jgi.p|Nanoce1779_2|633450, mRNA_9317 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633450
Unique Name	mRNA_9317
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1694
Alignment location	scaffold_35:64149..66078 +

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Properties


Property Name	Value
TranscriptId	633536
Track	FilteredModels2
ProteinId	633450

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:64149..66078 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633450	gene_9317	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633450	mRNA_9317-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9317	CDS_9317	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:64149..66078+
coding sequence from alignment at scaffold_35:64149..66078+

mRNA sequence

>mRNA_9317 ID=mRNA_9317|Name=jgi.p|Nanoce1779_2|633450|organism=Nannochloropsis oceanica|type=mRNA|length=1694bp
CTACACCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAG
GCCGTGGCAGCAAGAAGGCGTAAAGTTCTACCTCGATGTTCGCTAGCTAG
AAGGAAGAAAGGAGAGGAGGGAGGATGAGAAAAATCGGTGGTAGGAAAGC
AGAGTTAACTTGACGCTGCGGTGTGATGGGCCTGGATGCCTTCCTAGGGA
CGTGAGTTGGTTTGGTTTGGGGGGAATACTTCCACCTGGTCGATTCGCGT
GGGTAAAGAATATAGAAAAGGAAACAGGCAATTGCATCTGTGGCCAAGGC
TTCATACGGTATTAATTATGGTTGTGATCACTTCACGCTGTTGGTGCTAC
GCTGACCTTGCTGCTTCTTGTTGGGAAGAGAGGGTGGGGAAGGCCCCGAA
GAGACATGCCTTCGTCCAAACTTTTTTGTGCCTTTGCGCTCACCTTCGCG
TTCGCTCACATCACGCTACCACCATGCCTATCACAACGCTGTCTGCTTAT
TTGTCCACGCTTTTCAGCCTTCCTGGTACGACTTTGATGTGACTTAACGA
CCACTTATAGGAAAAATCGATATGTTCCGATCTATCTCGACGGTCACTGT
GTCTTCAAATATGCCCAAAACTATACAACGTTACTCATATCTTATGGCTC
AATCCAATATCTAGCCTGCAGGTAATGTCGCTCTAGACCCATACTAATAA
GCTAATAAGCTAATAAGGGTTACACATTGTATCAATTTGAAATATTTTTT
ATCAACCTCCTCCCTTTCTCTGCTCACCCCCAACCCCGACGAGCAGCGCT
GCAAGGCGGTAATGGCGGAGGAGGTGCAGTCTATGGGGACGCAGGCTACC
ACTGTAGTCGACAGCAGCAGTGGCAGCAGTGGCGATGACAGGCAGGCCGC
TGCAAGGGTGCACGGCCAAGTGGAAGTGGAAGGCTTGATAAGGAAGCAAG
CCGACGATGACGGAAATGATCGGGATGAAGAGGGAAAAGAGCAGGAGGAC
GAGGATGATATGGAGTGGGAGGACGCAGACGATCTGGGCTTGCCGCCATT
GCCCCTCTTCGAGGAGGGAGGGAAGGAGGGAGGGGAGGACGAGGAAAACG
ACGAAGAGGACGAGGATGAGGGAGACGAGGCCCTACGACGTTTTCTGGAC
AGCAACGATGACGGCGGGCTGGTTGTCACCTTTGAAAAAGACGAGAAGGA
AAAAGAACGAGACACAGACAAGGCCAACCAGAAAAAACACGGGCTGGCCT
CGCGCCGGACACGGAAGGAGCTCTGGCGGGACTTTCGCATTCACACGGCT
CATCTCGCCCTCCTCACCCACCGTGCCCACCTCCTCTCGCACTCCGCCTC
CCACCCGTCCCTCCTCTCTGCCGCCGCTGCCCTTGTCCCATCTGCCCTCC
GTCGCTCCCTTCGACGGGGACCTTCCGTCTCGGCGCTTGCTCGGCTTTTG
CTTTGGTTCAACGCGACCTACACACAGCTCCCTGATTCAACTCTGACAGA
GGAGGAAGGGAGGGAAGGCTCTTGTTCCCCCAGGCAGTTGCTTGAGGTGG
TCAGTATGAGGGAGGGAGGGGGGGCGGAGCTGATTCAGGTGCTGGTGGCG
ACCTTGAGAGGGGTCGGGGTAAGAGCGCGTTTCGTTTCGCCTTTGTGCCC
TCGAAGCTACCACCACCCGCCTTATCTGATCAGGCGAAGGAGGG

