jgi.p|Nanoce1779_2|606410, mRNA_9327 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606410
Unique NamemRNA_9327
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1415
Alignment locationscaffold_35:96082..97753 -

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Properties
Property NameValue
TranscriptId606496
TrackFilteredModels2
ProteinId606410
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:96082..97753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606410gene_9327Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606410mRNA_9327-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9327CDS_9327Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9327 ID=mRNA_9327|Name=jgi.p|Nanoce1779_2|606410|organism=Nannochloropsis oceanica|type=mRNA|length=1415bp
CACTGGCGATGGGGCGTTATCTACGGCCTCGAGTGACCAAGCAAGTGATA
GAACGCTACCTCTTTTCCACCCCTTTTCCTTGTCCACGATGGCTAGACAC
TCTCACACATGTATCCCACAAAGACAGAGTGTCAAGCTAGCTACGCACGG
GTGAAGCCTTGCACATCGCAGCACCACCCCGCCAAGCCCGCTTCAATCAA
GCAATCTTTCCAGCATCCATACGATACGAGGAGATGCCCCGCTACACTCC
TTTCTCCCTCCTCCTCCTCCTCCTCTTCCTCCTGGTCCTCCCCCCCCACA
CACCCGCCTTCCTCCTCGTTAGTCGCACTACGGTACCGCGACGGCCCTGC
ACCCTCCTCCACTCCTCCCCTCCCGACAACGACACTCCCACCCCGCAAGA
CCCGCCAACCCCCCCGTCCTCCTCTACCCCTTCCCTTTCCCCCCCCCCTC
CCGCTAATGACACTCGAGAAACCCTCACGGCCCGCGAATACTTCTTTGGG
AAAGAAGGGGAATTCGACGAGGACCTTGCCTACCTTGGTATCTCCCGTCA
GAGGCTTCTACTTAATACAGCCGTGGCGACAGCGCTGGCTTTAGGGGCTA
ATTTTGTCGGCGTGACGAGCGCGTTGTTGAATACGTTTTCGACGCCGGAG
CAGATGGATGGTTGGAAAGTAGATGTCTTGTACCCAGTGAGGGGGTTCAA
GCGATACGTGGATTCGGACGATGGCTATGAATTCAGGTACCCACAATCCT
GGCTCTCGGACCAAGCCGTATTCCTCGCCGAAACCCAAGCCCGCACCGCC
TCTATCGCCCCCCTTCCCTCCTCCCCCTCCTCCTTCTCCACCTCCCTCTC
CTCCCCCCTTCCCCGTCGTCTCCCCACGTCCGTCCCCCCCTCGACTCCTC
CCTCTATCGCGCGGGGAAAAGGAGTCCGCCCCGACGCCGCCTTTGGCCCC
CCAGGGGGGAATAGAGAGGAAAACCTCTCTTTGGTCAAGAGTACAGTTAT
GCCCGGTTTCACCCTAGAGGGGACGTTGGGCGCACCAGCAGCAGCAGCTG
AACTACTGCTTTCAACAGCGATTGCTCCTCCGGGTTCGGGGAAAGTGGCG
AGGTTGGTGGACGCCAGGGAGGAAAGGAGGGGGCAAGGAGTGTTTGACGG
GAAGGTTTACGTATTTGAGTATGTGGTGGGCAGGGAGGGAGGGAGGGAGG
GGGGGGGTTTGCATAGCTTGAGTGTGATTGCGGCAAGGCCTGAAGAAAAT
AAATTGTTTACCCTGACAGTGTTGGCGCCTGAGAGGAGATGGACGGAAAG
GGAGAAGGAACTGAGGGAGGTAGCGCAGAGCTTTCGATTGTCGCGATGAT
GAAAACTAGAAATAAATATCGAATCAATGGAACAAATTAAGAAATGAAAT
GATTGTTATGCTGAC
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protein sequence of jgi.p|Nanoce1779_2|606410

>mRNA_9327-protein ID=mRNA_9327-protein|Name=jgi.p|Nanoce1779_2|606410|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MPRYTPFSLLLLLLFLLVLPPHTPAFLLVSRTTVPRRPCTLLHSSPPDND
