jgi.p|Nanoce1779_2|606426, mRNA_9331 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606426
Unique Name	mRNA_9331
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1127
Alignment location	scaffold_35:103564..104995 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606512
Track	FilteredModels2
ProteinId	606426

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:103564..104995 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606426	gene_9331	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606426	mRNA_9331-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9331	CDS_9331	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:103564..104995+
coding sequence from alignment at scaffold_35:103564..104995+

mRNA sequence

>mRNA_9331 ID=mRNA_9331|Name=jgi.p|Nanoce1779_2|606426|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp
ACAGGCGGAGGCAGACCAGCTCCCTCCCCACTCCAAAAAATATGTTCGGC
TTCGGCCGCAACCGCCGGGCTGCAGACCGAGACCTTGATGCCTTGAAGCG
GCAGCAAATAGATGGGCTCAAGCAAGCAGTGTCTACCATCAGGGCTGTCA
ACTCGGGCCAGCAAGATGCCACCGTCTTCGACCTCCCCCTACCATCCGCC
TCCGCCACTGCCGTCCTTCGCGTTTCCCTTCCCAGTTCTTTCCCTGACCA
TCCTCCCTCCCTCCGCCTTCTAGGCCTCAGCGTGCGTCATCCCTGGGTCG
ACGGCCAAGGCGTCGTGTCATGCCACCCCAAATTAAACCCGTGGCACGCC
TCGAACTCGCTGGCCGAAGTGTGTGTGAGCGTCATGCAAGAAATTACCAA
GACTGTGGGCGGTTCTCCCATTGTAGGAGTGCCGGGGGACAGGTGGGGAG
GAGGGGTGGGAGGAGGGGGACAAGGGGGAGGTGGAGGAGGTGGTTTGGGA
CCGATGCAGCCACCGCCATTGCGAGGCGGAGGTGGAGATGGGAGTGGAAT
GATACCCGGGGGATCCACCCATTCGGTATCTTCCTCCCCTCCTCGTCCAA
GCGTCGTCCTTCCCCCCCTCCCCAACGCCCTCCCTCCGTCCCTCCTTGCT
GCCTCCTTGGACGAGCTCAACAACCTCCTCTCCGACGAGGTAGCCTTCTC
CATGTTCCTCTCCAACACACGGGAAGTAAAGGAATGCAACCGGCAGCTGG
AGGCCATCCGGAGGACGAACGCTGATATAGCTCAGGAGACTTTGGAGAAG
CGAGGGGCCGTGACAGAGGCGAGGGAGGAGATGCGACAAGCCCTAGAGAT
TCTGAGGGAGATCGAAAAAGCCTATGAACGGAAGGTGGGGAGGGTAGGGG
AGAAGGGTGGGAGGGAAGGAGGGATAGAGGGGGTGTATCGGGCGCTGGAG
AAGGAGGCGGCGGAGAGTGAGAAGAGGAGCGAGGAATGCGCGAAAGCTTT
GGTGTCAGGGGAGATGGACGTGGCAGAATGGCAGGAAAAATACCTGAAGG
AGAGGAAATTGTTTCACGCACGCAGCGCAAAACTGGAGAAGATACAGGGG
ATGAGGGGGGGGGGGAGGTAAGAGTGG

protein sequence of jgi.p|Nanoce1779_2|606426

>mRNA_9331-protein ID=mRNA_9331-protein|Name=jgi.p|Nanoce1779_2|606426|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MFGFGRNRRAADRDLDALKRQQIDGLKQAVSTIRAVNSGQQDATVFDLPL
PSASATAVLRVSLPSSFPDHPPSLRLLGLSVRHPWVDGQGVVSCHPKLNP
WHASNSLAEVCVSVMQEITKTVGGSPIVGVPGDRWGGGVGGGGQGGGGGG
GLGPMQPPPLRGGGGDGSGMIPGGSTHSVSSSPPRPSVVLPPLPNALPPS
LLAASLDELNNLLSDEVAFSMFLSNTREVKECNRQLEAIRRTNADIAQET
LEKRGAVTEAREEMRQALEILREIEKAYERKVGRVGEKGGREGGIEGVYR
ALEKEAAESEKRSEECAKALVSGEMDVAEWQEKYLKERKLFHARSAKLEK
IQGMRGGGR*

