properties


Property Name	Value
TranscriptId	606518
Track	FilteredModels2
ProteinId	606432

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:109471..111799 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606432	gene_9334	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606432	mRNA_9334-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9334	CDS_9334	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:109471..111799-
coding sequence from alignment at scaffold_35:109471..111799-

mRNA sequence

>mRNA_9334 ID=mRNA_9334|Name=jgi.p|Nanoce1779_2|606432|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp
GGGGCAGGGGAGGATGGAGAGGGAGATGAGGGGATTGACGTGTGGTGAGG
AGGGAGGAGGAAGAGGAAAAGGAGGAGAAGGAACCGTCGCAGGTGGTGTA
CAAAGGAGGGGAGCGATAAAGGAGGGGGTAAAGGATGGCTCGGGTGAGGG
GACTTACTGTATGTATAGAGTTCTGAATGAGGGAAGGATTACGTAAGAAA
GAATGATTTGGCAGACGGAATGACGAAGAATAGGTTATGAGTAGGAGAGG
GGATCCGTAGATGATATATATGGAGGAAGAAGGGGAAGTAGGCCTAGAGA
GTGACATATAAGAGGATAGAAAAAAGGGGTGTGGAGTAACCTCCCTTTAG
GGGGGGGAACGAGGAGTAGATGAAACCAACTTGTGAACATGAAGATCACA
GACACAAATACAAAGAAGATAGGAGGAAAGTAAGAAGAAGTGCAACGTCG
GCATGGCCATTTCTAGTGGCTTTGGTGGTTTGCTCGATCAGCAAGGCACG
GGTCTAAGCCACGCGCCTCACTTTGTTCTTTCTTCTTGCTCCCTACACAC
AACCCACCTGACCAAACTGCTAATAAACGCCCATTCTTGCTTATTTACCC
GTAAATGTGTCCGACTACCTGTGCAAGTAGATGTCGCAACCGACACGCTT
CAACCCACTTGTGTTGGCGAGGATGAAGCCAAGGCACACGTCCGAATATC
CGATGCCTCCTTCTCACCTTTACACCACCCACACGCAGTCACCTCTTACA
CACATACATGCGCATATAATTCATATGACAAATAGGTGAAATGGCCCCAG
CACCACCGGTCCGGCGGCTCACTGGGCGCGCCATGATCATCAGCCTCCCC
CAAATGTTCCTATCGCTCTTCGTCCTCGCGCTCCTTCCCTCTCACGCCTA
CAAGCCACACCAGCCCAAGACCCCGTCCCACAACAAGCCCTCTCCACCCT
TGCACTCCCGTGCCACCTATCTCCAACAGTCCCTGGGCCGTCTCCTCCTC
GCGGGCGGATCCGGCCTCCTGACCCCCGCCCTCCTCTCCCTCCCCCAGCC
CGCTGCCGCCATGGTAGACGTGGGTCTTCGTAAACAATACGTGGATCCCA
CCGAGCTGTGGCAGCTTGAATATCCAGTGGGATGGTACTTGTCTCGTCGT
GACCCCACGCCGCAAAGCGAGGCCCCCGCGGGCATTGTCAAGGCGAGTTC
CACCGTCCTTGTCGTCGCCGACTACACCACAGGTGCCACCGCTAGTGTGG
TGCGCACAAGCCTGTCCTCGCTCATCAAGGAAGGGATGGGGTGGGGTACG
CTCATGCCTATGTTTGGTGGGCTGGGGCCGATCTCCAAATTCGAAGATTT
GCTGGAAGGAAAGGGCGTGGCGGCATTATTGATGCGGGATCGAGATGGGC
AGCTCAAGGTCTCAGCTATGGCACCTCCTCAACTAGGCAAGATACTGGAA
AGTGAAACAAGCGCCAATGACGGCTTTTTGTCGCGGCTGGTGGATTGTAC
ACCACAGGGTAAATCGATGGAGTTCAAGGTTAAGACGCCCATCAATCGTA
TTCCTGGGAGTGCGGGGAGCGCCATGATGGGAGGGGCTGGACAAGGGGGA
GGAGGAGGGATGAGTGACGGGAGGCTGCCGATACGTGGCCGTCCGTTACG
AAAAACGTCGGACGTGTTCAAAGCAATTGGAGATGCCAGTCCGATTGAAC
GGCGGGCGAACCCGTCGAGTGAGAGCGTGAGCACGACGCGGGCTGGAACG
GCCCCGACATTGATTAGGCAACAGGCGGATGTGAGGGTGAGTAAGGCCAA
GGCGTACTTGAGAGATGATGGAAGCATTCTTACGGCATGGGTATCGGCAG
ACAAGCGGAGTTGGGAAGACCCTGATGCTTCGGCGCGGTTGGATGCTATT
TTAGAATCGTTTGACGTGGCACCACGATAGGGTGAGATAATGGGGCAAAT
GCTAAAGGAGAGGAGGTCGGGGAAGAGACGCGTAGTGTACTGTAGAGATT
GAAGGCGCGGGAAAACAATGATAAAAACATTAAGAAATGCTTGGGAATTT
CACACCTGCAGTACTTTAATTTTTGTGTCATTAGATCTTTTCCTTGTATG
TGTTCTTTCTTCCTCGTGGGAGTACATCCATTAATGAGAGGCCTTACGGC
GGTGGCCCGATCAGGTCACGGTATCTTAGCAGGTGTAGACATCTCTGCAA
ACGAGCTCGCACAGCCATGGCCGACTTGATAATGTATCATAACAGTCAAT
CATATGGAACCCAAGGGTGTGTATTGTAATCAAGATCCTCTGTCGGCAAA
TACACGCTCGCCACATCTTTTTTCTTTCC