TPTPQDPPTPPSSSTPSLSPPPPANDTRETLTAREYFFGKEGEFDEDLAY
LGISRQRLLLNTAVATALALGANFVGVTSALLNTFSTPEQMDGWKVDVLY
PVRGFKRYVDSDDGYEFRYPQSWLSDQAVFLAETQARTASIAPLPSSPSS
FSTSLSSPLPRRLPTSVPPSTPPSIARGKGVRPDAAFGPPGGNREENLSL
VKSTVMPGFTLEGTLGAPAAAAELLLSTAIAPPGSGKVARLVDAREERRG
QGVFDGKVYVFEYVVGREGGREGGGLHSLSVIAARPEENKLFTLTVLAPE
RRWTEREKELREVAQSFRLSR*
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mRNA from alignment at scaffold_35:96082..97753-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9327 ID=mRNA_9327|Name=jgi.p|Nanoce1779_2|606410|organism=Nannochloropsis oceanica|type=mRNA|length=1672bp|location=Sequence derived from alignment at scaffold_35:96082..97753- (Nannochloropsis oceanica)
CACTGGCGATGGGGCGTTATCTACGGCCTCGAGTGACCAAGCAAGTGATA
GAACGCTACCTCTTTTCCACCCCTTTTCCTTGTCCACGATGGCTAGACAC
TCTCACACATGTATCCCACAAAGACAGAGTGTCAAGCTAGCTACGCACGG
GTGAAGCCTTGCACATCGCAGCACCACCCCGCCAAGCCCGCTTCAATCAA
GCAATCTTTCCAGCATCCATACGATACGAGGAGATGCCCCGCTACACTCC
TTTCTCCCTCCTCCTCCTCCTCCTCTTCCTCCTGGTCCTCCCCCCCCACA
CACCCGCCTTCCTCCTCGTTAGTCGCACTACGGTACCGCGACGGCCCTGC
ACCCTCCTCCACTCCTCCCCTCCCGACAACGACACTCCCACCCCGCAAGA
CCCGCCAACCCCCCCGTCCTCCTCTACCCCTTCCCTTTCCCCCCCCCCTC
CCGCTAATGACACTCGAGAAACCCTCACGGCCCGCGAATACTTCTTTGGG
AAAGAAGGGGAATTCGACGAGGACCTTGCCTACCTTGGTATCTCCCGTCA
GAGGCTTCTACTTAATACAGCCGTGGCGACAGCGCTGGCTTTAGGGGCTA
ATTTTGTCGGCGTGACGAGCGCGTTGTTGAATACGTTTTCGACGCCGGAG
CAGATGGATGGTTGGAAAGTAGATGTCTTGTACCCAGTGAGGGGGTTCAA
GCGATACGTGGATTCGGACGATGGCTATGAATTCAGGTGAGGGGGCTTTC
CTTGAGTTTTTTTTTTGTCATTTATTTATATTTATTGTATTTCATGGATT
CTTATTAATTTACCTTTTCATGCACTGATGAGATCTACCCGACGTTTGTA
TGCTCTTGACCATTCTCTGAATAATCTTATTTGAGTGCAAAAGGTATTCA
CAGTCGAGCCCTCTCTATCCCTTTTTACCCATTTTATTTCCACATTCCCC
CTTTCCACACTCACACCTTTTCAAACCCGTTCCCTCGTCATAGGTACCCA
CAATCCTGGCTCTCGGACCAAGCCGTATTCCTCGCCGAAACCCAAGCCCG
CACCGCCTCTATCGCCCCCCTTCCCTCCTCCCCCTCCTCCTTCTCCACCT
CCCTCTCCTCCCCCCTTCCCCGTCGTCTCCCCACGTCCGTCCCCCCCTCG
ACTCCTCCCTCTATCGCGCGGGGAAAAGGAGTCCGCCCCGACGCCGCCTT
TGGCCCCCCAGGGGGGAATAGAGAGGAAAACCTCTCTTTGGTCAAGAGTA
CAGTTATGCCCGGTTTCACCCTAGAGGGGACGTTGGGCGCACCAGCAGCA
GCAGCTGAACTACTGCTTTCAACAGCGATTGCTCCTCCGGGTTCGGGGAA
AGTGGCGAGGTTGGTGGACGCCAGGGAGGAAAGGAGGGGGCAAGGAGTGT
TTGACGGGAAGGTTTACGTATTTGAGTATGTGGTGGGCAGGGAGGGAGGG
AGGGAGGGGGGGGGTTTGCATAGCTTGAGTGTGATTGCGGCAAGGCCTGA
AGAAAATAAATTGTTTACCCTGACAGTGTTGGCGCCTGAGAGGAGATGGA
CGGAAAGGGAGAAGGAACTGAGGGAGGTAGCGCAGAGCTTTCGATTGTCG
CGATGATGAAAACTAGAAATAAATATCGAATCAATGGAACAAATTAAGAA
ATGAAATGATTGTTATGCTGAC
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Coding sequence (CDS) from alignment at scaffold_35:96082..97753-

