jgi.p|Nanoce1779_2|633453, mRNA_9320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633453
Unique NamemRNA_9320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1628
Alignment locationscaffold_35:69839..71764 +

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Properties
Property NameValue
TranscriptId633539
TrackFilteredModels2
ProteinId633453
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:69839..71764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633453gene_9320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633453mRNA_9320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9320CDS_9320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9320 ID=mRNA_9320|Name=jgi.p|Nanoce1779_2|633453|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp
GTGGATGATGATGGAAGAGCAGAGCGACGCGAGGGCTGAGGCAGCAAGGA
AATGTATTTGGGAAGTAGCGGCCAGAGGGTGCTTCCTTATGCTTGTGCGG
GAAGGATTCGTGTGAATTACTAGGGCCTCCGAGCAATGAATTGCCTCCCT
CCTCCCACCTTTTTGGGGTGGTGTTGACCTTTCCGGACCCCTTGCTTCTT
TCCTTCCGTTCCTTCCACTTGCTTCAAGCTTCGTCGTCGACGGTCGCCCT
CGGCATTTCGTCGAGTCAGAGCCTCACACCGTCTGAGTAACATTTCACTC
ACGACAACTCGACTCGTGCGTCGAGTCTTTGTAATCCTGCACATGTCGCC
GTATAAAAGACGTGTCACACGACGGGGCTCCGTGTGTGGACAGTACAGGA
AGAAGAACTCCTGGATTAATAATGTCCGGGGGAAAAGCATGAAGCGGGAG
AATAGACGGTACCATAGCACCACTTAATTGTGCGCGCATCCTTGCCGCAC
CAATATGTCTCTTTGTGTCTCTTTTCACTCTCTTGGTCAGTGGTATGTCT
CTCATTTCGATGCACGAATGATGGGGTCGTCGGCGTGCCGTACGATGATA
CACACAGACACATTTTCCTTTTTCACTTACTTGCGCATCCTGGCCTACCA
CCCCCACATTTCACCTTTCTACCGGTTATTTTTCCGTATCACAGGACCGG
GCCAATCACTTTATTATTCCAAAAAAAGTTCGAGGCAGGCATGGCCAGTA
GTGCTTCCCCCTCCTCGGTGGGAGACGAGACCCTGCCCCATGGCCACAGC
GGCGTCGAACAAATTCAGACAAAAAATAATACGGGCTTCGATATGGGGAA
ACCATCGTATCACGCGGACACTTGGTGGAAGGCATATGATCCGGTTCATC
CAGAGTTGCCCATTGTCGACATCGGTAGCGGTTTAGGTTCCAACGTCCTG
GCTGCTCTCAAAACAGGTGCGCGTGTCATCGCCATTGACATGAGCGACGA
GCACCTCGAAGAGATCCGCAGCAAGGCCGCCAAAGAGCACAACGGGGCTC
AAGGCGCGAACGAGGGTGACAAAATGGCAGAACGCTTGGAAACCCGCTGG
GGACAATTGCCCGACAAGGTTCCTTTGGAGGCAGAGTCGGTGAGTGGCAT
CATGTGTGCACAAGTCCTCCATTTCCTGAATCCGGATGACGTGGTGACAT
CATTCCGGAACTTCGCGCACTGGCTGGCCCCGGGGGGGGTTCTTGTGGTG
TTGGTGTGTTCGCACTACCAAAAGCTGTGCTACGGTATCCCGGGGAAGGT
GGCAGCAATAGATGCAGCAACGGAAAAAGATCCTGAAGGATTTCATGGTT
TTACCCCCGCGGGAAAATCCAGTCAAGAGATGTTTGATGCCATGTTAGAA
TCCGTCCCTGCAGAGGTGCGAGCAGCCGTCCCGGGCAGGAGCCAGCAATT
TCAAACCTTTGCCCCTCCGCAGCTACGGGCTGTTGCAATAAAATGTGGAT
TGGAAGTGGACTTGGTCGAGTTTGCGGATGGACGTTTGAGTAATTACCCT
GTATTTTTGTATGGGGAAAAGGAGGAGGAGCGCGGACGAGAGCAGGTAGT
CTTGGTGGCGCGGAAACCGAAGATGTGA
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protein sequence of jgi.p|Nanoce1779_2|633453

