jgi.p|Nanoce1779_2|574703, mRNA_933 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574703
Unique Name	mRNA_933
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2046
Alignment location	scaffold_2:784802..786847 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574789
Track	FilteredModels2
ProteinId	574703

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:784802..786847 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574703	gene_933	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574703	mRNA_933-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_933	CDS_933	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:784802..786847+
coding sequence from alignment at scaffold_2:784802..786847+

mRNA sequence

>mRNA_933 ID=mRNA_933|Name=jgi.p|Nanoce1779_2|574703|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp
GTGGCACAAGGCTTGTGCCCTCCTCAACCCTTCATAGAGACCACAAATCC
ACGGCTTTGAGACTCAGGCTTTACGCCTCGGGTATGCATCACTACACTTT
GTTTTATTTCCAAGTCATCTGGCGCTTTACATTGGTCCTCACTTTCGACT
TCATCTCTAAGGATAACACATATTCTACCGTACCCTACTCCTTTCCCCAT
CCTACCCTTGTAGCATCAAACCACCATGGCGCCTCATAACCAGGAGGTCG
ACCAGATGCAGAGCCGATCCTCGCCGGCCTATCTGGGATGCGTGGCGGAG
CTGGTCAAGGAACTAATGCACGCCTACGATGCCCGCCTCCCCACAAACCT
AACGCGCTTGACGGCCGACCTGGCCCGGAAGCGGAAGCTCAAAGCAGTGC
CTCGTTTGATGGACATTATTGCGGCCGTGCCTGAGGACTACCGAGACAAG
CTTTTGCCATTCATCAAGTCCAAGCCCGTGCGGACAGCCTCAGGCATTGC
CGTGGTGGCCGTCATGTGCAAGCCCCATCGCTGCCCACACATCGCAATGA
CTGGCAATGTCTGCGTCTACTGCCCCGGCGGGCCTGACTCGGACTTTGAA
TATTCCACGCAGGCCTACACGGGATATGAACCCACAAGCATGCGGGCGAT
TCGGGCGAGGTACCATCCCTACGCGCAGACGCGCGGGCGTGTAGACCAGT
TGAAGCGCTTGGGGCACAGCGTGGACAAGGTAGAGTTTATCGTCATGGGT
GGGACGTTCATGTCCTTGGCGGAGGATTATAAGGACTGGTTTATTCGGAA
TTTACATGATGCTTTATCGGGACATTCGTCTGGGAGTGTGGCGGAGGCTG
TGGCTTACATGGAGCAAAGTCAATGCAAGTGTATCGGGATCACCATAGAG
ACCCGCCCGGACTACTGCCTCAAGCCTCACCTGAACGAAATGCTCACCTA
TGGCTGCACTCGCATCGAGATTGGGGTCCAAAGTATCTATGAAGACGTGG
CGCGGGATACGAATCGAGGGCATACTGTGCATGCTGTCTGCAACTCATTC
CAGCTTGCAAAGGACTGCGGATTCAAAGTAGTCACGCACATGATGCCTGA
CCTCCCAAACATGGGCATGGAACGTGACTTGGCCGGTTTCCAGGAATTCT
TTGAAAATCCCCTTTTTCGGGCTGATGGCCTCAAGATCTACCCTACCCTC
GTCATTCGTGGTACAGGCCTGTACGAGCTGTGGAAAACAGGCTGCTACAA
AAACTACAACCCTGACGAGCTGGTTGACCTGGTGGCAAAGCTCCTTGCCC
TCGTTCCACCCTGGACCCGCGTTTATCGGATTCAACGCGATATTCCGATG
CCACTTGTCTCAGCAGGAGTCGAAAATGGGAATTTGCGGGAACTCGCGCT
TAGACGGATGGCGGAGTTGGACTTGCCTTGTAAGGACGTGCGAACGCGAG
AAGTGGGTATTCGGGCAATTCATCAGAGCACGCGCCCGCAGGAAGTCGAG
TTAGTGCGCAGGGATTATTGTGCGAATGGTGGGTGGGAGACATTTTTGAG
TTATGAGGATCCCCATCAGGATATTTTGATTGGGTTGTTGCGGTTGCGGA
GACCTAGTGGGGTGTCGTTTCGACCGGAGATAAAGTCGGGGCAAGCTTCG
GTTGTAAGGGAGCTACACGTGTATGGTTCCGCGGTGCCGGTGCATGATCG
GGATCCGAACAAATTCCAGCACCAGGGGTACGGGACGCTGTTGATGGAGG
AGGCCGAGAGAATTGCCTGGTTTGAGCATGGGTCGGAAAAGTTGGTGGTT
ATTGCTGGGGTGGGGACGAGGCACTATTACCGCAAGTTGGGTTATGAATT
GGATGGACCTTACATGAGTAAATGGTTGGGAGGGAATGAAATGGGAGAGA
TGGAAGGAGTACAACGTTATGTAAGGGGGAAGGAGGAAGGCTGGAGGGAT
GAATTGCAGGGTTTAATGCTATGAGACGCTCAAGCTGTTGAATTGCGAAA
TAGAGAAATAAAGTGTTCAAAACAATGTACAGAAAAATGAGAGTCT

