|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 606463 |
| Track | FilteredModels2 |
| ProteinId | 606377 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_35 | supercontig | scaffold_35:72064..74461 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9321 ID=mRNA_9321|Name=jgi.p|Nanoce1779_2|606377|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
CCCTTGACGTCACTTCATTCAGCGACGAGAGGGCCGCACCCCCCTGTTCG
ATTCATTTTCTTGCTTCATCAGCACGGACCACTTGCACCAAACATACACA
CATGCGAGCGAAGGGCACCATTTCAATTATGTGAGGCGGTGCACCTCATC
CATCCCCCCCCCGACCGCGCGTGTTAATAATCGCTCCCGTCCCCGCCTTT
GACCTGCTTCACACGTATGAGAGTGTGAATATGAAGAGAAGGCAACGGAT
GAGTCTCGTCAAAGCATCCAGCTACCAATTGCCCACGGCCCACCGACATG
CGGGTTACAGTGCTGTCGCTTTGACGCGACTCCTCAGTCGCCTCCTTCTT
CATCTTCACACCCTTCAACGCCCATCTGTTATTTAGTAAGGGTCACATCC
TCACACACTTCACCGCCCATCTCTTATGAAAAGGTCTTTTTATATCGCAC
ACCAACCGTCTTCACGGAATGCAACACATCACTTTTACTCGACTTTTGGC
TCCCCCTGACACTTGAATACAGGCTCACGCCACCATTCCTCCATCAAAAG
CCTGCATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTC
CTCTTCTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCA
GCCCTATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCG
CCTATGGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCACG
TGTCAACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCG
TGCCCGCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCA
TCGTAGTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTGAC
ATTGCTGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGA
GCTGGGACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCG
TTTTGGGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGA
GAGTATACCGTGTTGGTGACCGGCCATTCCTTGGGAGGCGCAGCTGCCAC
CCTGTGTGCAGCTGACCTGGGGAAACGTTTCGGGCTTTCGACCCTCCTTT
ATACATTTGGTGAGCCCCGGGTGGGCGATGCTGATTTTGCGTCTTCATTG
GCCTCACATTCGTTGGGGAGTTACCGGGTCGTCCACGCGTCGGATTGTGT
CCCGCATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAGAGCAATGTCACC
CTAAGCCAGATTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAAC
AGTATGGGGGAAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGATGA
AGACGCCTGCACCAATGGCTCCGTGACAAGCGTGTCAGACCACAAGTACT
ATTTCGGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCCCGCTTCCGCCA
GATTTCTATAGCACCAGCAGTACTAGCAGTGGCAGTGACAGCAGCAGTAG
AAGCGTCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGCGGCGGTGTCGA
TGCGCGTGGCAATGAAGCAATAGGAGTGGTGATTTAAAAAAAGATCATCG
ATGGATTGAATGCATACATATGGAAAACTTGTAAAACAAATGTAAGATAA
ATATGCCTGAAGCTCCTGGTGGGGTCAGGCCTTCGCTTTTTGAGCGAAAC
TCGTTTGAGTGTTGTTTTTGATTGTGCTTCATTGATGAAGACTTTCAGCG
TCTCAACGGAAAAATCCTCTCCGTGTCATCCTCAAGGGATTTGGCAAAAG
GTGTCATGAGATAAAACCTTGACGGGTGATGCTTTTTCGAGACCTTGCCG
TTGCAGACCAACAACAACAACAACAACAACAA back to topprotein sequence of jgi.p|Nanoce1779_2|606377 >mRNA_9321-protein ID=mRNA_9321-protein|Name=jgi.p|Nanoce1779_2|606377|organism=Nannochloropsis oceanica|type=polypeptide|length=356bp
