jgi.p|Nanoce1779_2|606363, mRNA_9316 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606363
Unique Name	mRNA_9316
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1564
Alignment location	scaffold_35:63009..65530 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606449
Track	FilteredModels2
ProteinId	606363

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:63009..65530 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606363	gene_9316	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606363	mRNA_9316-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9316	CDS_9316	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:63009..65530+
coding sequence from alignment at scaffold_35:63009..65530+

mRNA sequence

>mRNA_9316 ID=mRNA_9316|Name=jgi.p|Nanoce1779_2|606363|organism=Nannochloropsis oceanica|type=mRNA|length=1564bp
ACAGCTACCACCACTACATTCACTACATTAGCACAATGGCGGACGCGTTG
GTTTGGGAATGTGTCAAGAGCAACAACTGCTTTTTGGTGAAGCGTGGCCG
CACCGCCCGCGTGGGGAGCGTGCAGTTTTCTAGTGAGCCGTTCAATCTGG
CGAAAAAGAACAGCTTCAAGAACAGCGGGGTGGCCAACAGCAAGGCCATT
GACCTGTCGGTGGTGGAGGGAGGCAAACACGGCCCTAAGATTGTCCTGTC
GTCCAAGGGCAAGAAGTCTCTCTACAAGCCCGCGACCCTCTCCCACCAGA
CCCCCCTGAACAAAGCCTTCCGTACCAGCAGCAAGAGCATCAAGGCTCTG
ACAGACAAGAGTGGCTATCGCAAAGACTTGCAGCAGGCGGCCTTGGCCCG
ATATGCTTTGTTGAAACGCTACACCCAGGTCAAGAAGGGGTTGGCCAAGC
CCTCTCCGGTCAAGAAAGGCCGTGGCAGCAAGAAGGCGTAAAGTTCTACC
TCGATGTTCGCTAGCTAGAAGGAAGAAAGGAGAGGAGGGAGGATGAGAAA
AATCGGTGGTAGGAAAGCAGAGTTAACTTGACGCTGCGGTGTGATGGGCC
TGGATGCCTTCCTAGGGACGTGAGTTGGTTTGGTTTGGGGGGAATACTTC
CACCTGGTCGATTCGCGTGGGTAAAGAATATAGAAAAGGAAACAGGCAAT
TGCATCTGTGGCCAAGGCTTCATACGGTATTAATTATGGTTGTGATCACT
TCACGCTGTTGGTGCTACGCTGACCTTGCTGCTTCTTGTTGGGAAGAGAG
GGTGGGGAAGGCCCCGAAGAGACATGCCTTCGTCCAAACTTTTTTGTGCC
TTTGCGCTCACCTTCGCGTTCGCTCACATCACGCTACCACCATGCCTATC
ACAACGCTGTCTGCTTATTTGTCCACGCTTTTCAGCCTTCCTGGTACGAC
TTTGATGTGACTTAACGACCACTTATAGGAAAAATCGATATGTTCCGATC
TATCTCGACGGTCACTGTGTCTTCAAATATGCCCAAAACTATACAACGTT
ACTCATATCTTATGGCTCAATCCAATATCTAGCCTGCAGGTAATGTCGCT
CTAGACCCATACTAATAAGCTAATAAGCTAATAAGGGTTACACATTGTAT
CAATTTGAAATATTTTTTATCAACCTCCTCCCTTTCTCTGCTCACCCCCA
ACCCCGACGAGCAGCGCTGCAAGGCGGTAATGGCGGAGGAGGTGCAGTCT
ATGGGGACGCAGGCTACCACTGTAGTCGACAGCAGCAGTGGCAGCAGTGG
CGATGACAGGCAGGCCGCTGCAAGGGTGCACGGCCAAGTGGAAGTGGAAG
GCTTGATAAGGAAGCAAGCCGACGATGACGGAAATGATCGGGATGAAGAG
GGAAAAGAGCAGGAGGACGAGGATGATATGGAGTGGGAGGACGCAGACGA
TCTGGGCTTGCCGCCATTGCCCCTCTTCGAGGAGGGAGGGAAGGAGGGAG
GGGAGGACGAGGAAAACGACGAAGAGGACGAGGATGAGGGAGACGAGGCC
CTACGACGTTTTCT

protein sequence of jgi.p|Nanoce1779_2|606363

>mRNA_9316-protein ID=mRNA_9316-protein|Name=jgi.p|Nanoce1779_2|606363|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MADALVWECVKSNNCFLVKRGRTARVGSVQFSSEPFNLAKKNSFKNSGVA
NSKAIDLSVVEGGKHGPKIVLSSKGKKSLYKPATLSHQTPLNKAFRTSSK
SIKALTDKSGYRKDLQQAALARYALLKRYTQVKKGLAKPSPVKKGRGSKK
A*