protein sequence of jgi.p|Nanoce1779_2|606432

>mRNA_9334-protein ID=mRNA_9334-protein|Name=jgi.p|Nanoce1779_2|606432|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MAPAPPVRRLTGRAMIISLPQMFLSLFVLALLPSHAYKPHQPKTPSHNKP
SPPLHSRATYLQQSLGRLLLAGGSGLLTPALLSLPQPAAAMVDVGLRKQY
VDPTELWQLEYPVGWYLSRRDPTPQSEAPAGIVKASSTVLVVADYTTGAT
ASVVRTSLSSLIKEGMGWGTLMPMFGGLGPISKFEDLLEGKGVAALLMRD
RDGQLKVSAMAPPQLGKILESETSANDGFLSRLVDCTPQGKSMEFKVKTP
INRIPGSAGSAMMGGAGQGGGGGMSDGRLPIRGRPLRKTSDVFKAIGDAS
PIERRANPSSESVSTTRAGTAPTLIRQQADVRVSKAKAYLRDDGSILTAW
VSADKRSWEDPDASARLDAILESFDVAPR*

mRNA from alignment at scaffold_35:109471..111799-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9334 ID=mRNA_9334|Name=jgi.p|Nanoce1779_2|606432|organism=Nannochloropsis oceanica|type=mRNA|length=2329bp|location=Sequence derived from alignment at scaffold_35:109471..111799- (Nannochloropsis oceanica)
GGGGCAGGGGAGGATGGAGAGGGAGATGAGGGGATTGACGTGTGGTGAGG
AGGGAGGAGGAAGAGGAAAAGGAGGAGAAGGAACCGTCGCAGGTGGTGTA
CAAAGGAGGGGAGCGATAAAGGAGGGGGTAAAGGATGGCTCGGGTGAGGG
GACTTACTGTATGTATAGAGTTCTGAATGAGGGAAGGATTACGTAAGAAA
GAATGATTTGGCAGACGGAATGACGAAGAATAGGTTATGAGTAGGAGAGG
GGATCCGTAGATGATATATATGGAGGAAGAAGGGGAAGTAGGCCTAGAGA
GTGACATATAAGAGGATAGAAAAAAGGGGTGTGGAGTAACCTCCCTTTAG
GGGGGGGAACGAGGAGTAGATGAAACCAACTTGTGAACATGAAGATCACA
GACACAAATACAAAGAAGATAGGAGGAAAGTAAGAAGAAGTGCAACGTCG
GCATGGCCATTTCTAGTGGCTTTGGTGGTTTGCTCGATCAGCAAGGCACG
GGTCTAAGCCACGCGCCTCACTTTGTTCTTTCTTCTTGCTCCCTACACAC
AACCCACCTGACCAAACTGCTAATAAACGCCCATTCTTGCTTATTTACCC
GTAAATGTGTCCGACTACCTGTGCAAGTAGATGTCGCAACCGACACGCTT
CAACCCACTTGTGTTGGCGAGGATGAAGCCAAGGCACACGTCCGAATATC
CGATGCCTCCTTCTCACCTTTACACCACCCACACGCAGTCACCTCTTACA