MHQLLPIRSQHRHLLLFFLLSLFSFSVALPLQPYSDTLARKAALFSSLAY
GEPACIAANSIYNSTCQLPEFTILHTYLSPPRARDAFAYIGMDVKEKLIV
VAFKGSNDTEDYIIDIAGPVRYRFPCSIGGVELGQTHHGFCAYYRSLAVL
GLAWEVTRMWEEKKGEYTVLVTGHSLGGAAATLCAADLGKRFGLSTLLYT
FGEPRVGDADFASSLASHSLGSYRVVHASDCVPHLPPCCGGLRKEQCHPK
PDCPFHHGQEVWYDNSMGEGAPFVMCPGDEDEDACTNGSVTSVSDHKYYF
GERLGTWCCFPPLPPDFYSTSSTSSGSDSSSRSVSLNGLEMEEKAAVSMR
VAMKQ* back to topmRNA from alignment at scaffold_35:72064..74461- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9321 ID=mRNA_9321|Name=jgi.p|Nanoce1779_2|606377|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp|location=Sequence derived from alignment at scaffold_35:72064..74461- (Nannochloropsis oceanica)
CCCTTGACGTCACTTCATTCAGCGACGAGAGGGCCGCACCCCCCTGTTCG
ATTCATTTTCTTGCTTCATCAGCACGGACCACTTGCACCAAACATACACA
CATGCGAGCGAAGGGCACCATTTCAATTATGTGAGGCGGTGCACCTCATC
CATCCCCCCCCCGACCGCGCGTGTTAATAATCGCTCCCGTCCCCGCCTTT
GACCTGCTTCACACGTATGAGAGTGTGAATATGAAGAGAAGGCAACGGAT
GAGTCTCGTCAAAGCATCCAGCTACCAATTGCCCACGGCCCACCGACATG
CGGGTTACAGTGCTGTCGCTTTGACGCGACTCCTCAGTCGCCTCCTTCTT
CATCTTCACACCCTTCAACGCCCATCTGTTATTTAGTAAGGGTCACATCC
TCACACACTTCACCGCCCATCTCTTATGAAAAGGTCTTTTTATATCGCAC
ACCAACCGTCTTCACGGAATGCAACACATCACTTTTACTCGACTTTTGGC
TCCCCCTGACACTTGAATACAGGCTCACGCCACCATTCCTCCATCAAAAG
CCTGCATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTC
CTCTTCTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCA
GCCCTATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCG
CCTATGGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCACG
TGTCAACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCG
TGCCCGCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCA
TCGTAGTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTGAC
ATTGCTGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGA
GCTGGGACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCG
TTTTGGGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGA
GAGTATACCGTGTTGGTGACCGGCCATTCCTTGGGTGAGTGCAAGGAAGG
GAGGGCGTATAAATGGCATCTGTTGCTGGTCATGCTGGGCCGTTGCGAGA
GCCATGTCTGCCGTGTAGTAGGACGTCGCTGTAACTTCACTCTCCCTCCT
TCCCTCCCTCCCTCTGTCCCTGCCTCCGTCCTTCCCTACCTACTACCTCA
GGAGGCGCAGCTGCCACCCTGTGTGCAGCTGACCTGGGGAAACGTTTCGG
GCTTTCGACCCTCCTTTATACATTTGGTGAGCCCCGGGTGGGCGATGCTG
ATTTTGCGTCTTCATTGGCCTCACATTCGTTGGGGAGTTACCGGGTCGTC
CACGCGTCGGATTGTGTCCCGCATTTGCCGCCTTGCTGTGGTGGGCTTCG
GAAAGGTGAGAGAGGGAGGGAGGGAGGGGAAAAGGGGTTGCCGCGTGAGC
ACTCGAGCAAGATGCCGACGTTGAGGGCTTCCGAATCTCATTCTCAACTT
CCCTCCCTACCCTACTCTCTTCCCTTAAGAGCAATGTCACCCTAAGCCAG
ATTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACAGTATGGGG
GAAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGTATGCAGGGAGGG
AGAGAGGGAGGGAGGGAGGGGAGGGGAAGGGAAGCTACGGGTGCTTTCCT
GAGCAAGCGGTACGAGGAAAATGAGACGCCGCTTTTTTCAACATGGTAAC
AATCCCCATCTTTCTTCCTCCCTTTCTCCTTTCTTACTTCCTCCTTCCAC
