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Properties
| Property Name | Value |
|---|
| TranscriptId | 606516 |
| Track | FilteredModels2 |
| ProteinId | 606430 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_35 | supercontig | scaffold_35:105732..109168 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9333 ID=mRNA_9333|Name=jgi.p|Nanoce1779_2|606430|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp
ACAGGCACGCAAACGGAGGCGCCAAGACCATGCGGCAACGCAGGCGGAGG
CTGTCGGCGGTGTTTGCGGCCGGCAGCCTGACGTTGCTGGTCTTGTTGAG
CATGGGCCAAGGAGCTATTGCCGACATCGCCGCCGGTGCCGGGCAGACTG
GCAGATCCGCCCACACCACGAAAATAGCCTTAATGGAAATGCCTGATTCT
GTAGGTCCGCTGAGGAGCAAGGACAAGATCATCCCCTCGGTGGCATTGGA
GGATGTGTGGATAGAGAGGGAGAAAGAGGAAGAGGATGAGGAAGTTCATG
TCGAAGGAAACCTAATTCCCGCGCCATTACCGGCGAAAGCCACGAGCGAA
AAAAAGTTGCGACAGCTGGATAGACAAGAGAAGACTACTACTCCATCTCC
TCCCACCAAGGCCGCCACAGCAACCGTAGGAGCGGCAGCCCCTCTAGACC
CAGCAGTCGTTGTTCCCACCAAGGAAACCCGTATATTACCCTGGGAGACG
AAAGCATGGCAACGAGATCTTGACGAACTCAATGCCTTGCTTGACATGGA
CATTGAACCTGCCGCCATTGACACAGAGGCCTCATCCCTCGCTGCCGAGA
TTGGGAGTGACGGGCACTTTGAGACTATGGGTAGTATGGGAAATCTTATG
AACCTCCTCTCCCCCTCACCAGACCCTGCTTGGCCTTTCTGCTCCCCTGT
TGGCATCCTGTATAAAACAGGATTGGTTTGCCCGGTCATGAATATTGCGG
CCAAGATTCTGATGAGGTCTCCCCCGGACTTTGAGAAATTGACAACGGAG
CATCATTGTCCTAACCCTACTGGGGAGCTCCCAGAACAGTTGGAGGAGCT
GAGGGAAGGTGGTTTGCCGATGCCGATGATTATTCCCAAGGAGGTGGTGG
AGAGGGAGAAGCCTACATATGCGTGGTATTTGACGCATGTTTACAATATG
TACGCCTTTGCCTTCTCCTACGCGGACGACATCCTCAGCACCCACAGCAA
CGCAGACTACCACACGCTCCGCCCCCTAAAGCCCAAGGGATGGGAGAACC
AAAACGTGTACTTCGTTAAGGACCCCGAAGGTTGGAATTGGCCCATGGGG
CAGTCACTCACGAAGGGGAATAGCATGGTGGTCTTCTTCTGCGGAACCAT
GTTCCCGGGCGGATGGGAGGCAGACTTTAAGACGAGCTTTGCGGCGAAAT
CGGAGACGGAGAAGACGGGTTTGCCGGGCCGAGTGCATGATGGTAAGTTT
TACTTTTTTTAAGTCGTAGATTCATCTGTTCGTATATTTATTTATTTATT
TATTTATATATCTGTCGTGTAGAAACTTATTTATTTATTCATTTATTATT
TAATTTTATGTTTGAGCTTTTGATACTCACTAAGCGACTAAAAAACCGAA
AGCTGCCACGTCCTCCTAAATGAAGTCACGTCCTTCTACATGTGCTTCTT
GTAATATGTTCTCCTGTCTCTCCCTCCTCTTCCTAACTCCCCTTGAGGCT
TTTTCGACTTCGCCCAGCAGTTTTTCGAGGATTTCACCCGACAGGTCGAT