protein sequence of jgi.p|Nanoce1779_2|574703

>mRNA_933-protein ID=mRNA_933-protein|Name=jgi.p|Nanoce1779_2|574703|organism=Nannochloropsis oceanica|type=polypeptide|length=583bp
MAPHNQEVDQMQSRSSPAYLGCVAELVKELMHAYDARLPTNLTRLTADLA
RKRKLKAVPRLMDIIAAVPEDYRDKLLPFIKSKPVRTASGIAVVAVMCKP
HRCPHIAMTGNVCVYCPGGPDSDFEYSTQAYTGYEPTSMRAIRARYHPYA
QTRGRVDQLKRLGHSVDKVEFIVMGGTFMSLAEDYKDWFIRNLHDALSGH
SSGSVAEAVAYMEQSQCKCIGITIETRPDYCLKPHLNEMLTYGCTRIEIG
VQSIYEDVARDTNRGHTVHAVCNSFQLAKDCGFKVVTHMMPDLPNMGMER
DLAGFQEFFENPLFRADGLKIYPTLVIRGTGLYELWKTGCYKNYNPDELV
DLVAKLLALVPPWTRVYRIQRDIPMPLVSAGVENGNLRELALRRMAELDL
PCKDVRTREVGIRAIHQSTRPQEVELVRRDYCANGGWETFLSYEDPHQDI
LIGLLRLRRPSGVSFRPEIKSGQASVVRELHVYGSAVPVHDRDPNKFQHQ
GYGTLLMEEAERIAWFEHGSEKLVVIAGVGTRHYYRKLGYELDGPYMSKW
LGGNEMGEMEGVQRYVRGKEEGWRDELQGLML*