mRNA from alignment at scaffold_35:103564..104995+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9331 ID=mRNA_9331|Name=jgi.p|Nanoce1779_2|606426|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at scaffold_35:103564..104995+ (Nannochloropsis oceanica)
ACAGGCGGAGGCAGACCAGCTCCCTCCCCACTCCAAAAAATATGTTCGGC
TTCGGCCGCAACCGCCGGGCTGCAGACCGAGACCTTGATGCCTTGAAGCG
GCAGCAAATAGATGGGCTCAAGCAAGCAGTGTCTACCATCAGGGCTGTCA
ACTCGGTATGTGCGCGAGGGACAAGGGGGGGATTTATGTCGTGTTGGCAA
GTCTCTCGGAAGATGAGGGATGCTCCCCCGGCAGCACTTAGACGCTCAAA
TATGTGCCTCGAGGCCCCTGCGCGCACCAATGGCTTCCCAGTCACATGGC
GAGTGCTATCGTGCGTGTATCCATCCTATTCTTGACGCAGTGCGTGTGGA
CGACTCCCTTCACCCAATCGTTTCACGTCCCTTCTCTCCTCAACCCCTTC
ACCCTTCCCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCCCCCCCAGGGCCAGCAAGATGCCACCGTCTTCGACCTCCCCCTACCAT
CCGCCTCCGCCACTGCCGTCCTTCGCGTTTCCCTTCCCAGTTCTTTCCCT
GACCATCCTCCCTCCCTCCGCCTTCTAGGCCTCAGCGTGCGTCATCCCTG
GGTCGACGGCCAAGGCGTCGTGTCATGCCACCCCAAATTAAACCCGTGGC
ACGCCTCGAACTCGCTGGCCGAAGTGTGTGTGAGCGTCATGCAAGAAATT
ACCAAGACTGTGGGCGGTTCTCCCATTGTAGGAGTGCCGGGGGACAGGTG
GGGAGGAGGGGTGGGAGGAGGGGGACAAGGGGGAGGTGGAGGAGGTGGTT
TGGGACCGATGCAGCCACCGCCATTGCGAGGCGGAGGTGGAGATGGGAGT
GGAATGATACCCGGGGGATCCACCCATTCGGTATCTTCCTCCCCTCCTCG
TCCAAGCGTCGTCCTTCCCCCCCTCCCCAACGCCCTCCCTCCGTCCCTCC
TTGCTGCCTCCTTGGACGAGCTCAACAACCTCCTCTCCGACGAGGTAGCC
TTCTCCATGTTCCTCTCCAACACACGGGAAGTAAAGGAATGCAACCGGCA
GCTGGAGGCCATCCGGAGGACGAACGCTGATATAGCTCAGGAGACTTTGG
AGAAGCGAGGGGCCGTGACAGAGGCGAGGGAGGAGATGCGACAAGCCCTA
GAGATTCTGAGGGAGATCGAAAAAGCCTATGAACGGAAGGTGGGGAGGGT
AGGGGAGAAGGGTGGGAGGGAAGGAGGGATAGAGGGGGTGTATCGGGCGC
TGGAGAAGGAGGCGGCGGAGAGTGAGAAGAGGAGCGAGGAATGCGCGAAA
GCTTTGGTGTCAGGGGAGATGGACGTGGCAGAATGGCAGGAAAAATACCT
GAAGGAGAGGAAATTGTTTCACGCACGCAGCGCAAAACTGGAGAAGATAC
AGGGGATGAGGGGGGGGGGGAGGTAAGAGTGG