protein sequence of jgi.p|Nanoce1779_2|633450

>mRNA_9317-protein ID=mRNA_9317-protein|Name=jgi.p|Nanoce1779_2|633450|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MAEEVQSMGTQATTVVDSSSGSSGDDRQAAARVHGQVEVEGLIRKQADDD
GNDRDEEGKEQEDEDDMEWEDADDLGLPPLPLFEEGGKEGGEDEENDEED
EDEGDEALRRFLDSNDDGGLVVTFEKDEKEKERDTDKANQKKHGLASRRT
RKELWRDFRIHTAHLALLTHRAHLLSHSASHPSLLSAAAALVPSALRRSL
RRGPSVSALARLLLWFNATYTQLPDSTLTEEEGREGSCSPRQLLEVVSMR
EGGGAELIQVLVATLRGVGVRARFVSPLCPRSYHHPPYLIRRRR

mRNA from alignment at scaffold_35:64149..66078+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9317 ID=mRNA_9317|Name=jgi.p|Nanoce1779_2|633450|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp|location=Sequence derived from alignment at scaffold_35:64149..66078+ (Nannochloropsis oceanica)
CTACACCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAG
GCCGTGGCAGCAAGAAGGCGTAAAGTTCTACCTCGATGTTCGCTAGCTAG
AAGGAAGAAAGGAGAGGAGGGAGGATGAGAAAAATCGGTGGTAGGAAAGC
AGAGTTAACTTGACGCTGCGGTGTGATGGGCCTGGATGCCTTCCTAGGGA
CGTGAGTTGGTTTGGTTTGGGGGGAATACTTCCACCTGGTCGATTCGCGT
GGGTAAAGAATATAGAAAAGGAAACAGGCAATTGCATCTGTGGCCAAGGC
TTCATACGGTATTAATTATGGTTGTGATCACTTCACGCTGTTGGTGCTAC
GCTGACCTTGCTGCTTCTTGTTGGGAAGAGAGGGTGGGGAAGGCCCCGAA
GAGACATGCCTTCGTCCAAACTTTTTTGTGCCTTTGCGCTCACCTTCGCG
TTCGCTCACATCACGCTACCACCATGCCTATCACAACGCTGTCTGCTTAT
TTGTCCACGCTTTTCAGCCTTCCTGGTACGACTTTGATGTGACTTAACGA
CCACTTATAGGAAAAATCGATATGTTCCGATCTATCTCGACGGTCACTGT
GTCTTCAAATATGCCCAAAACTATACAACGTTACTCATATCTTATGGCTC
AATCCAATATCTAGCCTGCAGGTAATGTCGCTCTAGACCCATACTAATAA
GCTAATAAGCTAATAAGGGTTACACATTGTATCAATTTGAAATATTTTTT
ATCAACCTCCTCCCTTTCTCTGCTCACCCCCAACCCCGACGAGCAGCGCT
GCAAGGCGGTAATGGCGGAGGAGGTGCAGTCTATGGGGACGCAGGCTACC
ACTGTAGTCGACAGCAGCAGTGGCAGCAGTGGCGATGACAGGCAGGCCGC
TGCAAGGGTGCACGGCCAAGTGGAAGTGGAAGGCTTGATAAGGAAGCAAG
GTATGTGTCTGTGAGCCCTACTCCACCCTCCCTTCCATTTTTTCGTCCGT
CCCCATGTACAAAGACTCGTATCGCACGCACAAAAGGATAATGAAGAGGA
TTTGACCGAGAAACTCGTAGGCCCTTGACCCAGGCGGTCCTTCATTCTGT
CCTCCCTCCTTCTCCTTGGCCTCACTCTCCCTCCTTACTTTTCTCCTTTC
CTCCTTCCATACCACGGGTATTCAAACCTACTGAAGCCGACGATGACGGA
AATGATCGGGATGAAGAGGGAAAAGAGCAGGAGGACGAGGATGATATGGA
GTGGGAGGACGCAGACGATCTGGGCTTGCCGCCATTGCCCCTCTTCGAGG
AGGGAGGGAAGGAGGGAGGGGAGGACGAGGAAAACGACGAAGAGGACGAG
GATGAGGGAGACGAGGCCCTACGACGTTTTCTGGACAGCAACGATGACGG
CGGGCTGGTTGTCACCTTTGAAAAAGACGAGAAGGAAAAAGAACGAGACA
CAGACAAGGCCAACCAGAAAAAACACGGGCTGGCCTCGCGCCGGACACGG
AAGGAGCTCTGGCGGGACTTTCGCATTCACACGGCTCATCTCGCCCTCCT
CACCCACCGTGCCCACCTCCTCTCGCACTCCGCCTCCCACCCGTCCCTCC
TCTCTGCCGCCGCTGCCCTTGTCCCATCTGCCCTCCGTCGCTCCCTTCGA
CGGGGACCTTCCGTCTCGGCGCTTGCTCGGCTTTTGCTTTGGTTCAACGC
GACCTACACACAGCTCCCTGATTCAACTCTGACAGAGGAGGAAGGGAGGG
AAGGCTCTTGTTCCCCCAGGCAGTTGCTTGAGGTGGTCAGTATGAGGGAG
GGAGGGGGGGCGGAGCTGATTCAGGTGCTGGTGGCGACCTTGAGAGGGGT
CGGGGTAAGAGCGCGTTTCGTTTCGCCTTTGTGCCCTCGAAGCTACCACC
ACCCGCCTTATCTGATCAGGCGAAGGAGGG