CACATACATGCGCATATAATTCATATGACAAATAGGTGAAATGGCCCCAG
CACCACCGGTCCGGCGGCTCACTGGGCGCGCCATGATCATCAGCCTCCCC
CAAATGTTCCTATCGCTCTTCGTCCTCGCGCTCCTTCCCTCTCACGCCTA
CAAGCCACACCAGCCCAAGACCCCGTCCCACAACAAGCCCTCTCCACCCT
TGCACTCCCGTGCCACCTATCTCCAACAGTCCCTGGGCCGTCTCCTCCTC
GCGGGCGGATCCGGCCTCCTGACCCCCGCCCTCCTCTCCCTCCCCCAGCC
CGCTGCCGCCATGGTAGACGTGGGTCTTCGTAAACAATACGTGGATCCCA
CCGAGCTGTGGCAGCTTGAATATCCAGTGGGATGGTACTTGTCTCGTCGT
GACCCCACGCCGCAAAGCGAGGCCCCCGCGGGCATTGTCAAGGCGAGTTC
CACCGTCCTTGTCGTCGCCGACTACACCACAGGTGCCACCGCTAGTGTGG
TGCGCACAAGCCTGTCCTCGCTCATCAAGGAAGGGATGGGGTGGGGTACG
CTCATGCCTATGTTTGGTGGGCTGGGGCCGATCTCCAAATTCGAAGATTT
GCTGGAAGGAAAGGGCGTGGCGGCATTATTGATGCGGGATCGAGATGGGC
AGCTCAAGGTCTCAGCTATGGCACCTCCTCAACTAGGCAAGATACTGGAA
AGTGAAACAAGCGCCAATGACGGCTTTTTGTCGCGGCTGGTGGATTGTAC
ACCACAGGGTAAATCGATGGAGTTCAAGGTTAAGACGCCCATCAATCGTA
TTCCTGGGAGTGCGGGGAGCGCCATGATGGGAGGGGCTGGACAAGGGGGA
GGAGGAGGGATGAGTGACGGGAGGCTGCCGATACGTGGCCGTCCGTTACG
AAAAACGTCGGACGTGTTCAAAGCAATTGGAGATGCCAGTCCGATTGAAC
GGCGGGCGAACCCGTCGAGTGAGAGCGTGAGCACGACGCGGGCTGGAACG
GCCCCGACATTGATTAGGCAACAGGCGGATGTGAGGGTGAGTAAGGCCAA
GGCGTACTTGAGAGATGATGGAAGCATTCTTACGGCATGGGTATCGGCAG
ACAAGCGGAGTTGGGAAGACCCTGATGCTTCGGCGCGGTTGGATGCTATT
TTAGAATCGTTTGACGTGGCACCACGATAGGGTGAGATAATGGGGCAAAT
GCTAAAGGAGAGGAGGTCGGGGAAGAGACGCGTAGTGTACTGTAGAGATT
GAAGGCGCGGGAAAACAATGATAAAAACATTAAGAAATGCTTGGGAATTT
CACACCTGCAGTACTTTAATTTTTGTGTCATTAGATCTTTTCCTTGTATG
TGTTCTTTCTTCCTCGTGGGAGTACATCCATTAATGAGAGGCCTTACGGC
GGTGGCCCGATCAGGTCACGGTATCTTAGCAGGTGTAGACATCTCTGCAA
ACGAGCTCGCACAGCCATGGCCGACTTGATAATGTATCATAACAGTCAAT
CATATGGAACCCAAGGGTGTGTATTGTAATCAAGATCCTCTGTCGGCAAA
TACACGCTCGCCACATCTTTTTTCTTTCC