CATTTATATAGGATGAAGACGCCTGCACCAATGGCTCCGTGACAAGCGTG
TCAGACCACAAGTACTATTTCGGCGAGCGCCTGGGGACGTGGTGTTGCTT
TCCCCCGCTTCCGCCAGATTTCTATAGCACCAGCAGTACTAGCAGTGGCA
GTGACAGCAGCAGTAGAAGCGTCTCTTTAAACGGGTTGGAGATGGAGGAG
AAGGCGGCGGTGTCGATGCGCGTGGCAATGAAGCAATAGGAGTGGTGATT
TAAAAAAAGATCATCGATGGATTGAATGCATACATATGGAAAACTTGTAA
AACAAATGTAAGATAAATATGCCTGAAGCTCCTGGTGGGGTCAGGCCTTC
GCTTTTTGAGCGAAACTCGTTTGAGTGTTGTTTTTGATTGTGCTTCATTG
ATGAAGACTTTCAGCGTCTCAACGGAAAAATCCTCTCCGTGTCATCCTCA
AGGGATTTGGCAAAAGGTGTCATGAGATAAAACCTTGACGGGTGATGCTT
TTTCGAGACCTTGCCGTTGCAGACCAACAACAACAACAACAACAACAA back to topCoding sequence (CDS) from alignment at scaffold_35:72064..74461- >mRNA_9321 ID=mRNA_9321|Name=jgi.p|Nanoce1779_2|606377|organism=Nannochloropsis oceanica|type=CDS|length=4272bp|location=Sequence derived from alignment at scaffold_35:72064..74461- (Nannochloropsis oceanica)
GATGAAGACGCCTGCACCAATGGCTCCGTGACAAGCGTGTCAGACCACAA
GTACTATTTCGGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCCCGCTTC
CGCCAGATTTCTATAGCACCAGCAGTACTAGCAGTGGCAGTGACAGCAGC
AGTAGAAGCGTCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGCGGCGGT
GTCGATGCGCGTGGCAATGAAGCAATAGAGCAATGTCACCCTAAGCCAGA
TTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACAGTATGGGGG
AAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGAGGCGCAGCTGCCA
CCCTGTGTGCAGCTGACCTGGGGAAACGTTTCGGGCTTTCGACCCTCCTT
TATACATTTGGTGAGCCCCGGGTGGGCGATGCTGATTTTGCGTCTTCATT
GGCCTCACATTCGTTGGGGAGTTACCGGGTCGTCCACGCGTCGGATTGTG
TCCCGCATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAGATGCATCAACT
TCTACCGATACGTAGCCAGCACCGTCACCTCCTCCTCTTCTTCCTCCTTT
CCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCAGCCCTATTCTGACACC
CTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCGCCTATGGAGAACCTGC
CTGTATCGCCGCCAACAGCATATACAACAGCACGTGTCAACTCCCTGAGT
TCACCATTCTCCACACCTATCTCTCCCCGCCCCGTGCCCGCGACGCCTTC
GCGTACATAGGGATGGACGTAAAAGAGAAGCTCATCGTAGTGGCGTTCAA
GGGGAGCAACGACACGGAGGACTACATCATTGACATTGCTGGGCCGGTCC
GATATCGTTTCCCTTGCTCGATTGGGGGCGTGGAGCTGGGACAGACCCAC
CACGGATTTTGTGCGTACTATCGCTCCTTGGCCGTTTTGGGCTTAGCGTG
GGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGAGAGTATACCGTGTTGG
TGACCGGCCATTCCTTGGGATGAAGACGCCTGCACCAATGGCTCCGTGAC
AAGCGTGTCAGACCACAAGTACTATTTCGGCGAGCGCCTGGGGACGTGGT
GTTGCTTTCCCCCGCTTCCGCCAGATTTCTATAGCACCAGCAGTACTAGC
AGTGGCAGTGACAGCAGCAGTAGAAGCGTCTCTTTAAACGGGTTGGAGAT
GGAGGAGAAGGCGGCGGTGTCGATGCGCGTGGCAATGAAGCAATAGAGCA
ATGTCACCCTAAGCCAGATTGTCCTTTTCACCACGGGCAGGAAGTGTGGT
ATGACAACAGTATGGGGGAAGGGGCTCCTTTCGTGATGTGTCCGGGGGAT
GAGGAGGCGCAGCTGCCACCCTGTGTGCAGCTGACCTGGGGAAACGTTTC
GGGCTTTCGACCCTCCTTTATACATTTGGTGAGCCCCGGGTGGGCGATGC
TGATTTTGCGTCTTCATTGGCCTCACATTCGTTGGGGAGTTACCGGGTCG
TCCACGCGTCGGATTGTGTCCCGCATTTGCCGCCTTGCTGTGGTGGGCTT
CGGAAAGATGCATCAACTTCTACCGATACGTAGCCAGCACCGTCACCTCC
TCCTCTTCTTCCTCCTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTT
CAGCCCTATTCTGACACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCT
CGCCTATGGAGAACCTGCCTGTATCGCCGCCAACAGCATATACAACAGCA
CGTGTCAACTCCCTGAGTTCACCATTCTCCACACCTATCTCTCCCCGCCC
CGTGCCCGCGACGCCTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCT
CATCGTAGTGGCGTTCAAGGGGAGCAACGACACGGAGGACTACATCATTG
ACATTGCTGGGCCGGTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTG
GAGCTGGGACAGACCCACCACGGATTTTGTGCGTACTATCGCTCCTTGGC
CGTTTTGGGCTTAGCGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAG
GAGAGTATACCGTGTTGGTGACCGGCCATTCCTTGGGATGAAGACGCCTG
CACCAATGGCTCCGTGACAAGCGTGTCAGACCACAAGTACTATTTCGGCG
AGCGCCTGGGGACGTGGTGTTGCTTTCCCCCGCTTCCGCCAGATTTCTAT
AGCACCAGCAGTACTAGCAGTGGCAGTGACAGCAGCAGTAGAAGCGTCTC
TTTAAACGGGTTGGAGATGGAGGAGAAGGCGGCGGTGTCGATGCGCGTGG
CAATGAAGCAATAGAGCAATGTCACCCTAAGCCAGATTGTCCTTTTCACC
ACGGGCAGGAAGTGTGGTATGACAACAGTATGGGGGAAGGGGCTCCTTTC
GTGATGTGTCCGGGGGATGAGGAGGCGCAGCTGCCACCCTGTGTGCAGCT
GACCTGGGGAAACGTTTCGGGCTTTCGACCCTCCTTTATACATTTGGTGA
GCCCCGGGTGGGCGATGCTGATTTTGCGTCTTCATTGGCCTCACATTCGT
TGGGGAGTTACCGGGTCGTCCACGCGTCGGATTGTGTCCCGCATTTGCCG
CCTTGCTGTGGTGGGCTTCGGAAAGATGCATCAACTTCTACCGATACGTA
GCCAGCACCGTCACCTCCTCCTCTTCTTCCTCCTTTCCCTCTTCTCCTTC
TCAGTTGCCCTCCCCCTTCAGCCCTATTCTGACACCCTTGCCCGGAAGGC
CGCCCTTTTCTCTTCTCTCGCCTATGGAGAACCTGCCTGTATCGCCGCCA
ACAGCATATACAACAGCACGTGTCAACTCCCTGAGTTCACCATTCTCCAC
ACCTATCTCTCCCCGCCCCGTGCCCGCGACGCCTTCGCGTACATAGGGAT
GGACGTAAAAGAGAAGCTCATCGTAGTGGCGTTCAAGGGGAGCAACGACA
CGGAGGACTACATCATTGACATTGCTGGGCCGGTCCGATATCGTTTCCCT
TGCTCGATTGGGGGCGTGGAGCTGGGACAGACCCACCACGGATTTTGTGC
GTACTATCGCTCCTTGGCCGTTTTGGGCTTAGCGTGGGAGGTGACAAGGA
TGTGGGAGGAGAAGAAAGGAGAGTATACCGTGTTGGTGACCGGCCATTCC
TTGGGATGAAGACGCCTGCACCAATGGCTCCGTGACAAGCGTGTCAGACC
ACAAGTACTATTTCGGCGAGCGCCTGGGGACGTGGTGTTGCTTTCCCCCG
CTTCCGCCAGATTTCTATAGCACCAGCAGTACTAGCAGTGGCAGTGACAG
CAGCAGTAGAAGCGTCTCTTTAAACGGGTTGGAGATGGAGGAGAAGGCGG
CGGTGTCGATGCGCGTGGCAATGAAGCAATAGAGCAATGTCACCCTAAGC
CAGATTGTCCTTTTCACCACGGGCAGGAAGTGTGGTATGACAACAGTATG
GGGGAAGGGGCTCCTTTCGTGATGTGTCCGGGGGATGAGGAGGCGCAGCT
GCCACCCTGTGTGCAGCTGACCTGGGGAAACGTTTCGGGCTTTCGACCCT
CCTTTATACATTTGGTGAGCCCCGGGTGGGCGATGCTGATTTTGCGTCTT
CATTGGCCTCACATTCGTTGGGGAGTTACCGGGTCGTCCACGCGTCGGAT
TGTGTCCCGCATTTGCCGCCTTGCTGTGGTGGGCTTCGGAAAGATGCATC
AACTTCTACCGATACGTAGCCAGCACCGTCACCTCCTCCTCTTCTTCCTC
CTTTCCCTCTTCTCCTTCTCAGTTGCCCTCCCCCTTCAGCCCTATTCTGA
CACCCTTGCCCGGAAGGCCGCCCTTTTCTCTTCTCTCGCCTATGGAGAAC
CTGCCTGTATCGCCGCCAACAGCATATACAACAGCACGTGTCAACTCCCT
GAGTTCACCATTCTCCACACCTATCTCTCCCCGCCCCGTGCCCGCGACGC
CTTCGCGTACATAGGGATGGACGTAAAAGAGAAGCTCATCGTAGTGGCGT
TCAAGGGGAGCAACGACACGGAGGACTACATCATTGACATTGCTGGGCCG
GTCCGATATCGTTTCCCTTGCTCGATTGGGGGCGTGGAGCTGGGACAGAC
CCACCACGGATTTTGTGCGTACTATCGCTCCTTGGCCGTTTTGGGCTTAG
CGTGGGAGGTGACAAGGATGTGGGAGGAGAAGAAAGGAGAGTATACCGTG
TTGGTGACCGGCCATTCCTTGG back to top
|