jgi.p|Nanoce1779_2|574699, mRNA_932 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574699
Unique Name	mRNA_932
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1742
Alignment location	scaffold_2:782821..784562 -

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Properties


Property Name	Value
TranscriptId	574785
Track	FilteredModels2
ProteinId	574699

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:782821..784562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574699	gene_932	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574699	mRNA_932-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_932	CDS_932	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:782821..784562-
coding sequence from alignment at scaffold_2:782821..784562-

mRNA sequence

>mRNA_932 ID=mRNA_932|Name=jgi.p|Nanoce1779_2|574699|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp
AGGCACGCGAAGCAGGTAACCGTTGTCCACTCCTTGGCAGCCTCTAGCAG
GATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTCATCATTCTGC
TGTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTTACGTCAACCG
GGATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCTTGCTGCACGA
AATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGATAGCGCCACGT
TGCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAAGGCGCTTATG
GATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCATACAATCGCT
GCCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAAGGTGCGCTCA
AGGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCTCAAGGGACTC
GCACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAGGAGGCTCTGT
TGAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACTGTAGACGTGG
ACAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGGTGTGCTTAAA
ACACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACGCAGGCGCCAT
CATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAACCTCTTATTG
ACCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGTCTCCAAGTTC
ACGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGACCTTATCACC
GGCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAACCTTTTCAATA
CCGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCATATTGACCCCG
AACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTCCCATTCTGGT
CGCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTCCAGGATCCTG
CAGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGGGTTGGGCAAA
GGTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTCACTTCATTGC
ACAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGTCTTCGGAATG
GTGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTTCGGACCCACA
GGTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGATCGTCAGGTG
GGATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTGGCACCCTCGG
CAGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGAAAAGCAGTCT
AAGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGGTGCTGGAAAA
AGCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGCAAGCAAGCGG
AAGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGCTGAGGCCCAA
GCGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACACGATTGTGAG
CAAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCTGTCCCCAGCC
CGAGACCGACTGTGGGACCGAGCGAGTAGATAGATGGGATCCGGAGATGT
GATCTCATTCCATCCCTTTGTTTTTAAAACGTCATTTTATATAGACCAGC
TTAAGCAAGAAGAATCAAATATGAATTAAAGATCGTCACAGA

protein sequence of jgi.p|Nanoce1779_2|574699

>mRNA_932-protein ID=mRNA_932-protein|Name=jgi.p|Nanoce1779_2|574699|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MLSSSARGVLVVVIILLYSSVLAFVVRPPLRQPGSSRARTLVLKASLLHE
MAQQWPLIMLAADSATLQDQLPSINIEDAKALMDSFPKAPEIPANIIQSL
PKLNLPELSSQLEGALKAAQDATPGAIDSLKGLAQDLQDTVGKIQQGGSV
ELPSLSSLPSLPTVDVDSFPLSGEVKAQLGVLKTQVGDAVGSRFSNAGAI
IGEQLDKVLTPYQPLIDQTKSQLSDKFSLVSKFTEKATRELSKDAETLSP
ALQVLRSVGTPRNLFNTENLIVLPFWVSVILTPNNGLVKGLMSSYIPILV
AALAYTWSAYLAFQDPAALEGFASISDITGLGKGLGSEAGTATAWAHFIA
QDLFVGRWIYLDGLRNGVWTAHSLTLAFLFGPTGILSHLATRSLVKIVRW
DVADIMTAGSQSVAPSAAEDMAKAMIKDAEKQSKGALRAADSQADKVLEK
AKAEARKIVVEARKQAEGALASEGKILANAEAQAQSILVDAQKKADTIVS
KASSAASAAAVASVPSPRPTVGPSE*

mRNA from alignment at scaffold_2:782821..784562-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_932 ID=mRNA_932|Name=jgi.p|Nanoce1779_2|574699|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at scaffold_2:782821..784562- (Nannochloropsis oceanica)
AGGCACGCGAAGCAGGTAACCGTTGTCCACTCCTTGGCAGCCTCTAGCAG
GATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTCATCATTCTGC
TGTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTTACGTCAACCG
GGATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCTTGCTGCACGA
AATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGATAGCGCCACGT
TGCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAAGGCGCTTATG
GATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCATACAATCGCT
GCCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAAGGTGCGCTCA
AGGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCTCAAGGGACTC
GCACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAGGAGGCTCTGT
TGAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACTGTAGACGTGG
ACAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGGTGTGCTTAAA
ACACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACGCAGGCGCCAT
CATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAACCTCTTATTG
ACCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGTCTCCAAGTTC
ACGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGACCTTATCACC
GGCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAACCTTTTCAATA
CCGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCATATTGACCCCG
AACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTCCCATTCTGGT
CGCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTCCAGGATCCTG
CAGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGGGTTGGGCAAA
GGTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTCACTTCATTGC
ACAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGTCTTCGGAATG
GTGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTTCGGACCCACA
GGTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGATCGTCAGGTG
GGATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTGGCACCCTCGG
CAGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGAAAAGCAGTCT
AAGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGGTGCTGGAAAA
AGCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGCAAGCAAGCGG
AAGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGCTGAGGCCCAA
GCGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACACGATTGTGAG
CAAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCTGTCCCCAGCC
CGAGACCGACTGTGGGACCGAGCGAGTAGATAGATGGGATCCGGAGATGT
GATCTCATTCCATCCCTTTGTTTTTAAAACGTCATTTTATATAGACCAGC
TTAAGCAAGAAGAATCAAATATGAATTAAAGATCGTCACAGA