mRNA from alignment at scaffold_2:784802..786847+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_933 ID=mRNA_933|Name=jgi.p|Nanoce1779_2|574703|organism=Nannochloropsis oceanica|type=mRNA|length=2046bp|location=Sequence derived from alignment at scaffold_2:784802..786847+ (Nannochloropsis oceanica)
GTGGCACAAGGCTTGTGCCCTCCTCAACCCTTCATAGAGACCACAAATCC
ACGGCTTTGAGACTCAGGCTTTACGCCTCGGGTATGCATCACTACACTTT
GTTTTATTTCCAAGTCATCTGGCGCTTTACATTGGTCCTCACTTTCGACT
TCATCTCTAAGGATAACACATATTCTACCGTACCCTACTCCTTTCCCCAT
CCTACCCTTGTAGCATCAAACCACCATGGCGCCTCATAACCAGGAGGTCG
ACCAGATGCAGAGCCGATCCTCGCCGGCCTATCTGGGATGCGTGGCGGAG
CTGGTCAAGGAACTAATGCACGCCTACGATGCCCGCCTCCCCACAAACCT
AACGCGCTTGACGGCCGACCTGGCCCGGAAGCGGAAGCTCAAAGCAGTGC
CTCGTTTGATGGACATTATTGCGGCCGTGCCTGAGGACTACCGAGACAAG
CTTTTGCCATTCATCAAGTCCAAGCCCGTGCGGACAGCCTCAGGCATTGC
CGTGGTGGCCGTCATGTGCAAGCCCCATCGCTGCCCACACATCGCAATGA
CTGGCAATGTCTGCGTCTACTGCCCCGGCGGGCCTGACTCGGACTTTGAA
TATTCCACGCAGGCCTACACGGGATATGAACCCACAAGCATGCGGGCGAT
TCGGGCGAGGTACCATCCCTACGCGCAGACGCGCGGGCGTGTAGACCAGT
TGAAGCGCTTGGGGCACAGCGTGGACAAGGTAGAGTTTATCGTCATGGGT
GGGACGTTCATGTCCTTGGCGGAGGATTATAAGGACTGGTTTATTCGGAA
TTTACATGATGCTTTATCGGGACATTCGTCTGGGAGTGTGGCGGAGGCTG
TGGCTTACATGGAGCAAAGTCAATGCAAGTGTATCGGGATCACCATAGAG
ACCCGCCCGGACTACTGCCTCAAGCCTCACCTGAACGAAATGCTCACCTA
TGGCTGCACTCGCATCGAGATTGGGGTCCAAAGTATCTATGAAGACGTGG
CGCGGGATACGAATCGAGGGCATACTGTGCATGCTGTCTGCAACTCATTC
CAGCTTGCAAAGGACTGCGGATTCAAAGTAGTCACGCACATGATGCCTGA
CCTCCCAAACATGGGCATGGAACGTGACTTGGCCGGTTTCCAGGAATTCT
TTGAAAATCCCCTTTTTCGGGCTGATGGCCTCAAGATCTACCCTACCCTC
GTCATTCGTGGTACAGGCCTGTACGAGCTGTGGAAAACAGGCTGCTACAA
AAACTACAACCCTGACGAGCTGGTTGACCTGGTGGCAAAGCTCCTTGCCC
TCGTTCCACCCTGGACCCGCGTTTATCGGATTCAACGCGATATTCCGATG
CCACTTGTCTCAGCAGGAGTCGAAAATGGGAATTTGCGGGAACTCGCGCT
TAGACGGATGGCGGAGTTGGACTTGCCTTGTAAGGACGTGCGAACGCGAG
AAGTGGGTATTCGGGCAATTCATCAGAGCACGCGCCCGCAGGAAGTCGAG
TTAGTGCGCAGGGATTATTGTGCGAATGGTGGGTGGGAGACATTTTTGAG
TTATGAGGATCCCCATCAGGATATTTTGATTGGGTTGTTGCGGTTGCGGA
GACCTAGTGGGGTGTCGTTTCGACCGGAGATAAAGTCGGGGCAAGCTTCG
GTTGTAAGGGAGCTACACGTGTATGGTTCCGCGGTGCCGGTGCATGATCG
GGATCCGAACAAATTCCAGCACCAGGGGTACGGGACGCTGTTGATGGAGG
AGGCCGAGAGAATTGCCTGGTTTGAGCATGGGTCGGAAAAGTTGGTGGTT
ATTGCTGGGGTGGGGACGAGGCACTATTACCGCAAGTTGGGTTATGAATT
GGATGGACCTTACATGAGTAAATGGTTGGGAGGGAATGAAATGGGAGAGA
TGGAAGGAGTACAACGTTATGTAAGGGGGAAGGAGGAAGGCTGGAGGGAT
GAATTGCAGGGTTTAATGCTATGAGACGCTCAAGCTGTTGAATTGCGAAA
TAGAGAAATAAAGTGTTCAAAACAATGTACAGAAAAATGAGAGTCT

