jgi.p|Nanoce1779_2|533292, mRNA_9318 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533292
Unique Name	mRNA_9318
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1665
Alignment location	scaffold_35:66333..67997 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	533378
Track	FilteredModels2
ProteinId	533292

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:66333..67997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533292	gene_9318	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533292	mRNA_9318-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9318	CDS_9318	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:66333..67997+
coding sequence from alignment at scaffold_35:66333..67997+

mRNA sequence

>mRNA_9318 ID=mRNA_9318|Name=jgi.p|Nanoce1779_2|533292|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp
ATGGTTGAGGTGGGTTGCTCGGACGACGGGGAAGAGAAGGAGGACGAGAA
GGAAGGGGAGGAGGATGGAGAGTCGACAGAGAGCGAGAATGAAGGGAAGG
GTAGACAGGGAAATGGCAAGAGAAAGGCGACAAAAACAGAGGAAAAGGAT
TGCGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAAGGAAAAAAGAAGGAAGCTCTCCGCCGAGCTATTTTCCCCCTCCTCTT
CCTCCTCCTCTTCCTCTCTCTGTGTCTCCACCTCCACCACCATTACCAAA
ACCACTGCCAACCATAGCAACAACCACGACCAAGCAGCCTCCGTTCTCCC
TCAGTCCCTTCCTCCGTCCATCCCTTCTTCCAAAGGCAATGATCGCTGGG
TAGCCCTCGACGTTCTCCGAGGCCGACTCGACGACCCCTGCTCCCACGAA
CGTTCCCTCCTCTCCTCCCGCCCTTCTTCCCTCCTGCCCTCCTCCTCCAC
CTCGCAATGGCTCTACGTCCTGGGAGTGGACAATGAAGGGTGGTTGACGG
ACGTGACACGCAGGTACAGCACGCGATGGTCGCGCGCACTCCGATTCCGA
GCCGGGGAGTGGTGGGCAGGCTATTTGGAACAAGCAAACTCGGCACTGGC
GCACCGAAGGGAAGCGAGGTTACTGGAGAAGGGGGACTTTCGATCGTTTT
TTGAATTTGAAACGGCTCGGGATTTAGAGAGGGATGAGTTGAATGAGGCG
GAGACTAAGGAGCCAATGCCAACTACATGGGCAGGATTCGAGAAACATCA
GAAATATGTGTTGGAGAGGCATTTGAAACGCTGGGAGGTGATTGGGGTGG
AGGACGGGGAGGAAGGCGGAAAGAAGGGGAGGAGGAAAGTGTTAGGGATG
TTCAAGGGCGAATGTGTGTATGATAGGAGGAAGGTACAGGAGGGGGCGAC
AGTACGACAGTGGCTCCAAAAGCATGGAAGGCAGGTGAGGGAGGGGGAGA
AGCCGTGCAGAATCGTGGAGAGCAAGAGTAAGAGCGATAAGAAGAAGAAA
AAGAAGACGGGCAACCCGGGGCAGGAAGAAGAGGAAGAAGACGGCAAGGA
GGAGGGAGGAAAGGAGGGCGGGAAGCCCGACGCACTGGAACTGTACGGAT
TTTGGCAAACGGAACGGTACCAGCCCCCGGCGCTCTTGCCCAATGGGAGG
ATCCCTGTGAATGAACACGGTAATATAGAAGTCTGGAATCATAATCCCGT
TTTCTTGCCAAAGGGGACGGCGCACGTGTGGGGGGAGGGAGGAGGGGAGT
GGGCCGTGGCTCAAAAGTTGGGAGTGAGGTATGCACGGGCGGTGGTGGGG
TGGGAGGTACGGCAAGGGCGAACGTTGCCTGTAGTGGAGGGTGTCGTGGT
TCGGAAGGAAGACGAGGGGGTTCTACGGGATGGGTTGAGAGCTTGGCAGG
TGGGGAAGGAGGAGAAGGCGGCCAAGGCGAAGGAGAAGAGGGTGGTGGAG
AGGTGGGCTCGATTTGTGAAGGGTTTGCGGATTGCACGAGACTTGCAGAA
GAAGTACGGGGAGGGGGGAAGAAGGGGAGGAGGAGATACTGGCAGTGGGA
ACAGTGAGGGTGTAGGAGGAGGGGGAGGATGGGGACGAATGGACAAGAAG
GAAATGCCAAAATAG