>mRNA_9327 ID=mRNA_9327|Name=jgi.p|Nanoce1779_2|606410|organism=Nannochloropsis oceanica|type=CDS|length=2232bp|location=Sequence derived from alignment at scaffold_35:96082..97753- (Nannochloropsis oceanica)
GTACCCACAATCCTGGCTCTCGGACCAAGCCGTATTCCTCGCCGAAACCC
AAGCCCGCACCGCCTCTATCGCCCCCCTTCCCTCCTCCCCCTCCTCCTTC
TCCACCTCCCTCTCCTCCCCCCTTCCCCGTCGTCTCCCCACGTCCGTCCC
CCCCTCGACTCCTCCCTCTATCGCGCGGGGAAAAGGAGTCCGCCCCGACG
CCGCCTTTGGCCCCCCAGGGGGGAATAGAGAGGAAAACCTCTCTTTGGTC
AAGAGTACAGTTATGCCCGGTTTCACCCTAGAGGGGACGTTGGGCGCACC
AGCAGCAGCAGCTGAACTACTGCTTTCAACAGCGATTGCTCCTCCGGGTT
CGGGGAAAGTGGCGAGGTTGGTGGACGCCAGGGAGGAAAGGAGGGGGCAA
GGAGTGTTTGACGGGAAGGTTTACGTATTTGAGTATGTGGTGGGCAGGGA
GGGAGGGAGGGAGGGGGGGGGTTTGCATAGCTTGAGTGTGATTGCGGCAA
GGCCTGAAGAAAATAAATTGTTTACCCTGACAGTGTTGGCGCCTGAGAGG
AGATGGACGGAAAGGGAGAAGGAACTGAGGGAGGTAGCGCAGAGCTTTCG
ATTGTCGCGATGAATGCCCCGCTACACTCCTTTCTCCCTCCTCCTCCTCC
TCCTCTTCCTCCTGGTCCTCCCCCCCCACACACCCGCCTTCCTCCTCGTT
AGTCGCACTACGGTACCGCGACGGCCCTGCACCCTCCTCCACTCCTCCCC
TCCCGACAACGACACTCCCACCCCGCAAGACCCGCCAACCCCCCCGTCCT
CCTCTACCCCTTCCCTTTCCCCCCCCCCTCCCGCTAATGACACTCGAGAA
ACCCTCACGGCCCGCGAATACTTCTTTGGGAAAGAAGGGGAATTCGACGA
GGACCTTGCCTACCTTGGTATCTCCCGTCAGAGGCTTCTACTTAATACAG
CCGTGGCGACAGCGCTGGCTTTAGGGGCTAATTTTGTCGGCGTGACGAGC
GCGTTGTTGAATACGTTTTCGACGCCGGAGCAGATGGATGGTTGGAAAGT
AGATGTCTTGTACCCAGTGAGGGGGTTCAAGCGATACGTGGATTCGGACG
ATGGCTATGAATTCAGGTACCCACAATCCTGGCTCTCGGACCAAGCCGTA
TTCCTCGCCGAAACCCAAGCCCGCACCGCCTCTATCGCCCCCCTTCCCTC
CTCCCCCTCCTCCTTCTCCACCTCCCTCTCCTCCCCCCTTCCCCGTCGTC
TCCCCACGTCCGTCCCCCCCTCGACTCCTCCCTCTATCGCGCGGGGAAAA
GGAGTCCGCCCCGACGCCGCCTTTGGCCCCCCAGGGGGGAATAGAGAGGA
AAACCTCTCTTTGGTCAAGAGTACAGTTATGCCCGGTTTCACCCTAGAGG
GGACGTTGGGCGCACCAGCAGCAGCAGCTGAACTACTGCTTTCAACAGCG
ATTGCTCCTCCGGGTTCGGGGAAAGTGGCGAGGTTGGTGGACGCCAGGGA
GGAAAGGAGGGGGCAAGGAGTGTTTGACGGGAAGGTTTACGTATTTGAGT
ATGTGGTGGGCAGGGAGGGAGGGAGGGAGGGGGGGGGTTTGCATAGCTTG
AGTGTGATTGCGGCAAGGCCTGAAGAAAATAAATTGTTTACCCTGACAGT
GTTGGCGCCTGAGAGGAGATGGACGGAAAGGGAGAAGGAACTGAGGGAGG
TAGCGCAGAGCTTTCGATTGTCGCGATGAATGCCCCGCTACACTCCTTTC
TCCCTCCTCCTCCTCCTCCTCTTCCTCCTGGTCCTCCCCCCCCACACACC
CGCCTTCCTCCTCGTTAGTCGCACTACGGTACCGCGACGGCCCTGCACCC
TCCTCCACTCCTCCCCTCCCGACAACGACACTCCCACCCCGCAAGACCCG
CCAACCCCCCCGTCCTCCTCTACCCCTTCCCTTTCCCCCCCCCCTCCCGC
TAATGACACTCGAGAAACCCTCACGGCCCGCGAATACTTCTTTGGGAAAG
AAGGGGAATTCGACGAGGACCTTGCCTACCTTGGTATCTCCCGTCAGAGG
CTTCTACTTAATACAGCCGTGGCGACAGCGCTGGCTTTAGGGGCTAATTT
TGTCGGCGTGACGAGCGCGTTGTTGAATACGTTTTCGACGCCGGAGCAGA
TGGATGGTTGGAAAGTAGATGTCTTGTACCCAGTGAGGGGGTTCAAGCGA
TACGTGGATTCGGACGATGGCTATGAATTCAG
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Synonyms
Publications