Coding sequence (CDS) from alignment at scaffold_35:103564..104995+

>mRNA_9331 ID=mRNA_9331|Name=jgi.p|Nanoce1779_2|606426|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_35:103564..104995+ (Nannochloropsis oceanica)
ATGTTCGGCTTCGGCCGCAACCGCCGGGCTGCAGACCGAGACCTTGATGC
CTTGAAGCGGCAGCAAATAGATGGGCTCAAGCAAGCAGTGTCTACCATCA
GGGCTGTCAACTCGGGCCAGCAAGATGCCACCGTCTTCGACCTCCCCCTA
CCATCCGCCTCCGCCACTGCCGTCCTTCGCGTTTCCCTTCCCAGTTCTTT
CCCTGACCATCCTCCCTCCCTCCGCCTTCTAGGCCTCAGCGTGCGTCATC
CCTGGGTCGACGGCCAAGGCGTCGTGTCATGCCACCCCAAATTAAACCCG
TGGCACGCCTCGAACTCGCTGGCCGAAGTGTGTGTGAGCGTCATGCAAGA
AATTACCAAGACTGTGGGCGGTTCTCCCATTGTAGGAGTGCCGGGGGACA
GGTGGGGAGGAGGGGTGGGAGGAGGGGGACAAGGGGGAGGTGGAGGAGGT
GGTTTGGGACCGATGCAGCCACCGCCATTGCGAGGCGGAGGTGGAGATGG
GAGTGGAATGATACCCGGGGGATCCACCCATTCGGTATCTTCCTCCCCTC
CTCGTCCAAGCGTCGTCCTTCCCCCCCTCCCCAACGCCCTCCCTCCGTCC
CTCCTTGCTGCCTCCTTGGACGAGCTCAACAACCTCCTCTCCGACGAGGT
AGCCTTCTCCATGTTCCTCTCCAACACACGGGAAGTAAAGGAATGCAACC
GGCAGCTGGAGGCCATCCGGAGGACGAACGCTGATATAGCTCAGGAGACT
TTGGAGAAGCGAGGGGCCGTGACAGAGGCGAGGGAGGAGATGCGACAAGC
CCTAGAGATTCTGAGGGAGATCGAAAAAGCCTATGAACGGAAGGTGGGGA
GGGTAGGGGAGAAGGGTGGGAGGGAAGGAGGGATAGAGGGGGTGTATCGG
GCGCTGGAGAAGGAGGCGGCGGAGAGTGAGAAGAGGAGCGAGGAATGCGC
GAAAGCTTTGGTGTCAGGGGAGATGGACGTGGCAGAATGGCAGGAAAAAT
ACCTGAAGGAGAGGAAATTGTTTCACGCACGCAGCGCAAAACTGGAGAAG
ATACAGGGGATGAGGGGGGGGGGGAGGTAAATGTTCGGCTTCGGCCGCAA
CCGCCGGGCTGCAGACCGAGACCTTGATGCCTTGAAGCGGCAGCAAATAG
ATGGGCTCAAGCAAGCAGTGTCTACCATCAGGGCTGTCAACTCGGGCCAG
CAAGATGCCACCGTCTTCGACCTCCCCCTACCATCCGCCTCCGCCACTGC
CGTCCTTCGCGTTTCCCTTCCCAGTTCTTTCCCTGACCATCCTCCCTCCC
TCCGCCTTCTAGGCCTCAGCGTGCGTCATCCCTGGGTCGACGGCCAAGGC
GTCGTGTCATGCCACCCCAAATTAAACCCGTGGCACGCCTCGAACTCGCT
GGCCGAAGTGTGTGTGAGCGTCATGCAAGAAATTACCAAGACTGTGGGCG
GTTCTCCCATTGTAGGAGTGCCGGGGGACAGGTGGGGAGGAGGGGTGGGA
GGAGGGGGACAAGGGGGAGGTGGAGGAGGTGGTTTGGGACCGATGCAGCC
ACCGCCATTGCGAGGCGGAGGTGGAGATGGGAGTGGAATGATACCCGGGG
GATCCACCCATTCGGTATCTTCCTCCCCTCCTCGTCCAAGCGTCGTCCTT
CCCCCCCTCCCCAACGCCCTCCCTCCGTCCCTCCTTGCTGCCTCCTTGGA
CGAGCTCAACAACCTCCTCTCCGACGAGGTAGCCTTCTCCATGTTCCTCT
CCAACACACGGGAAGTAAAGGAATGCAACCGGCAGCTGGAGGCCATCCGG
AGGACGAACGCTGATATAGCTCAGGAGACTTTGGAGAAGCGAGGGGCCGT
GACAGAGGCGAGGGAGGAGATGCGACAAGCCCTAGAGATTCTGAGGGAGA
TCGAAAAAGCCTATGAACGGAAGGTGGGGAGGGTAGGGGAGAAGGGTGGG
AGGGAAGGAGGGATAGAGGGGGTGTATCGGGCGCTGGAGAAGGAGGCGGC
GGAGAGTGAGAAGAGGAGCGAGGAATGCGCGAAAGCTTTGGTGTCAGGGG
AGATGGACGTGGCAGAATGGCAGGAAAAATACCTGAAGGAGAGGAAATTG
TTTCACGCACGCAGCGCAAAACTGGAGAAGATACAGGGGATGAGGGGGGG
GGGGAGGTAA

Synonyms

Publications