>mRNA_9320-protein ID=mRNA_9320-protein|Name=jgi.p|Nanoce1779_2|633453|organism=Nannochloropsis oceanica|type=polypeptide|length=296bp
MASSASPSSVGDETLPHGHSGVEQIQTKNNTGFDMGKPSYHADTWWKAYD
PVHPELPIVDIGSGLGSNVLAALKTGARVIAIDMSDEHLEEIRSKAAKEH
NGAQGANEGDKMAERLETRWGQLPDKVPLEAESVSGIMCAQVLHFLNPDD
VVTSFRNFAHWLAPGGVLVVLVCSHYQKLCYGIPGKVAAIDAATEKDPEG
FHGFTPAGKSSQEMFDAMLESVPAEVRAAVPGRSQQFQTFAPPQLRAVAI
KCGLEVDLVEFADGRLSNYPVFLYGEKEEERGREQVVLVARKPKM*
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mRNA from alignment at scaffold_35:69839..71764+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9320 ID=mRNA_9320|Name=jgi.p|Nanoce1779_2|633453|organism=Nannochloropsis oceanica|type=mRNA|length=1926bp|location=Sequence derived from alignment at scaffold_35:69839..71764+ (Nannochloropsis oceanica)
GTGGATGATGATGGAAGAGCAGAGCGACGCGAGGGCTGAGGCAGCAAGGA
AATGTATTTGGGAAGTAGCGGCCAGAGGGTGCTTCCTTATGCTTGTGCGG
GAAGGATTCGTGTGAATTACTAGGGCCTCCGAGCAATGAATTGCCTCCCT
CCTCCCACCTTTTTGGGGTGGTGTTGACCTTTCCGGACCCCTTGCTTCTT
TCCTTCCGTTCCTTCCACTTGCTTCAAGCTTCGTCGTCGACGGTCGCCCT
CGGCATTTCGTCGAGTCAGAGCCTCACACCGTCTGAGTAACATTTCACTC
ACGACAACTCGACTCGTGCGTCGAGTCTTTGTAATCCTGCACATGTCGCC
GTATAAAAGACGTGTCACACGACGGGGCTCCGTGTGTGGACAGTACAGGA
AGAAGAACTCCTGGATTAATAATGTCCGGGGGAAAAGCATGAAGCGGGAG
AATAGACGGTACCATAGCACCACTTAATTGTGCGCGCATCCTTGCCGCAC
CAATATGTCTCTTTGTGTCTCTTTTCACTCTCTTGGTCAGTGGTATGTCT
CTCATTTCGATGCACGAATGATGGGGTCGTCGGCGTGCCGTACGATGATA
CACACAGACACATTTTCCTTTTTCACTTACTTGCGCATCCTGGCCTACCA
CCCCCACATTTCACCTTTCTACCGGTTATTTTTCCGTATCACAGGACCGG
GCCAATCACTTTATTATTCCAAAAAAAGTTCGAGGCAGGCATGGCCAGTA
GTGCTTCCCCCTCCTCGGTGGGAGACGAGACCCTGCCCCATGGCCACAGC
GGCGTCGAACAAATTCAGACAAAAAATAATACGGGCTTCGATATGGGGAA
ACCATCGTATCACGCGGACACTTGGTGGAAGGCATATGATCCGGTTCATC
CAGAGGTAGGCAGGGAGCAGGGAGGCAGGGGATGGAAGAAGTGGATTGCC
CCCCATACGTCGCTATTCCACTGTGCGTGAGGTTGACTGGGCTCATCGTG
TGGAAGGGATGGAATGACGGAGACACGGAGACCGAGGAAGGCGTATTTGG
CCTAGACAAGGTGTGTGTTGCGCCTGTCTTGTAATAGTGGTGCTCGATGC
ATCATGCTGACTTCGAATTCGATAATAGTTTTACTTCTGGAAGGATCCTC
ATCGTCCTTCCTCTGCTCTCTTCCTCCCTTCCTACTCCCCTCGTACTTCT
TAGTTGCCCATTGTCGACATCGGTAGCGGTTTAGGTTCCAACGTCCTGGC
TGCTCTCAAAACAGGTGCGCGTGTCATCGCCATTGACATGAGCGACGAGC
ACCTCGAAGAGATCCGCAGCAAGGCCGCCAAAGAGCACAACGGGGCTCAA
GGCGCGAACGAGGGTGACAAAATGGCAGAACGCTTGGAAACCCGCTGGGG
ACAATTGCCCGACAAGGTTCCTTTGGAGGCAGAGTCGGTGAGTGGCATCA
TGTGTGCACAAGTCCTCCATTTCCTGAATCCGGATGACGTGGTGACATCA
TTCCGGAACTTCGCGCACTGGCTGGCCCCGGGGGGGGTTCTTGTGGTGTT
GGTGTGTTCGCACTACCAAAAGCTGTGCTACGGTATCCCGGGGAAGGTGG
CAGCAATAGATGCAGCAACGGAAAAAGATCCTGAAGGATTTCATGGTTTT
