jgi.p|Nanoce1779_2|606370, mRNA_9319 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606370
Unique NamemRNA_9319
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1233
Alignment locationscaffold_35:67892..69801 -

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Properties
Property NameValue
TranscriptId606456
TrackFilteredModels2
ProteinId606370
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:67892..69801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606370gene_9319Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606370mRNA_9319-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9319CDS_9319Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9319 ID=mRNA_9319|Name=jgi.p|Nanoce1779_2|606370|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp
AGACGCCTACTCAGGCCACAAAGATATGACGGTAAAAGAGGATCGAGAAC
ACTTTGCATTGAAGCTGCAGGCGGAGGCCAAGGCAAGCTTGGAGCAAATC
CCGGAAAAAGAAGCCGCTTGGGAAGCAGAGCGAAAGAATGGCAATCCCGA
TTTGAACGCGAAATTTATTTATGCCTACGTCTTGTGCATGTCGGCCTCGG
ATCGACACAAGAAACTCGGAATCCGGCTTATGAATGAGCTCATCACGGCG
CGTTTCAACGTCGAGGAGTGCTTGTATGCGACAGCCGTATGCCTTTACAG
CCAAGGAGAATGGCAGGGAGCCAGGGACAAGGTAGACCGATTGCTGCGGT
TGAACCCTGACCATCGCTACGGGAATGAGCTGCACCTCTATGTCAAAGAT
GCTCAAGCTAAGCAGGATCTTGCCGTCGGGGTAGGAGTAGGAGTCGGCGT
CTTGGGCGCAACGGCCGCGATCCTTTTGGGAGCTTTTTTGGGGGGTGGCC
GGCGAGGGCGTTAGACATAATTGATTTTAGTGGAAGGAACGAGAAAAATA
CAGGATAATTCATTCCTTGAGAAGATGCAGTATTTATGCATTTTTTGAAG
TGATGGGCGGTGGGGAGTAGAAGCGAAGGATGGGGCGTAGTTTGAAAGAA
AGGTTGTACAAAGACACACAAAAATGGCGCGAAAATTGGAATGGCCTCGG
TCTTGACCCAGGGTGGTGATGACTACGTGGCTCGTCGGGAAGGTCTGTTA
TTGGATATCTTTTTGGCATGGAAAAGGCGCGAATAAAATGGTTGTAGACA
AACAACAAAGGGTGTAGACGTAGGGAGGGTCGCGGTTAATGGGCAGATTG
TTGGCATGGACGACGCGTGTGGCGGAAGGGATTCACCGGGCCTCTCGTTC
ATTTCTTGTCTGTTGAATGAAAAAATGACATCCTCATTTGCAACATTGAA
CGAGGACAGAGGGGGGAGAGTCGGTTTCTCCTTGCATAAATCCTCCTTTT
GAAGGGTAGCTGTGCATGTCGGTAGTTCTTTATGTGCAAAACGTATTTTT
AATTATTGATGCGCCCCCTAGGCAGTCCGTTTACCTACGCGCCTCTTCCC
TCCTCTCTCATCTGTCAAGTGGATTCGCTATTTTGGCATTTCCTTCTTGT
CCATTCGTCCCCATCCTCCCCCTCCTCCTACACCCTCACTGTTCCCACTG
CCAGTATCTCCTCCTCCCCTTCTTCCCCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|606370

>mRNA_9319-protein ID=mRNA_9319-protein|Name=jgi.p|Nanoce1779_2|606370|organism=Nannochloropsis oceanica|type=polypeptide|length=163bp
MTVKEDREHFALKLQAEAKASLEQIPEKEAAWEAERKNGNPDLNAKFIYA
YVLCMSASDRHKKLGIRLMNELITARFNVEECLYATAVCLYSQGEWQGAR
DKVDRLLRLNPDHRYGNELHLYVKDAQAKQDLAVGVGVGVGVLGATAAIL