Coding sequence (CDS) from alignment at scaffold_2:784802..786847+

>mRNA_933 ID=mRNA_933|Name=jgi.p|Nanoce1779_2|574703|organism=Nannochloropsis oceanica|type=CDS|length=1749bp|location=Sequence derived from alignment at scaffold_2:784802..786847+ (Nannochloropsis oceanica)
ATGGCGCCTCATAACCAGGAGGTCGACCAGATGCAGAGCCGATCCTCGCC
GGCCTATCTGGGATGCGTGGCGGAGCTGGTCAAGGAACTAATGCACGCCT
ACGATGCCCGCCTCCCCACAAACCTAACGCGCTTGACGGCCGACCTGGCC
CGGAAGCGGAAGCTCAAAGCAGTGCCTCGTTTGATGGACATTATTGCGGC
CGTGCCTGAGGACTACCGAGACAAGCTTTTGCCATTCATCAAGTCCAAGC
CCGTGCGGACAGCCTCAGGCATTGCCGTGGTGGCCGTCATGTGCAAGCCC
CATCGCTGCCCACACATCGCAATGACTGGCAATGTCTGCGTCTACTGCCC
CGGCGGGCCTGACTCGGACTTTGAATATTCCACGCAGGCCTACACGGGAT
ATGAACCCACAAGCATGCGGGCGATTCGGGCGAGGTACCATCCCTACGCG
CAGACGCGCGGGCGTGTAGACCAGTTGAAGCGCTTGGGGCACAGCGTGGA
CAAGGTAGAGTTTATCGTCATGGGTGGGACGTTCATGTCCTTGGCGGAGG
ATTATAAGGACTGGTTTATTCGGAATTTACATGATGCTTTATCGGGACAT
TCGTCTGGGAGTGTGGCGGAGGCTGTGGCTTACATGGAGCAAAGTCAATG
CAAGTGTATCGGGATCACCATAGAGACCCGCCCGGACTACTGCCTCAAGC
CTCACCTGAACGAAATGCTCACCTATGGCTGCACTCGCATCGAGATTGGG
GTCCAAAGTATCTATGAAGACGTGGCGCGGGATACGAATCGAGGGCATAC
TGTGCATGCTGTCTGCAACTCATTCCAGCTTGCAAAGGACTGCGGATTCA
AAGTAGTCACGCACATGATGCCTGACCTCCCAAACATGGGCATGGAACGT
GACTTGGCCGGTTTCCAGGAATTCTTTGAAAATCCCCTTTTTCGGGCTGA
TGGCCTCAAGATCTACCCTACCCTCGTCATTCGTGGTACAGGCCTGTACG
AGCTGTGGAAAACAGGCTGCTACAAAAACTACAACCCTGACGAGCTGGTT
GACCTGGTGGCAAAGCTCCTTGCCCTCGTTCCACCCTGGACCCGCGTTTA
TCGGATTCAACGCGATATTCCGATGCCACTTGTCTCAGCAGGAGTCGAAA
ATGGGAATTTGCGGGAACTCGCGCTTAGACGGATGGCGGAGTTGGACTTG
CCTTGTAAGGACGTGCGAACGCGAGAAGTGGGTATTCGGGCAATTCATCA
GAGCACGCGCCCGCAGGAAGTCGAGTTAGTGCGCAGGGATTATTGTGCGA
ATGGTGGGTGGGAGACATTTTTGAGTTATGAGGATCCCCATCAGGATATT
TTGATTGGGTTGTTGCGGTTGCGGAGACCTAGTGGGGTGTCGTTTCGACC
GGAGATAAAGTCGGGGCAAGCTTCGGTTGTAAGGGAGCTACACGTGTATG
GTTCCGCGGTGCCGGTGCATGATCGGGATCCGAACAAATTCCAGCACCAG
GGGTACGGGACGCTGTTGATGGAGGAGGCCGAGAGAATTGCCTGGTTTGA
GCATGGGTCGGAAAAGTTGGTGGTTATTGCTGGGGTGGGGACGAGGCACT
ATTACCGCAAGTTGGGTTATGAATTGGATGGACCTTACATGAGTAAATGG
TTGGGAGGGAATGAAATGGGAGAGATGGAAGGAGTACAACGTTATGTAAG
GGGGAAGGAGGAAGGCTGGAGGGATGAATTGCAGGGTTTAATGCTATGA

Synonyms

Publications