protein sequence of jgi.p|Nanoce1779_2|533292

>mRNA_9318-protein ID=mRNA_9318-protein|Name=jgi.p|Nanoce1779_2|533292|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MVEVGCSDDGEEKEDEKEGEEDGESTESENEGKGRQGNGKRKATKTEEKD
CASSNSSSSSSSSSSNSKEKRRKLSAELFSPSSSSSSSSLCVSTSTTITK
TTANHSNNHDQAASVLPQSLPPSIPSSKGNDRWVALDVLRGRLDDPCSHE
RSLLSSRPSSLLPSSSTSQWLYVLGVDNEGWLTDVTRRYSTRWSRALRFR
AGEWWAGYLEQANSALAHRREARLLEKGDFRSFFEFETARDLERDELNEA
ETKEPMPTTWAGFEKHQKYVLERHLKRWEVIGVEDGEEGGKKGRRKVLGM
FKGECVYDRRKVQEGATVRQWLQKHGRQVREGEKPCRIVESKSKSDKKKK
KKTGNPGQEEEEEDGKEEGGKEGGKPDALELYGFWQTERYQPPALLPNGR
IPVNEHGNIEVWNHNPVFLPKGTAHVWGEGGGEWAVAQKLGVRYARAVVG
WEVRQGRTLPVVEGVVVRKEDEGVLRDGLRAWQVGKEEKAAKAKEKRVVE
RWARFVKGLRIARDLQKKYGEGGRRGGGDTGSGNSEGVGGGGGWGRMDKK
EMPK*

mRNA from alignment at scaffold_35:66333..67997+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9318 ID=mRNA_9318|Name=jgi.p|Nanoce1779_2|533292|organism=Nannochloropsis oceanica|type=mRNA|length=1665bp|location=Sequence derived from alignment at scaffold_35:66333..67997+ (Nannochloropsis oceanica)
ATGGTTGAGGTGGGTTGCTCGGACGACGGGGAAGAGAAGGAGGACGAGAA
GGAAGGGGAGGAGGATGGAGAGTCGACAGAGAGCGAGAATGAAGGGAAGG
GTAGACAGGGAAATGGCAAGAGAAAGGCGACAAAAACAGAGGAAAAGGAT
TGCGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAAGGAAAAAAGAAGGAAGCTCTCCGCCGAGCTATTTTCCCCCTCCTCTT
CCTCCTCCTCTTCCTCTCTCTGTGTCTCCACCTCCACCACCATTACCAAA
ACCACTGCCAACCATAGCAACAACCACGACCAAGCAGCCTCCGTTCTCCC
TCAGTCCCTTCCTCCGTCCATCCCTTCTTCCAAAGGCAATGATCGCTGGG
TAGCCCTCGACGTTCTCCGAGGCCGACTCGACGACCCCTGCTCCCACGAA
CGTTCCCTCCTCTCCTCCCGCCCTTCTTCCCTCCTGCCCTCCTCCTCCAC
CTCGCAATGGCTCTACGTCCTGGGAGTGGACAATGAAGGGTGGTTGACGG
ACGTGACACGCAGGTACAGCACGCGATGGTCGCGCGCACTCCGATTCCGA
GCCGGGGAGTGGTGGGCAGGCTATTTGGAACAAGCAAACTCGGCACTGGC
GCACCGAAGGGAAGCGAGGTTACTGGAGAAGGGGGACTTTCGATCGTTTT
TTGAATTTGAAACGGCTCGGGATTTAGAGAGGGATGAGTTGAATGAGGCG
GAGACTAAGGAGCCAATGCCAACTACATGGGCAGGATTCGAGAAACATCA
GAAATATGTGTTGGAGAGGCATTTGAAACGCTGGGAGGTGATTGGGGTGG
AGGACGGGGAGGAAGGCGGAAAGAAGGGGAGGAGGAAAGTGTTAGGGATG
TTCAAGGGCGAATGTGTGTATGATAGGAGGAAGGTACAGGAGGGGGCGAC
AGTACGACAGTGGCTCCAAAAGCATGGAAGGCAGGTGAGGGAGGGGGAGA
AGCCGTGCAGAATCGTGGAGAGCAAGAGTAAGAGCGATAAGAAGAAGAAA
AAGAAGACGGGCAACCCGGGGCAGGAAGAAGAGGAAGAAGACGGCAAGGA
GGAGGGAGGAAAGGAGGGCGGGAAGCCCGACGCACTGGAACTGTACGGAT
TTTGGCAAACGGAACGGTACCAGCCCCCGGCGCTCTTGCCCAATGGGAGG
ATCCCTGTGAATGAACACGGTAATATAGAAGTCTGGAATCATAATCCCGT
TTTCTTGCCAAAGGGGACGGCGCACGTGTGGGGGGAGGGAGGAGGGGAGT
GGGCCGTGGCTCAAAAGTTGGGAGTGAGGTATGCACGGGCGGTGGTGGGG
TGGGAGGTACGGCAAGGGCGAACGTTGCCTGTAGTGGAGGGTGTCGTGGT
TCGGAAGGAAGACGAGGGGGTTCTACGGGATGGGTTGAGAGCTTGGCAGG
TGGGGAAGGAGGAGAAGGCGGCCAAGGCGAAGGAGAAGAGGGTGGTGGAG
AGGTGGGCTCGATTTGTGAAGGGTTTGCGGATTGCACGAGACTTGCAGAA
GAAGTACGGGGAGGGGGGAAGAAGGGGAGGAGGAGATACTGGCAGTGGGA
ACAGTGAGGGTGTAGGAGGAGGGGGAGGATGGGGACGAATGGACAAGAAG
GAAATGCCAAAATAG