CTTTACGGTATTCAAAGCGTGACATTCGCTGGACACAGCCTGGGCGGAGC
TATCTCACAGGTGGCCGCGGCCTTCATGGTCAAGCATTACAGTCACATCA
AAATTAATTGCGTCACATTCGGATCACCACAGGTCGGCGATCGGACCTTC
ACTGATTTCTTGAACGCCCGTGTCAATCTCCGACGCATGGCCTACATTGG
ATCCGGGCAGCTTAATGAGCCGGCAGAACGAGGCCTTAATTACGGCCTGG
GCGACGTGATCACTCAGATGCCTCTGGCGTGCTACAACCTCTCCATGCCC
TTTTGCTCGCATATGACGTTTATCGACAACAAGGACGATCTCTCAAGTTT
CCAATTCGTCATGGCGGCGGGCAACGTTCCGATCTACGCTTCCGACCTGC
GAAATACCCAGGAGTGGCTGAAAAAGGAAAATTTTCTTTTTGGAGCCCGG
ACGTTTAGAGACATCCCAGAAGGAGCAATGGCTTGTCACATATGCTCCTA
TGCGTGCTGGACCTCGGCCGCAACTGACGACCCTGACAACCGGTGTTATT
TCTCCGGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGGGCAGGCGGAA
GGGAGGTATTTGTGCGAGATTGATTTG back to topprotein sequence of jgi.p|Nanoce1779_2|606430 >mRNA_9333-protein ID=mRNA_9333-protein|Name=jgi.p|Nanoce1779_2|606430|organism=Nannochloropsis oceanica|type=polypeptide|length=411bp
MRQRRRRLSAVFAAGSLTLLVLLSMGQGAIADIAAGAGQTGRSAHTTKIA
LMEMPDSVGPLRSKDKIIPSVALEDVWIEREKEEEDEEVHVEGNLIPAPL
PAKATSEKKLRQLDRQEKTTTPSPPTKAATATVGAAAPLDPAVVVPTKET
RILPWETKAWQRDLDELNALLDMDIEPAAIDTEASSLAAEIGSDGHFETM
GSMGNLMNLLSPSPDPAWPFCSPVGILYKTGLVCPVMNIAAKILMRSPPD
FEKLTTEHHCPNPTGELPEQLEELREGGLPMPMIIPKEVVEREKPTYAWY
LTHVYNMYAFAFSYADDILSTHSNADYHTLRPLKPKGWENQNVYFVKDPE
GWNWPMGQSLTKGNSMVVFFCGTMFPGGWEADFKTSFAAKSETEKTGLPG
RVHDGKFYFF* back to topmRNA from alignment at scaffold_35:105732..109168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9333 ID=mRNA_9333|Name=jgi.p|Nanoce1779_2|606430|organism=Nannochloropsis oceanica|type=mRNA|length=3437bp|location=Sequence derived from alignment at scaffold_35:105732..109168- (Nannochloropsis oceanica)
ACAGGCACGCAAACGGAGGCGCCAAGACCATGCGGCAACGCAGGCGGAGG
CTGTCGGCGGTGTTTGCGGCCGGCAGCCTGACGTTGCTGGTCTTGTTGAG
CATGGGCCAAGGAGCTATTGCCGACATCGCCGCCGGTGCCGGGCAGACTG
GCAGATCCGCCCACACCACGAAAATAGCCTTAATGGAAATGCCTGATTCT
GTAGGTCCGCTGAGGAGCAAGGACAAGATCATCCCCTCGGTGGCATTGGA
GGATGTGTGGATAGAGAGGGAGAAAGAGGAAGAGGATGAGGAAGTTCATG
TCGAAGGAAACCTAATTCCCGCGCCATTACCGGCGAAAGCCACGAGCGAA
AAAAAGTTGCGACAGCTGGATAGACAAGAGAAGACTACTACTCCATCTCC
TCCCACCAAGGCCGCCACAGCAACCGTAGGAGCGGCAGCCCCTCTAGACC