mRNA from alignment at scaffold_35:63009..65530+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9316 ID=mRNA_9316|Name=jgi.p|Nanoce1779_2|606363|organism=Nannochloropsis oceanica|type=mRNA|length=2522bp|location=Sequence derived from alignment at scaffold_35:63009..65530+ (Nannochloropsis oceanica)
ACAGCTACCACCACTACATTCACTACATTAGCACAATGGCGGACGCGTTG
GTTTGGGAATGTGTCAAGGTAAGTGAGGAGCGAGACGAGGGGAGAGGAAA
GATGATAGACATCAGGGAGACGAATGAGAGGGGGTCAGCGTACTGCTGCT
ACGGCGGCGGGAACCACTGCCTCCGATAGCTATCGTTGACATGTTGCGGA
GTTGCTGGGGGGAAGATGAAGTGGAGAAGGGCATAGGCACTATTTTGGCC
CGTGAGGAGAGACGGCCGGGGTGGGAATGTAGAAGCTCCCGCTGCTGAGG
AAGGAGTTGCACGCCACGACTCACCTTCCAGTCGCCCCCAATTCTCCTCG
TTGAGAATGGCCTTTGCTTTAAGTTTTATAGATGAAGGAATCGGTCGCCG
GTGGTTGGTGCACAAGGCTGCCCTACGCAAGCGTCTTTCCTCCCTCACTC
TCTCCCTCCCTCCTTCCCTCCCTCCCTCCCCTCTCGCAGAGCAACAACTG
CTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTT
CTAGTGAGCCGTTCAATCTGGCGAAAAAGAACAGCTTCAAGAACAGCGGG
GTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACA
CGGCCCTAAGATTGTCCTGTCGTCCAAGGTAAAAAGGAAGCCAGGGAGGG
AGGGGGAAAAGGAGGCTGAAAGGGGGGATAAAATAAAAAATATGCCCAGC
AATATTGCAACTACCATACGCGCCATTGACCCCTTGGTATGCCTCCCTGC
CTCCCTCCCTCTCAGGGCAAGAAGTCTCTCTACAAGCCCGCGACCCTCTC
CCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGCAGCAAGAGCATCA
AGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTTGCAGCAGGCGGCC
TTGGCCCGATATGCTTTGTTGAAACGGTGAGGGAGAGAGGGAAGGAAGGA
GGAGGCGGGCGGGTTTTTTTGTTTCCGGATGTTTTTTGTCTCATTGGCCA
TACATGCACAACCATTAAATAGCTTTTTCTCCCCTCGTCAAGCTATTCAC
GTTGTCCCTCCCTCCCTCCCTCCCTTTGTCTAATCCTCAGCTACACCCAG
GTCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAGGCCGTGGCAG
CAAGAAGGCGTAAAGTTCTACCTCGATGTTCGCTAGCTAGAAGGAAGAAA
GGAGAGGAGGGAGGATGAGAAAAATCGGTGGTAGGAAAGCAGAGTTAACT
TGACGCTGCGGTGTGATGGGCCTGGATGCCTTCCTAGGGACGTGAGTTGG
TTTGGTTTGGGGGGAATACTTCCACCTGGTCGATTCGCGTGGGTAAAGAA
TATAGAAAAGGAAACAGGCAATTGCATCTGTGGCCAAGGCTTCATACGGT
ATTAATTATGGTTGTGATCACTTCACGCTGTTGGTGCTACGCTGACCTTG
CTGCTTCTTGTTGGGAAGAGAGGGTGGGGAAGGCCCCGAAGAGACATGCC
TTCGTCCAAACTTTTTTGTGCCTTTGCGCTCACCTTCGCGTTCGCTCACA
TCACGCTACCACCATGCCTATCACAACGCTGTCTGCTTATTTGTCCACGC
TTTTCAGCCTTCCTGGTACGACTTTGATGTGACTTAACGACCACTTATAG
GAAAAATCGATATGTTCCGATCTATCTCGACGGTCACTGTGTCTTCAAAT
ATGCCCAAAACTATACAACGTTACTCATATCTTATGGCTCAATCCAATAT
CTAGCCTGCAGGTAATGTCGCTCTAGACCCATACTAATAAGCTAATAAGC
TAATAAGGGTTACACATTGTATCAATTTGAAATATTTTTTATCAACCTCC
TCCCTTTCTCTGCTCACCCCCAACCCCGACGAGCAGCGCTGCAAGGCGGT
AATGGCGGAGGAGGTGCAGTCTATGGGGACGCAGGCTACCACTGTAGTCG
ACAGCAGCAGTGGCAGCAGTGGCGATGACAGGCAGGCCGCTGCAAGGGTG
CACGGCCAAGTGGAAGTGGAAGGCTTGATAAGGAAGCAAGGTATGTGTCT
GTGAGCCCTACTCCACCCTCCCTTCCATTTTTTCGTCCGTCCCCATGTAC
AAAGACTCGTATCGCACGCACAAAAGGATAATGAAGAGGATTTGACCGAG
AAACTCGTAGGCCCTTGACCCAGGCGGTCCTTCATTCTGTCCTCCCTCCT
TCTCCTTGGCCTCACTCTCCCTCCTTACTTTTCTCCTTTCCTCCTTCCAT
ACCACGGGTATTCAAACCTACTGAAGCCGACGATGACGGAAATGATCGGG
ATGAAGAGGGAAAAGAGCAGGAGGACGAGGATGATATGGAGTGGGAGGAC
GCAGACGATCTGGGCTTGCCGCCATTGCCCCTCTTCGAGGAGGGAGGGAA
GGAGGGAGGGGAGGACGAGGAAAACGACGAAGAGGACGAGGATGAGGGAG
ACGAGGCCCTACGACGTTTTCT