ACCCCCGCGGGAAAATCCAGTCAAGAGATGTTTGATGCCATGTTAGAATC
CGTCCCTGCAGAGGTGCGAGCAGCCGTCCCGGGCAGGAGCCAGCAATTTC
AAACCTTTGCCCCTCCGCAGCTACGGGCTGTTGCAATAAAATGTGGATTG
GAAGTGGACTTGGTCGAGTTTGCGGATGGACGTTTGAGTAATTACCCTGT
ATTTTTGTATGGGGAAAAGGAGGAGGAGCGCGGACGAGAGCAGGTAGTCT
TGGTGGCGCGGAAACCGAAGATGTGA
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Coding sequence (CDS) from alignment at scaffold_35:69839..71764+

>mRNA_9320 ID=mRNA_9320|Name=jgi.p|Nanoce1779_2|633453|organism=Nannochloropsis oceanica|type=CDS|length=1776bp|location=Sequence derived from alignment at scaffold_35:69839..71764+ (Nannochloropsis oceanica)
ATGGCCAGTAGTGCTTCCCCCTCCTCGGTGGGAGACGAGACCCTGCCCCA
TGGCCACAGCGGCGTCGAACAAATTCAGACAAAAAATAATACGGGCTTCG
ATATGGGGAAACCATCGTATCACGCGGACACTTGGTGGAAGGCATATGAT
CCGGTTCATCCAGAGTTGCCCATTGTCGACATCGGTAGCGGTTTAGGTTC
CAACGTCCTGGCTGCTCTCAAAACAGGTGCGCGTGTCATCGCCATTGACA
TGAGCGACGAGCACCTCGAAGAGATCCGCAGCAAGGCCGCCAAAGAGCAC
AACGGGGCTCAAGGCGCGAACGAGGGTGACAAAATGGCAGAACGCTTGGA
AACCCGCTGGGGACAATTGCCCGACAAGGTTCCTTTGGAGGCAGAGTCGG
TGAGTGGCATCATGTGTGCACAAGTCCTCCATTTCCTGAATCCGGATGAC
GTGGTGACATCATTCCGGAACTTCGCGCACTGGCTGGCCCCGGGGGGGGT
TCTTGTGGTGTTGGTGTGTTCGCACTACCAAAAGCTGTGCTACGGTATCC
CGGGGAAGGTGGCAGCAATAGATGCAGCAACGGAAAAAGATCCTGAAGGA
TTTCATGGTTTTACCCCCGCGGGAAAATCCAGTCAAGAGATGTTTGATGC
CATGTTAGAATCCGTCCCTGCAGAGGTGCGAGCAGCCGTCCCGGGCAGGA
GCCAGCAATTTCAAACCTTTGCCCCTCCGCAGCTACGGGCTGTTGCAATA
AAATGTGGATTGGAAGTGGACTTGGTCGAGTTTGCGGATGGACGTTTGAG
TAATTACCCTGTATTTTTGTATGGGGAAAAGGAGGAGGAGCGCGGACGAG
AGCAGGTAGTCTTGGTGGCGCGGAAACCGAAGATGTGAATGGCCAGTAGT
GCTTCCCCCTCCTCGGTGGGAGACGAGACCCTGCCCCATGGCCACAGCGG
CGTCGAACAAATTCAGACAAAAAATAATACGGGCTTCGATATGGGGAAAC
CATCGTATCACGCGGACACTTGGTGGAAGGCATATGATCCGGTTCATCCA
GAGTTGCCCATTGTCGACATCGGTAGCGGTTTAGGTTCCAACGTCCTGGC
TGCTCTCAAAACAGGTGCGCGTGTCATCGCCATTGACATGAGCGACGAGC
ACCTCGAAGAGATCCGCAGCAAGGCCGCCAAAGAGCACAACGGGGCTCAA
GGCGCGAACGAGGGTGACAAAATGGCAGAACGCTTGGAAACCCGCTGGGG
ACAATTGCCCGACAAGGTTCCTTTGGAGGCAGAGTCGGTGAGTGGCATCA
TGTGTGCACAAGTCCTCCATTTCCTGAATCCGGATGACGTGGTGACATCA
TTCCGGAACTTCGCGCACTGGCTGGCCCCGGGGGGGGTTCTTGTGGTGTT
GGTGTGTTCGCACTACCAAAAGCTGTGCTACGGTATCCCGGGGAAGGTGG
CAGCAATAGATGCAGCAACGGAAAAAGATCCTGAAGGATTTCATGGTTTT
ACCCCCGCGGGAAAATCCAGTCAAGAGATGTTTGATGCCATGTTAGAATC
CGTCCCTGCAGAGGTGCGAGCAGCCGTCCCGGGCAGGAGCCAGCAATTTC
AAACCTTTGCCCCTCCGCAGCTACGGGCTGTTGCAATAAAATGTGGATTG
GAAGTGGACTTGGTCGAGTTTGCGGATGGACGTTTGAGTAATTACCCTGT
ATTTTTGTATGGGGAAAAGGAGGAGGAGCGCGGACGAGAGCAGGTAGTCT
TGGTGGCGCGGAAACCGAAGATGTGA
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Synonyms
Publications