CAGCAGTCGTTGTTCCCACCAAGGAAACCCGTATATTACCCTGGGAGACG
AAAGCATGGCAACGAGATCTTGACGAACTCAATGCCTTGCTTGACATGGA
CATTGAACCTGCCGCCATTGACACAGAGGCCTCATCCCTCGCTGCCGAGA
TTGGGAGTGACGGGCACTTTGAGACTATGGGTAGTATGGGAAATCTTATG
AACCTCCTCTCCCCCTCACCAGACCCTGCTTGGCCTTTCTGCTCCCCTGT
TGGCATCCTGTATAAAACAGGATTGGTTTGCCCGGTCATGAATATTGCGG
CCAAGATTCTGATGAGGTCTCCCCCGGACTTTGAGAAATTGACAACGGAG
CATCATTGTCCTAACCCTACTGGGGAGCTCCCAGAACAGTTGGAGGAGCT
GAGGGAAGGTGGTTTGCCGATGCCGATGATTATTCCCAAGGAGGTGGTGG
AGAGGGAGAAGCCTACATATGCGTGGTATTTGACGCATGTTTACAATATG
TAAGTCTGTAGGTTGTGTATGTATGTATGTATATATTTGTTTATTTTATC
TGTATTATTATTTACGTATGATTTACGTATTCAGGTGTTTTTATTTCATA
TCCATTACCGTATGTATTCGTTAAAATTTTCGGTCATGCCATATATTATC
GTTTACTCATTTCGCACAACGCATCGATTTCCCTTCCTAGGTACGCCTTT
GCCTTCTCCTACGCGGACGACATCCTCAGCACCCACAGCAACGCAGACTA
CCACACGCTCCGCCCCCTAAAGCCCAAGGGATGGGAGAACCAAAACGTGT
ACTTCGTTAAGGACCCCGAAGGTTGGAATTGGCCCATGGGGCAGTCACTC
ACGAAGGGGAATAGCATGGTGGTCTTCTTCTGCGGAACCATGTTCCCGGG
CGGATGGGAGGCAGACTTTAAGACGAGCTTTGCGGCGAAATCGGAGACGG
AGAAGACGGGTTTGCCGGGCCGAGTGCATGATGGTAAGTTTTACTTTTTT
TAAGTCGTAGATTCATCTGTTCGTATATTTATTTATTTATTTATTTATAT
ATCTGTCGTGTAGAAACTTATTTATTTATTCATTTATTATTTAATTTTAT
GTTTGAGCTTTTGATACTCACTAAGCGACTAAAAAACCGAAAGCTGCCAC
GTCCTCCTAAATGAAGTCACGTCCTTCTACATGTGCTTCTTGTAATATGT
TCTCCTGTCTCTCCCTCCTCTTCCTAACTCCCCTTGAGGCTTTTTCGACT
TCGCCCAGCAGTTTTTCGAGGATTTCACCCGACAGGTCGATCTTTACGGT
ATTCAAAGCGTGACATTCGCTGGACACAGGTAAGGGGGCAGGCAGGGGGA
AGGGGAGGGGGGGGGAACCTATCATCATCACGGTCATCTGCAAACTCATG
TCACTGACTCATGCATCCCTCCCTCACTATCTCATTTCCTCCTTCCTAAT
TCTCATTTCCTCCTTCCTAATTCTCTTTGCCTTTCAGCCTGGGCGGAGCT
ATCTCACAGGTGGCCGCGGCCTTCATGGTCAAGCATTACAGTCACATCAA
AATTAATTGCGTCACATTCGGGTACGTTGTCTTCTCCCTCCCTCCCTCCC
TCCTTCCCTCCCTTCCTCCCTTGCTTCCTTCCTCCCTTACCTTATGGCTT
CTGACAGTGTCATACTTTAATAATATAATTATTATTGTTAATAATTCTAA
AAACGCAGCACATCGCCCATCTGGATAGAAGGACCTCTCACTTCTCTTCC
TCCCTCCCTCCCCCCTTCCTTATTCAGATCACCACAGGTCGGCGATCGGA
CCTTCACTGATTTCTTGAACGCCCGTGTCAATCTCCGACGCATGGCCTAC
ATTGGATCCGGGCAGCTTAATGAGCCGGCAGAACGAGGCCTTAATTACGG
CCTGGGCGACGTGATCACTCAGGTACCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGCCTGCCTGCCTGCCTTGAGGGACACATCGA
