jgi.p|Nanoce1779_2|270595, mRNA_9323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|270595
Unique NamemRNA_9323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_35:79509..80563 +

Link to JBrowse

Properties
Property NameValue
TranscriptId270681
TrackFilteredModels2
ProteinId270595
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:79509..80563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|270595gene_9323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|270595mRNA_9323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9323CDS_9323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9323 ID=mRNA_9323|Name=jgi.p|Nanoce1779_2|270595|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
AGGGGGAGGAGGTTAATAATTAAGAAGTGGGTTTCAGGACAAGACAAGAC
GCCGCCGGGTGAAAAGGACTGCCGCAGGGATGAGAGCGATAGAACGACAT
ATTTCATTCGCTTTCATTGCAGACCAACTACGATGCATGTAGGTGGATAT
GGAAGTCGGAGTGCGTTCAGAGTGCCTTTGCTCTCGGGCAGCGCTGGAGA
AGCCGCGACGTGCCGTTCCTTCCTCGTTTCCTCGCTTCCTTCTCACCCCA
CACAACCACCCATATGCTCACACAGAGACAGATCTCGATGAGTCAAGGCA
ACAAGAAACGTCCTCGTCCTCATCCTCGTACTCCTCCAGCCATTCTTTCC
CTCCAATCCCCCCTCCCCTCTTCAGTCTCCTTCTACAACACCTATGTCAA
GCGCCACCGTCCATGCCTACTAAAACAGGCCGGACCCTCCCTTGTCCCCA
AGGCAATGACCTTGTTAGGCATCAAAGACGGTGAGGCGGAGGGAGTAGTG
GAGCGACTGACCGCGATTCTTGGGCCTGAGCGTGGTAAGAACTACACCTG
GGGTTGTACCCCCCTCTTTCAACCCCTCCTGGTTTCCTCCCTCCCTCCTC
TATGGACCAACCTTCTTCCATCTTCATCCGATACTGATACCCCGCATTCT
GAACCCATCGTATATCTTTCTTCCCTTGCTTTCCTCCAGTCCTCCACGTC
TCGTGCGTTGCCGAAGGAGAGGCTTTCTCAGGCGCCACCCACAAGGCGCA
GAGCGTTCCCCTCTCCCTTCCCTCCCTCCTCCGCTTCTTCCTCGTCGCCG
CCCGTGAGACAAAGGAAATACCAAAAAAAAGGCAATGAAACAGAGGAAGA
CGAGGGTGGGGGGGGTCGATGGACTGGATTTTTACCTGGCCCAGGCCCCG
GTTTATGAGCGAGAAAAGGTTGAAAAGAGGAAGACGGAGAATGGAGGGGG
AGGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGGGGAGGAATTAGACGAA
GAAGAAGAAGAGAACAAAGCTTACCGCTCGCGCCACTCTGGGAGCACATC
GATGC
back to top

protein sequence of jgi.p|Nanoce1779_2|270595

>mRNA_9323-protein ID=mRNA_9323-protein|Name=jgi.p|Nanoce1779_2|270595|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MLTQRQISMSQGNKKRPRPHPRTPPAILSLQSPLPSSVSFYNTYVKRHRP
CLLKQAGPSLVPKAMTLLGIKDGEAEGVVERLTAILGPERGKNYTWGCTP
LFQPLLVSSLPPLWTNLLPSSSDTDTPHSEPIVYLSSLAFLQSSTSRALP
KERLSQAPPTRRRAFPSPFPPSSASSSSPPVRQRKYQKKGNETEEDEGGG
GRWTGFLPGPGPGL*
back to top