Coding sequence (CDS) from alignment at scaffold_35:109471..111799-

>mRNA_9334 ID=mRNA_9334|Name=jgi.p|Nanoce1779_2|606432|organism=Nannochloropsis oceanica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_35:109471..111799- (Nannochloropsis oceanica)
ATGGCCCCAGCACCACCGGTCCGGCGGCTCACTGGGCGCGCCATGATCAT
CAGCCTCCCCCAAATGTTCCTATCGCTCTTCGTCCTCGCGCTCCTTCCCT
CTCACGCCTACAAGCCACACCAGCCCAAGACCCCGTCCCACAACAAGCCC
TCTCCACCCTTGCACTCCCGTGCCACCTATCTCCAACAGTCCCTGGGCCG
TCTCCTCCTCGCGGGCGGATCCGGCCTCCTGACCCCCGCCCTCCTCTCCC
TCCCCCAGCCCGCTGCCGCCATGGTAGACGTGGGTCTTCGTAAACAATAC
GTGGATCCCACCGAGCTGTGGCAGCTTGAATATCCAGTGGGATGGTACTT
GTCTCGTCGTGACCCCACGCCGCAAAGCGAGGCCCCCGCGGGCATTGTCA
AGGCGAGTTCCACCGTCCTTGTCGTCGCCGACTACACCACAGGTGCCACC
GCTAGTGTGGTGCGCACAAGCCTGTCCTCGCTCATCAAGGAAGGGATGGG
GTGGGGTACGCTCATGCCTATGTTTGGTGGGCTGGGGCCGATCTCCAAAT
TCGAAGATTTGCTGGAAGGAAAGGGCGTGGCGGCATTATTGATGCGGGAT
CGAGATGGGCAGCTCAAGGTCTCAGCTATGGCACCTCCTCAACTAGGCAA
GATACTGGAAAGTGAAACAAGCGCCAATGACGGCTTTTTGTCGCGGCTGG
TGGATTGTACACCACAGGGTAAATCGATGGAGTTCAAGGTTAAGACGCCC
ATCAATCGTATTCCTGGGAGTGCGGGGAGCGCCATGATGGGAGGGGCTGG
ACAAGGGGGAGGAGGAGGGATGAGTGACGGGAGGCTGCCGATACGTGGCC
GTCCGTTACGAAAAACGTCGGACGTGTTCAAAGCAATTGGAGATGCCAGT
CCGATTGAACGGCGGGCGAACCCGTCGAGTGAGAGCGTGAGCACGACGCG
GGCTGGAACGGCCCCGACATTGATTAGGCAACAGGCGGATGTGAGGGTGA
GTAAGGCCAAGGCGTACTTGAGAGATGATGGAAGCATTCTTACGGCATGG
GTATCGGCAGACAAGCGGAGTTGGGAAGACCCTGATGCTTCGGCGCGGTT
GGATGCTATTTTAGAATCGTTTGACGTGGCACCACGATAG

Synonyms

Publications