Coding sequence (CDS) from alignment at scaffold_35:64149..66078+

>mRNA_9317 ID=mRNA_9317|Name=jgi.p|Nanoce1779_2|633450|organism=Nannochloropsis oceanica|type=CDS|length=1764bp|location=Sequence derived from alignment at scaffold_35:64149..66078+ (Nannochloropsis oceanica)
ATGGCGGAGGAGGTGCAGTCTATGGGGACGCAGGCTACCACTGTAGTCGA
CAGCAGCAGTGGCAGCAGTGGCGATGACAGGCAGGCCGCTGCAAGGGTGC
ACGGCCAAGTGGAAGTGGAAGGCTTGATAAGGAAGCAAGCCGACGATGAC
GGAAATGATCGGGATGAAGAGGGAAAAGAGCAGGAGGACGAGGATGATAT
GGAGTGGGAGGACGCAGACGATCTGGGCTTGCCGCCATTGCCCCTCTTCG
AGGAGGGAGGGAAGGAGGGAGGGGAGGACGAGGAAAACGACGAAGAGGAC
GAGGATGAGGGAGACGAGGCCCTACGACGTTTTCTGGACAGCAACGATGA
CGGCGGGCTGGTTGTCACCTTTGAAAAAGACGAGAAGGAAAAAGAACGAG
ACACAGACAAGGCCAACCAGAAAAAACACGGGCTGGCCTCGCGCCGGACA
CGGAAGGAGCTCTGGCGGGACTTTCGCATTCACACGGCTCATCTCGCCCT
CCTCACCCACCGTGCCCACCTCCTCTCGCACTCCGCCTCCCACCCGTCCC
TCCTCTCTGCCGCCGCTGCCCTTGTCCCATCTGCCCTCCGTCGCTCCCTT
CGACGGGGACCTTCCGTCTCGGCGCTTGCTCGGCTTTTGCTTTGGTTCAA
CGCGACCTACACACAGCTCCCTGATTCAACTCTGACAGAGGAGGAAGGGA
GGGAAGGCTCTTGTTCCCCCAGGCAGTTGCTTGAGGTGGTCAGTATGAGG
GAGGGAGGGGGGGCGGAGCTGATTCAGGTGCTGGTGGCGACCTTGAGAGG
GGTCGGGGTAAGAGCGCGTTTCGTTTCGCCTTTGTGCCCTCGAAGCTACC
ACCACCCGCCTTATCTGATCAGGCGAAGGAGGATGGCGGAGGAGGTGCAG
TCTATGGGGACGCAGGCTACCACTGTAGTCGACAGCAGCAGTGGCAGCAG
TGGCGATGACAGGCAGGCCGCTGCAAGGGTGCACGGCCAAGTGGAAGTGG
AAGGCTTGATAAGGAAGCAAGCCGACGATGACGGAAATGATCGGGATGAA
GAGGGAAAAGAGCAGGAGGACGAGGATGATATGGAGTGGGAGGACGCAGA
CGATCTGGGCTTGCCGCCATTGCCCCTCTTCGAGGAGGGAGGGAAGGAGG
GAGGGGAGGACGAGGAAAACGACGAAGAGGACGAGGATGAGGGAGACGAG
GCCCTACGACGTTTTCTGGACAGCAACGATGACGGCGGGCTGGTTGTCAC
CTTTGAAAAAGACGAGAAGGAAAAAGAACGAGACACAGACAAGGCCAACC
AGAAAAAACACGGGCTGGCCTCGCGCCGGACACGGAAGGAGCTCTGGCGG
GACTTTCGCATTCACACGGCTCATCTCGCCCTCCTCACCCACCGTGCCCA
CCTCCTCTCGCACTCCGCCTCCCACCCGTCCCTCCTCTCTGCCGCCGCTG
CCCTTGTCCCATCTGCCCTCCGTCGCTCCCTTCGACGGGGACCTTCCGTC
TCGGCGCTTGCTCGGCTTTTGCTTTGGTTCAACGCGACCTACACACAGCT
CCCTGATTCAACTCTGACAGAGGAGGAAGGGAGGGAAGGCTCTTGTTCCC
CCAGGCAGTTGCTTGAGGTGGTCAGTATGAGGGAGGGAGGGGGGGCGGAG
CTGATTCAGGTGCTGGTGGCGACCTTGAGAGGGGTCGGGGTAAGAGCGCG
TTTCGTTTCGCCTTTGTGCCCTCGAAGCTACCACCACCCGCCTTATCTGA
TCAGGCGAAGGAGG

Synonyms

Publications