CCTTCACAAGAGAGATGGCTTTTCCTTACCTTTTTTTGAAAGTTGGAGGG
AAAAGAAACGGCAAGTTGATCCAGTATTTCAAACATCCACCACTCTATGC
TGTTTATCATGTGATCTTCGTCAACCGCTCCCTCACTCAATTCCTCCCTC
CCTCCCTCCTTCCCCAGATGCCTCTGGCGTGCTACAACCTCTCCATGCCC
TTTTGCTCGCATATGACGTTTATCGACAACAAGGACGATCTCTCAAGTTT
CCAATTCGTCATGGCGGCGGGCAACGTTCCGATCTACGCTTCCGACCTGC
GAAATACCCAGGAGTGGCTGAAAAAGGTAAGCGGGGGGGAAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGTGCTAAGGGAGGGAGAGGGAGG
AAGAGGGAGGGAGGGAGGGAGAGGGAGGGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGAGGGAGTGCTAAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGTG
CTAAGGGAGGGAGAGGAAGGAAGAGGGAGGGAGGGAAGGAGGGAGTGCTA
AGAGAGGGAGAGGGAGGAAGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAA
GGGAAGGAGCGACGACCATCCTCTCGATTCTGTGGGGGGCGGTGCGTGTG
TCTTCCGTCCTTTCGTAAGAAAAAGGGAGTCAAGAAGGGAAAGAGCGCTC
GTGTGTGTATGTGTGTGTGTGTGTGTTCTCCCCTTCCATCCGTTCACGTC
TTCCCTTCCCCCCCCCTCCCTCGGTCCCTTCCTCAGGAAAATTTTCTTTT
TGGAGCCCGGACGTTTAGAGACATCCCAGAAGGAGCAATGGCTTGTCACA
TATGCTCCTATGCGTGCTGGACCTCGGCCGCAACTGACGACCCTGACAAC
CGGTGTTATTTCTCCGGGAAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGG
GCAGGCGGAAGGGAGGTATTTGTGCGAGATTGATTTG back to topCoding sequence (CDS) from alignment at scaffold_35:105732..109168- >mRNA_9333 ID=mRNA_9333|Name=jgi.p|Nanoce1779_2|606430|organism=Nannochloropsis oceanica|type=CDS|length=2466bp|location=Sequence derived from alignment at scaffold_35:105732..109168- (Nannochloropsis oceanica)
GTACGCCTTTGCCTTCTCCTACGCGGACGACATCCTCAGCACCCACAGCA
ACGCAGACTACCACACGCTCCGCCCCCTAAAGCCCAAGGGATGGGAGAAC
CAAAACGTGTACTTCGTTAAGGACCCCGAAGGTTGGAATTGGCCCATGGG
GCAGTCACTCACGAAGGGGAATAGCATGGTGGTCTTCTTCTGCGGAACCA
TGTTCCCGGGCGGATGGGAGGCAGACTTTAAGACGAGCTTTGCGGCGAAA
TCGGAGACGGAGAAGACGGGTTTGCCGGGCCGAGTGCATGATGGTAAGTT
TTACTTTTTTTAAATGCGGCAACGCAGGCGGAGGCTGTCGGCGGTGTTTG
CGGCCGGCAGCCTGACGTTGCTGGTCTTGTTGAGCATGGGCCAAGGAGCT
ATTGCCGACATCGCCGCCGGTGCCGGGCAGACTGGCAGATCCGCCCACAC
CACGAAAATAGCCTTAATGGAAATGCCTGATTCTGTAGGTCCGCTGAGGA
GCAAGGACAAGATCATCCCCTCGGTGGCATTGGAGGATGTGTGGATAGAG