LGAFLGGGRRGR*
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mRNA from alignment at scaffold_35:67892..69801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9319 ID=mRNA_9319|Name=jgi.p|Nanoce1779_2|606370|organism=Nannochloropsis oceanica|type=mRNA|length=1910bp|location=Sequence derived from alignment at scaffold_35:67892..69801- (Nannochloropsis oceanica)
AGACGCCTACTCAGGCCACAAAGATATGACGGTAAAAGAGGATCGAGAAC
ACTTTGCATTGAAGCTGCAGGCGGAGGCCAAGGCAAGCTTGGAGCAAATC
CCGGTAAGGAGGCAGGACGGGTGAGGCGGAGGAGGAACATGGAGGGGGAA
GATAGGGCGAAGAAGAGAATAGAACATGAATGCGTGGATTAAGACGGCTA
CAGAAGTCGTTTGCATAGACAGCATATGTGGGTGGGGAGGAAGAGCAATG
CAATCCGCGGTGGTGCTTGGTTACCTCTCTCCCATGTGCCCACAGTCTCC
TTCATCCCTCCCTGACGCCCTTTCTTGTCTCTTTTCCTCGTTACAACAGG
AAAAAGAAGCCGCTTGGGAAGCAGAGCGAAAGAATGGCAATCCCGATTTG
AACGCGAAATTTATTTATGCCTACGTCTTGTGCATGTCGGCCTCGGATCG
ACACAAGAAACTCGGAATCCGGCTTATGAATGGTGAGTGTGGAGGAAGGG
ATGAAGGGGGGTAGGAGGTGCGTGAAAGGAGCAGGATTGAGCTTGAATGT
AAAATATTTTTTCCAGTGGTGGTTATTGACGAATTGGGAAGGGAGAGCAC
GACTTATGTTTTCTCTCACCCTAGATATATCCCTCCCATCCTTTCTCCCT
CCCTACCCTTCAGAGCTCATCACGGCGCGTTTCAACGTCGAGGAGTGCTT
GTATGCGACAGCCGTATGCCTTTACAGCCAAGGAGAATGGCAGGGAGCCA
GGGACAAGGTAGACCGATTGCTGCGGTTGAACCCTGACCATCGCTACGGG
AATGAGCTGCACCTCTATGTCAAAGATGCTCAAGGTATGGAGGGGAGGAA
AGGTGGGCGAGGTGGGCGGGCAGGAGAGAAAGAAGGGAAGGAAGGAACGA
CAGGGAGGAAGCATGTGGGAGAACAGATTTTGTTTACAATCGACATCAAC
TGCATATGACATCAACTGCATATCCATAAACGCCCCGCCATGGACCTCGC
TCATCCAATCCTTAACTTTTTAGATTTATTTAAATTCGAATCTTCAATCT
TACGCGCATGTAACTTTTTCTGACAACCGTACAGCTAAGCAGGATCTTGC
CGTCGGGGTAGGAGTAGGAGTCGGCGTCTTGGGCGCAACGGCCGCGATCC
TTTTGGGAGCTTTTTTGGGGGGTGGCCGGCGAGGGCGTTAGACATAATTG
ATTTTAGTGGAAGGAACGAGAAAAATACAGGATAATTCATTCCTTGAGAA
GATGCAGTATTTATGCATTTTTTGAAGTGATGGGCGGTGGGGAGTAGAAG
CGAAGGATGGGGCGTAGTTTGAAAGAAAGGTTGTACAAAGACACACAAAA
ATGGCGCGAAAATTGGAATGGCCTCGGTCTTGACCCAGGGTGGTGATGAC
TACGTGGCTCGTCGGGAAGGTCTGTTATTGGATATCTTTTTGGCATGGAA
AAGGCGCGAATAAAATGGTTGTAGACAAACAACAAAGGGTGTAGACGTAG
GGAGGGTCGCGGTTAATGGGCAGATTGTTGGCATGGACGACGCGTGTGGC
GGAAGGGATTCACCGGGCCTCTCGTTCATTTCTTGTCTGTTGAATGAAAA
AATGACATCCTCATTTGCAACATTGAACGAGGACAGAGGGGGGAGAGTCG
GTTTCTCCTTGCATAAATCCTCCTTTTGAAGGGTAGCTGTGCATGTCGGT
AGTTCTTTATGTGCAAAACGTATTTTTAATTATTGATGCGCCCCCTAGGC
AGTCCGTTTACCTACGCGCCTCTTCCCTCCTCTCTCATCTGTCAAGTGGA
TTCGCTATTTTGGCATTTCCTTCTTGTCCATTCGTCCCCATCCTCCCCCT
CCTCCTACACCCTCACTGTTCCCACTGCCAGTATCTCCTCCTCCCCTTCT
TCCCCCCTCC