Coding sequence (CDS) from alignment at scaffold_35:63009..65530+

>mRNA_9316 ID=mRNA_9316|Name=jgi.p|Nanoce1779_2|606363|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_35:63009..65530+ (Nannochloropsis oceanica)
ATGGCGGACGCGTTGGTTTGGGAATGTGTCAAGAGCAACAACTGCTTTTT
GGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTTCTAGTG
AGCCGTTCAATCTGGCGAAAAAGAACAGCTTCAAGAACAGCGGGGTGGCC
AACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACACGGCCC
TAAGATTGTCCTGTCGTCCAAGGGCAAGAAGTCTCTCTACAAGCCCGCGA
CCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGCAGCAAG
AGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTTGCAGCA
GGCGGCCTTGGCCCGATATGCTTTGTTGAAACGCTACACCCAGGTCAAGA
AGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAGGCCGTGGCAGCAAGAAG
GCGTAAATGGCGGACGCGTTGGTTTGGGAATGTGTCAAGAGCAACAACTG
CTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGCAGTTTT
CTAGTGAGCCGTTCAATCTGGCGAAAAAGAACAGCTTCAAGAACAGCGGG
GTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGGCAAACA
CGGCCCTAAGATTGTCCTGTCGTCCAAGGGCAAGAAGTCTCTCTACAAGC
CCGCGACCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGTACCAGC
AGCAAGAGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAAAGACTT
GCAGCAGGCGGCCTTGGCCCGATATGCTTTGTTGAAACGCTACACCCAGG
TCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAGGCCGTGGCAGC
AAGAAGGCGTAAATGGCGGACGCGTTGGTTTGGGAATGTGTCAAGAGCAA
CAACTGCTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGAGCGTGC
AGTTTTCTAGTGAGCCGTTCAATCTGGCGAAAAAGAACAGCTTCAAGAAC
AGCGGGGTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGAGGGAGG
CAAACACGGCCCTAAGATTGTCCTGTCGTCCAAGGGCAAGAAGTCTCTCT
ACAAGCCCGCGACCCTCTCCCACCAGACCCCCCTGAACAAAGCCTTCCGT
ACCAGCAGCAAGAGCATCAAGGCTCTGACAGACAAGAGTGGCTATCGCAA
AGACTTGCAGCAGGCGGCCTTGGCCCGATATGCTTTGTTGAAACGCTACA
CCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAAGGCCGT
GGCAGCAAGAAGGCGTAAATGGCGGACGCGTTGGTTTGGGAATGTGTCAA
GAGCAACAACTGCTTTTTGGTGAAGCGTGGCCGCACCGCCCGCGTGGGGA
GCGTGCAGTTTTCTAGTGAGCCGTTCAATCTGGCGAAAAAGAACAGCTTC
AAGAACAGCGGGGTGGCCAACAGCAAGGCCATTGACCTGTCGGTGGTGGA
GGGAGGCAAACACGGCCCTAAGATTGTCCTGTCGTCCAAGGGCAAGAAGT
CTCTCTACAAGCCCGCGACCCTCTCCCACCAGACCCCCCTGAACAAAGCC
TTCCGTACCAGCAGCAAGAGCATCAAGGCTCTGACAGACAAGAGTGGCTA
TCGCAAAGACTTGCAGCAGGCGGCCTTGGCCCGATATGCTTTGTTGAAAC
GCTACACCCAGGTCAAGAAGGGGTTGGCCAAGCCCTCTCCGGTCAAGAAA
GGCCGTGGCAGCAAGAAGGCGTAA

Synonyms

Publications