Coding sequence (CDS) from alignment at scaffold_35:66333..67997+

>mRNA_9318 ID=mRNA_9318|Name=jgi.p|Nanoce1779_2|533292|organism=Nannochloropsis oceanica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_35:66333..67997+ (Nannochloropsis oceanica)
ATGGTTGAGGTGGGTTGCTCGGACGACGGGGAAGAGAAGGAGGACGAGAA
GGAAGGGGAGGAGGATGGAGAGTCGACAGAGAGCGAGAATGAAGGGAAGG
GTAGACAGGGAAATGGCAAGAGAAAGGCGACAAAAACAGAGGAAAAGGAT
TGCGCCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAG
CAAGGAAAAAAGAAGGAAGCTCTCCGCCGAGCTATTTTCCCCCTCCTCTT
CCTCCTCCTCTTCCTCTCTCTGTGTCTCCACCTCCACCACCATTACCAAA
ACCACTGCCAACCATAGCAACAACCACGACCAAGCAGCCTCCGTTCTCCC
TCAGTCCCTTCCTCCGTCCATCCCTTCTTCCAAAGGCAATGATCGCTGGG
TAGCCCTCGACGTTCTCCGAGGCCGACTCGACGACCCCTGCTCCCACGAA
CGTTCCCTCCTCTCCTCCCGCCCTTCTTCCCTCCTGCCCTCCTCCTCCAC
CTCGCAATGGCTCTACGTCCTGGGAGTGGACAATGAAGGGTGGTTGACGG
ACGTGACACGCAGGTACAGCACGCGATGGTCGCGCGCACTCCGATTCCGA
GCCGGGGAGTGGTGGGCAGGCTATTTGGAACAAGCAAACTCGGCACTGGC
GCACCGAAGGGAAGCGAGGTTACTGGAGAAGGGGGACTTTCGATCGTTTT
TTGAATTTGAAACGGCTCGGGATTTAGAGAGGGATGAGTTGAATGAGGCG
GAGACTAAGGAGCCAATGCCAACTACATGGGCAGGATTCGAGAAACATCA
GAAATATGTGTTGGAGAGGCATTTGAAACGCTGGGAGGTGATTGGGGTGG
AGGACGGGGAGGAAGGCGGAAAGAAGGGGAGGAGGAAAGTGTTAGGGATG
TTCAAGGGCGAATGTGTGTATGATAGGAGGAAGGTACAGGAGGGGGCGAC
AGTACGACAGTGGCTCCAAAAGCATGGAAGGCAGGTGAGGGAGGGGGAGA
AGCCGTGCAGAATCGTGGAGAGCAAGAGTAAGAGCGATAAGAAGAAGAAA
AAGAAGACGGGCAACCCGGGGCAGGAAGAAGAGGAAGAAGACGGCAAGGA
GGAGGGAGGAAAGGAGGGCGGGAAGCCCGACGCACTGGAACTGTACGGAT
TTTGGCAAACGGAACGGTACCAGCCCCCGGCGCTCTTGCCCAATGGGAGG
ATCCCTGTGAATGAACACGGTAATATAGAAGTCTGGAATCATAATCCCGT
TTTCTTGCCAAAGGGGACGGCGCACGTGTGGGGGGAGGGAGGAGGGGAGT
GGGCCGTGGCTCAAAAGTTGGGAGTGAGGTATGCACGGGCGGTGGTGGGG
TGGGAGGTACGGCAAGGGCGAACGTTGCCTGTAGTGGAGGGTGTCGTGGT
TCGGAAGGAAGACGAGGGGGTTCTACGGGATGGGTTGAGAGCTTGGCAGG
TGGGGAAGGAGGAGAAGGCGGCCAAGGCGAAGGAGAAGAGGGTGGTGGAG
AGGTGGGCTCGATTTGTGAAGGGTTTGCGGATTGCACGAGACTTGCAGAA
GAAGTACGGGGAGGGGGGAAGAAGGGGAGGAGGAGATACTGGCAGTGGGA
ACAGTGAGGGTGTAGGAGGAGGGGGAGGATGGGGACGAATGGACAAGAAG
GAAATGCCAAAATAG

Synonyms

Publications