AGGGAGAAAGAGGAAGAGGATGAGGAAGTTCATGTCGAAGGAAACCTAAT
TCCCGCGCCATTACCGGCGAAAGCCACGAGCGAAAAAAAGTTGCGACAGC
TGGATAGACAAGAGAAGACTACTACTCCATCTCCTCCCACCAAGGCCGCC
ACAGCAACCGTAGGAGCGGCAGCCCCTCTAGACCCAGCAGTCGTTGTTCC
CACCAAGGAAACCCGTATATTACCCTGGGAGACGAAAGCATGGCAACGAG
ATCTTGACGAACTCAATGCCTTGCTTGACATGGACATTGAACCTGCCGCC
ATTGACACAGAGGCCTCATCCCTCGCTGCCGAGATTGGGAGTGACGGGCA
CTTTGAGACTATGGGTAGTATGGGAAATCTTATGAACCTCCTCTCCCCCT
CACCAGACCCTGCTTGGCCTTTCTGCTCCCCTGTTGGCATCCTGTATAAA
ACAGGATTGGTTTGCCCGGTCATGAATATTGCGGCCAAGATTCTGATGAG
GTCTCCCCCGGACTTTGAGAAATTGACAACGGAGCATCATTGTCCTAACC
CTACTGGGGAGCTCCCAGAACAGTTGGAGGAGCTGAGGGAAGGTGGTTTG
CCGATGCCGATGATTATTCCCAAGGAGGTGGTGGAGAGGGAGAAGCCTAC
ATATGCGTGGTATTTGACGCATGTTTACAATATGTACGCCTTTGCCTTCT
CCTACGCGGACGACATCCTCAGCACCCACAGCAACGCAGACTACCACACG
CTCCGCCCCCTAAAGCCCAAGGGATGGGAGAACCAAAACGTGTACTTCGT
TAAGGACCCCGAAGGTTGGAATTGGCCCATGGGGCAGTCACTCACGAAGG
GGAATAGCATGGTGGTCTTCTTCTGCGGAACCATGTTCCCGGGCGGATGG
GAGGCAGACTTTAAGACGAGCTTTGCGGCGAAATCGGAGACGGAGAAGAC
GGGTTTGCCGGGCCGAGTGCATGATGGTAAGTTTTACTTTTTTTAAATGC
GGCAACGCAGGCGGAGGCTGTCGGCGGTGTTTGCGGCCGGCAGCCTGACG
TTGCTGGTCTTGTTGAGCATGGGCCAAGGAGCTATTGCCGACATCGCCGC
CGGTGCCGGGCAGACTGGCAGATCCGCCCACACCACGAAAATAGCCTTAA
TGGAAATGCCTGATTCTGTAGGTCCGCTGAGGAGCAAGGACAAGATCATC
CCCTCGGTGGCATTGGAGGATGTGTGGATAGAGAGGGAGAAAGAGGAAGA
GGATGAGGAAGTTCATGTCGAAGGAAACCTAATTCCCGCGCCATTACCGG
CGAAAGCCACGAGCGAAAAAAAGTTGCGACAGCTGGATAGACAAGAGAAG
ACTACTACTCCATCTCCTCCCACCAAGGCCGCCACAGCAACCGTAGGAGC
GGCAGCCCCTCTAGACCCAGCAGTCGTTGTTCCCACCAAGGAAACCCGTA
TATTACCCTGGGAGACGAAAGCATGGCAACGAGATCTTGACGAACTCAAT
GCCTTGCTTGACATGGACATTGAACCTGCCGCCATTGACACAGAGGCCTC
ATCCCTCGCTGCCGAGATTGGGAGTGACGGGCACTTTGAGACTATGGGTA
GTATGGGAAATCTTATGAACCTCCTCTCCCCCTCACCAGACCCTGCTTGG
CCTTTCTGCTCCCCTGTTGGCATCCTGTATAAAACAGGATTGGTTTGCCC
GGTCATGAATATTGCGGCCAAGATTCTGATGAGGTCTCCCCCGGACTTTG
AGAAATTGACAACGGAGCATCATTGTCCTAACCCTACTGGGGAGCTCCCA
GAACAGTTGGAGGAGCTGAGGGAAGGTGGTTTGCCGATGCCGATGATTAT
TCCCAAGGAGGTGGTGGAGAGGGAGAAGCCTACATATGCGTGGTATTTGA
CGCATGTTTACAATAT back to top
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