Coding sequence (CDS) from alignment at scaffold_2:782821..784562-

>mRNA_932 ID=mRNA_932|Name=jgi.p|Nanoce1779_2|574699|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at scaffold_2:782821..784562- (Nannochloropsis oceanica)
ATGCTTTCGTCTTCTGCTCGAGGCGTCCTCGTCGTCGTCATCATTCTGCT
GTATTCCAGCGTCCTTGCTTTCGTCGTGCGCCCACCTTTACGTCAACCGG
GATCGTCTCGGGCTCGGACTCTTGTGTTGAAGGCTTCCTTGCTGCACGAA
ATGGCGCAGCAGTGGCCTTTGATCATGCTCGCAGCAGATAGCGCCACGTT
GCAAGACCAACTTCCCTCCATCAACATTGAGGACGCTAAGGCGCTTATGG
ATAGTTTCCCCAAAGCCCCCGAGATCCCGGCCAACATCATACAATCGCTG
CCCAAATTGAATTTACCAGAACTCTCCTCTCAACTAGAAGGTGCGCTCAA
GGCGGCCCAAGACGCGACGCCCGGAGCCATCGACAGCCTCAAGGGACTCG
CACAAGATCTGCAGGACACGGTCGGAAAAATTCAACAAGGAGGCTCTGTT
GAGTTACCCTCCCTTTCTTCCCTCCCATCTTTGCCAACTGTAGACGTGGA
CAGCTTCCCTCTGAGTGGAGAAGTGAAGGCGCAGCTGGGTGTGCTTAAAA
CACAAGTCGGCGATGCTGTTGGCTCGAGGTTTTCAAACGCAGGCGCCATC
ATAGGGGAGCAGTTGGATAAGGTGCTCACGCCGTACCAACCTCTTATTGA
CCAGACTAAGAGCCAGCTTTCGGACAAATTTTCCCTCGTCTCCAAGTTCA
CGGAGAAGGCGACACGAGAGTTAAGTAAAGACGCAGAGACCTTATCACCG
GCTTTGCAGGTACTTCGATCGGTGGGAACCCCCCGCAACCTTTTCAATAC
CGAGAACTTGATCGTCTTGCCTTTTTGGGTGAGCGTCATATTGACCCCGA
ACAACGGCCTGGTCAAGGGGCTTATGTCATCCTATATTCCCATTCTGGTC
GCGGCGTTGGCGTATACATGGAGTGCATATTTGGCTTTCCAGGATCCTGC
AGCGTTGGAGGGCTTTGCGTCTATTTCTGATATCACCGGGTTGGGCAAAG
GTTTGGGAAGCGAGGCGGGCACAGCCACGGCATGGGCTCACTTCATTGCA
CAAGATCTGTTTGTGGGCCGGTGGATTTATCTGGATGGTCTTCGGAATGG
TGTATGGACGGCGCATTCCTTGACGCTTGCATTCTTGTTCGGACCCACAG
GTATTTTGTCTCACCTGGCGACAAGATCGTTGGTCAAGATCGTCAGGTGG
GATGTCGCCGATATCATGACGGCCGGATCTCAATCAGTGGCACCCTCGGC
AGCCGAGGACATGGCAAAAGCCATGATCAAAGATGCCGAAAAGCAGTCTA
AGGGAGCGTTGCGCGCAGCAGACAGTCAGGCGGATAAGGTGCTGGAAAAA
GCCAAAGCAGAAGCCCGCAAGATTGTCGTGGAAGCACGCAAGCAAGCGGA
AGGGGCCTTGGCGAGCGAGGGAAAGATTCTGGCCAATGCTGAGGCCCAAG
CGCAAAGCATTTTGGTTGATGCCCAGAAGAAAGCGGACACGATTGTGAGC
AAGGCGAGCTCTGCGGCATCAGCAGCAGCGGTGGCATCTGTCCCCAGCCC
GAGACCGACTGTGGGACCGAGCGAGTAG

Synonyms

Publications