mRNA from alignment at scaffold_35:79509..80563+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9323 ID=mRNA_9323|Name=jgi.p|Nanoce1779_2|270595|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp|location=Sequence derived from alignment at scaffold_35:79509..80563+ (Nannochloropsis oceanica)
AGGGGGAGGAGGTTAATAATTAAGAAGTGGGTTTCAGGACAAGACAAGAC
GCCGCCGGGTGAAAAGGACTGCCGCAGGGATGAGAGCGATAGAACGACAT
ATTTCATTCGCTTTCATTGCAGACCAACTACGATGCATGTAGGTGGATAT
GGAAGTCGGAGTGCGTTCAGAGTGCCTTTGCTCTCGGGCAGCGCTGGAGA
AGCCGCGACGTGCCGTTCCTTCCTCGTTTCCTCGCTTCCTTCTCACCCCA
CACAACCACCCATATGCTCACACAGAGACAGATCTCGATGAGTCAAGGCA
ACAAGAAACGTCCTCGTCCTCATCCTCGTACTCCTCCAGCCATTCTTTCC
CTCCAATCCCCCCTCCCCTCTTCAGTCTCCTTCTACAACACCTATGTCAA
GCGCCACCGTCCATGCCTACTAAAACAGGCCGGACCCTCCCTTGTCCCCA
AGGCAATGACCTTGTTAGGCATCAAAGACGGTGAGGCGGAGGGAGTAGTG
GAGCGACTGACCGCGATTCTTGGGCCTGAGCGTGGTAAGAACTACACCTG
GGGTTGTACCCCCCTCTTTCAACCCCTCCTGGTTTCCTCCCTCCCTCCTC
TATGGACCAACCTTCTTCCATCTTCATCCGATACTGATACCCCGCATTCT
GAACCCATCGTATATCTTTCTTCCCTTGCTTTCCTCCAGTCCTCCACGTC
TCGTGCGTTGCCGAAGGAGAGGCTTTCTCAGGCGCCACCCACAAGGCGCA
GAGCGTTCCCCTCTCCCTTCCCTCCCTCCTCCGCTTCTTCCTCGTCGCCG
CCCGTGAGACAAAGGAAATACCAAAAAAAAGGCAATGAAACAGAGGAAGA
CGAGGGTGGGGGGGGTCGATGGACTGGATTTTTACCTGGCCCAGGCCCCG
GTTTATGAGCGAGAAAAGGTTGAAAAGAGGAAGACGGAGAATGGAGGGGG
AGGAGGAAGCGGAGGAGGAAGAGGAGGAGGAAGGGGAGGAATTAGACGAA
GAAGAAGAAGAGAACAAAGCTTACCGCTCGCGCCACTCTGGGAGCACATC
GATGC
back to top

Coding sequence (CDS) from alignment at scaffold_35:79509..80563+

>mRNA_9323 ID=mRNA_9323|Name=jgi.p|Nanoce1779_2|270595|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_35:79509..80563+ (Nannochloropsis oceanica)
ATGCTCACACAGAGACAGATCTCGATGAGTCAAGGCAACAAGAAACGTCC
TCGTCCTCATCCTCGTACTCCTCCAGCCATTCTTTCCCTCCAATCCCCCC
TCCCCTCTTCAGTCTCCTTCTACAACACCTATGTCAAGCGCCACCGTCCA
TGCCTACTAAAACAGGCCGGACCCTCCCTTGTCCCCAAGGCAATGACCTT
GTTAGGCATCAAAGACGGTGAGGCGGAGGGAGTAGTGGAGCGACTGACCG
CGATTCTTGGGCCTGAGCGTGGTAAGAACTACACCTGGGGTTGTACCCCC
CTCTTTCAACCCCTCCTGGTTTCCTCCCTCCCTCCTCTATGGACCAACCT
TCTTCCATCTTCATCCGATACTGATACCCCGCATTCTGAACCCATCGTAT
ATCTTTCTTCCCTTGCTTTCCTCCAGTCCTCCACGTCTCGTGCGTTGCCG
AAGGAGAGGCTTTCTCAGGCGCCACCCACAAGGCGCAGAGCGTTCCCCTC
TCCCTTCCCTCCCTCCTCCGCTTCTTCCTCGTCGCCGCCCGTGAGACAAA
GGAAATACCAAAAAAAAGGCAATGAAACAGAGGAAGACGAGGGTGGGGGG
GGTCGATGGACTGGATTTTTACCTGGCCCAGGCCCCGGTTTATGA
back to top
Synonyms
Publications