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Coding sequence (CDS) from alignment at scaffold_35:67892..69801-

>mRNA_9319 ID=mRNA_9319|Name=jgi.p|Nanoce1779_2|606370|organism=Nannochloropsis oceanica|type=CDS|length=1956bp|location=Sequence derived from alignment at scaffold_35:67892..69801- (Nannochloropsis oceanica)
CTAAGCAGGATCTTGCCGTCGGGGTAGGAGTAGGAGTCGGCGTCTTGGGC
GCAACGGCCGCGATCCTTTTGGGAGCTTTTTTGGGGGGTGGCCGGCGAGG
GCGTTAGAGCTCATCACGGCGCGTTTCAACGTCGAGGAGTGCTTGTATGC
GACAGCCGTATGCCTTTACAGCCAAGGAGAATGGCAGGGAGCCAGGGACA
AGGTAGACCGATTGCTGCGGTTGAACCCTGACCATCGCTACGGGAATGAG
CTGCACCTCTATGTCAAAGATGCTCAAGGAAAAAGAAGCCGCTTGGGAAG
CAGAGCGAAAGAATGGCAATCCCGATTTGAACGCGAAATTTATTTATGCC
TACGTCTTGTGCATGTCGGCCTCGGATCGACACAAGAAACTCGGAATCCG
GCTTATGAATGATGACGGTAAAAGAGGATCGAGAACACTTTGCATTGAAG
CTGCAGGCGGAGGCCAAGGCAAGCTTGGAGCAAATCCCGCTAAGCAGGAT
CTTGCCGTCGGGGTAGGAGTAGGAGTCGGCGTCTTGGGCGCAACGGCCGC
GATCCTTTTGGGAGCTTTTTTGGGGGGTGGCCGGCGAGGGCGTTAGAGCT
CATCACGGCGCGTTTCAACGTCGAGGAGTGCTTGTATGCGACAGCCGTAT
GCCTTTACAGCCAAGGAGAATGGCAGGGAGCCAGGGACAAGGTAGACCGA
TTGCTGCGGTTGAACCCTGACCATCGCTACGGGAATGAGCTGCACCTCTA
TGTCAAAGATGCTCAAGGAAAAAGAAGCCGCTTGGGAAGCAGAGCGAAAG
AATGGCAATCCCGATTTGAACGCGAAATTTATTTATGCCTACGTCTTGTG
CATGTCGGCCTCGGATCGACACAAGAAACTCGGAATCCGGCTTATGAATG
ATGACGGTAAAAGAGGATCGAGAACACTTTGCATTGAAGCTGCAGGCGGA
GGCCAAGGCAAGCTTGGAGCAAATCCCGCTAAGCAGGATCTTGCCGTCGG
GGTAGGAGTAGGAGTCGGCGTCTTGGGCGCAACGGCCGCGATCCTTTTGG
GAGCTTTTTTGGGGGGTGGCCGGCGAGGGCGTTAGAGCTCATCACGGCGC
GTTTCAACGTCGAGGAGTGCTTGTATGCGACAGCCGTATGCCTTTACAGC
CAAGGAGAATGGCAGGGAGCCAGGGACAAGGTAGACCGATTGCTGCGGTT
GAACCCTGACCATCGCTACGGGAATGAGCTGCACCTCTATGTCAAAGATG
CTCAAGGAAAAAGAAGCCGCTTGGGAAGCAGAGCGAAAGAATGGCAATCC
CGATTTGAACGCGAAATTTATTTATGCCTACGTCTTGTGCATGTCGGCCT
CGGATCGACACAAGAAACTCGGAATCCGGCTTATGAATGATGACGGTAAA
AGAGGATCGAGAACACTTTGCATTGAAGCTGCAGGCGGAGGCCAAGGCAA
GCTTGGAGCAAATCCCGCTAAGCAGGATCTTGCCGTCGGGGTAGGAGTAG
GAGTCGGCGTCTTGGGCGCAACGGCCGCGATCCTTTTGGGAGCTTTTTTG
GGGGGTGGCCGGCGAGGGCGTTAGAGCTCATCACGGCGCGTTTCAACGTC
GAGGAGTGCTTGTATGCGACAGCCGTATGCCTTTACAGCCAAGGAGAATG
GCAGGGAGCCAGGGACAAGGTAGACCGATTGCTGCGGTTGAACCCTGACC
ATCGCTACGGGAATGAGCTGCACCTCTATGTCAAAGATGCTCAAGGAAAA
AGAAGCCGCTTGGGAAGCAGAGCGAAAGAATGGCAATCCCGATTTGAACG
CGAAATTTATTTATGCCTACGTCTTGTGCATGTCGGCCTCGGATCGACAC
AAGAAACTCGGAATCCGGCTTATGAATGATGACGGTAAAAGAGGATCGAG
AACACTTTGCATTGAAGCTGCAGGCGGAGGCCAAGGCAAGCTTGGAGCAA
ATCCCG
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Synonyms
Publications