jgi.p|Nanoce1779_2|606348, mRNA_9312 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606348
Unique NamemRNA_9312
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length430
Alignment locationscaffold_35:53972..54401 +

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Properties
Property NameValue
TranscriptId606434
TrackFilteredModels2
ProteinId606348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:53972..54401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606348gene_9312Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606348mRNA_9312-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9312CDS_9312Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9312 ID=mRNA_9312|Name=jgi.p|Nanoce1779_2|606348|organism=Nannochloropsis oceanica|type=mRNA|length=430bp
CCCCCCCTCCCTCCCTCCCTCCTTGGTGGTTGGGGTCCAAGCGAGCCAGG
CCTCTACTTACAAATGGAGAACAGAACGGAGGAGGGATGAACTCTATTCC
CCACCTCTTCCCTTCTCTGCCTATGTACCCTCTTTCCTTCCTTTTTTTCT
CCTTTACTCAGTCTATTTGTCGGTCTATCTCTTCGTTTCTAATTATTCCC
TCGTCGTTTCTAATCATATTCCCCCTTTTGCCGATACCCCTTCCTGCTGT
CTTGATTCGTCTCTTTTCCCCTCCTTCCACATTGTATCTCGCGCATTTTT
AGTCATCTGTACTTATGTAATGTACCTCCCCTCTTCCTCGTCCTCCTCCT
CCTCCTCCTCTTCCTATCCCCCCCTTTATCCTCCTTATTCCTTCGTCCCC
ACTTACTCCATATGCCTCTTTCTGTTTCTC
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protein sequence of jgi.p|Nanoce1779_2|606348

>mRNA_9312-protein ID=mRNA_9312-protein|Name=jgi.p|Nanoce1779_2|606348|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MNSIPHLFPSLPMYPLSFLFFSFTQSICRSISSFLIIPSSFLIIFPLLPI
PLPAVLIRLFSPPSTLYLAHF*
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mRNA from alignment at scaffold_35:53972..54401+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9312 ID=mRNA_9312|Name=jgi.p|Nanoce1779_2|606348|organism=Nannochloropsis oceanica|type=mRNA|length=430bp|location=Sequence derived from alignment at scaffold_35:53972..54401+ (Nannochloropsis oceanica)
CCCCCCCTCCCTCCCTCCCTCCTTGGTGGTTGGGGTCCAAGCGAGCCAGG
CCTCTACTTACAAATGGAGAACAGAACGGAGGAGGGATGAACTCTATTCC
CCACCTCTTCCCTTCTCTGCCTATGTACCCTCTTTCCTTCCTTTTTTTCT
CCTTTACTCAGTCTATTTGTCGGTCTATCTCTTCGTTTCTAATTATTCCC
TCGTCGTTTCTAATCATATTCCCCCTTTTGCCGATACCCCTTCCTGCTGT
CTTGATTCGTCTCTTTTCCCCTCCTTCCACATTGTATCTCGCGCATTTTT
AGTCATCTGTACTTATGTAATGTACCTCCCCTCTTCCTCGTCCTCCTCCT
CCTCCTCCTCTTCCTATCCCCCCCTTTATCCTCCTTATTCCTTCGTCCCC
ACTTACTCCATATGCCTCTTTCTGTTTCTC
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Coding sequence (CDS) from alignment at scaffold_35:53972..54401+

>mRNA_9312 ID=mRNA_9312|Name=jgi.p|Nanoce1779_2|606348|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_35:53972..54401+ (Nannochloropsis oceanica)
ATGAACTCTATTCCCCACCTCTTCCCTTCTCTGCCTATGTACCCTCTTTC
CTTCCTTTTTTTCTCCTTTACTCAGTCTATTTGTCGGTCTATCTCTTCGT
TTCTAATTATTCCCTCGTCGTTTCTAATCATATTCCCCCTTTTGCCGATA
CCCCTTCCTGCTGTCTTGATTCGTCTCTTTTCCCCTCCTTCCACATTGTA
TCTCGCGCATTTTTAG
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Synonyms
Publications