jgi.p|Nanoce1779_2|606342, mRNA_9310 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606342
Unique NamemRNA_9310
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1986
Alignment locationscaffold_35:48470..50743 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606428
TrackFilteredModels2
ProteinId606342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:48470..50743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606342gene_9310Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606342mRNA_9310-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9310CDS_9310Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Nanoce1779_2|606342|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp
AAGGCCTCTTGCAGTGACTTCCCACGCACTGCACCGCGTCTCCACGAGCT
GTCAAAGTATGGATAGAGCCGTGTGTGAGTGCGAGTCACTGGTCCAGGGT
ACCCAAAATAAGAGATGGCATGTGGCTTGCGGTCACGACGTGGGCTTGAG
GGCAAAGCTCGAGTCGAAATGGAATAGGGATTTACGCAACAGCGAGTTGG
AGCTGGGTTGCCCCACTACACAATCGTCATATGTCAATATACCATACGTG
TGTAGTGTCACGTGCCGTCCCTGGCAGGCTAATGCGGCTGCCCTTTGGAA
TTTAGTGACAACAAGACGGGATAAGAACAAAAGTAGAGATTCGATTGCTC
ATTCTGTATGCTTACACGGTTTTCCTTTTCACCCTTCCCTGCTCGATACG
CATAATTGCAGCGCCTCATTCCTCCTCCGCCCTTTCCCATCCCTTCCTCT
TTCATTTTCATGTCCCACCGACCTGAAGAATACTCGCTTTTCACTCCCTG
GGATCAAGGCAGCTTTCCCTCAATCGTCAACAACGACAAAGGATACAGTC
TCCTTGTACACTAGCAGTATCAACACCTCCACCTCCTCACATGTCGCCCA
GGCCGCGCCCACTCTCTCAAAGTCACCCTTCCCCTTCGGTAGCTACTGTC
CATCCAGAGGCGTCCCTAATCGAATATCACTCATCCGTCAACACCCTGCC
GATCTCTCTCTCCTCCGTAAAGGCCGGGAGGGAGGGAGTTCAATGCGTAG
GATCCCAGTCAGCTCAATCCTGATTCCCGCTTCCTCTTCTCACTCACTAC
GAGCAGCCGTGGAAAAATTCTCCCCAGGATCTACGCGTCCACCAGGGAGC
CACCACCCTGAAGCATCGAATTTCTGTAGGAAGAGCATACCCATACAAGG
CAGGTTTCTCCTCCATCTCGTTCACGCTCCCCTTCCCATCCCTCTTGCGT
GAACCATGCTTGTTCAACAAATGAGGAGGAAACGGCCCTCCCCGGTCTCT
TCTGCTGCGGCTGCGGCTGCCATTGACGTCGCACCTGAAATAGATGGGAC
AGGTGATGACTGCAGCATTTTCTTGACACATATAGTAAAAAGGGAAGGGC
TGGGGCGTTTGACTGCAAGCGACTGCAGGAAAATTGTGTGCAAAAATCGG
GGGATGGAATCGTCGTGTCGGGTTGGAAATGTATCAAACCACGGTGCACT
TGAAGAAAATCATGAGAGTGATGAGGGAAAATGCAAATGTAAGCGTGCTA
CCATCTGCTGCTGTTATTACAGGCGATGTAAATGCGGACGAATCGTTGTT
GGGCGAGGAGGCGAGAGGGGCAGTGCTAGTGGATGGGCCGTGTTGAGGGT
TGAGTTGAGTGTGGTTGGGAGGTAGGGCCATCAGGAAAGTGTGCTGTCAG
GAGGCAACTGAATACTGTATAATCAGTCATGATTTGAATCTACCATAGAC
CTGACCGAGTTAGAAAAGCAAATGAGATGGGTATTAGCGGGGCCGGGCGA
AACTATTGAAAATTTAAAGATTCGTTAATCACGCCACCTCTATCACCCCC
GATCACACCCCAACGGCATCCGACCAGTTGCCTTCCTTTCGGCCGCCGCA
ATAAATCTAATGTATTCTACGCCATGACTATCAATTGAGCAGCATTCTGC
AGGCAAGGCTAAGCTTTTTAAAATATGGTCATGGCGCTTTTTGTTTCTCG
TGTATACAAGTGCGGAAGAAGTCCCTTGGGTTGTATCTGTCAAATCAAGC
TGGCACTTCTTTCCGCCAGGGACGCGTTTGATTGAACGGAACCTCCGTAA
TTGTCCTCCCCCTTAACAAAATGCCGGAGGACATTGACTCCGTGTTATAA
CAGGAAGCATTTACCTTTCTCTGGCCCCGTCGTCGTATGACTCTTTTTTA
ATCACGACCTCTCAACCTCATTCCCCCCTCTCCCCTTCCCCCCACGCGCT
TCGGAATGGCTACCAGCAGTGAGTCCCCGATCAAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|606342

>mRNA_9310-protein ID=mRNA_9310-protein|Name=jgi.p|Nanoce1779_2|606342|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MDRAVCECESLVQGTQNKRWHVACGHDVGLRAKLESKWNRDLRNSELELG
CPTTQSSYVNIPYVCSVTCRPWQANAAALWNLVTTRRDKNKSRDSIAHSV
CLHGFPFHPSLLDTHNCSASFLLRPFPSLPLSFSCPTDLKNTRFSLPGIK
AAFPQSSTTTKDTVSLYTSSINTSTSSHVAQAAPTLSKSPFPFGSYCPSR
GVPNRISLIRQHPADLSLLRKGREGGSSMRRIPVSSILIPASSSHSLRAA
VEKFSPGSTRPPGSHHPEASNFCRKSIPIQGRFLLHLVHAPLPIPLA*
back to top

mRNA from alignment at scaffold_35:48470..50743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Nanoce1779_2|606342|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at scaffold_35:48470..50743- (Nannochloropsis oceanica)
AAGGCCTCTTGCAGTGACTTCCCACGCACTGCACCGCGTCTCCACGAGCT
GTCAAAGTATGGATAGAGCCGTGTGTGAGTGCGAGTCACTGGTCCAGGGT
ACCCAAAATAAGAGATGGCATGTGGCTTGCGGTCACGACGTGGGCTTGAG
GGCAAAGCTCGAGTCGAAATGGAATAGGGATTTACGCAACAGCGAGTTGG
AGCTGGGTTGCCCCACTACACAATCGTCATATGTCAATATACCATACGTG
TGTAGTGTCACGTGCCGTCCCTGGCAGGCTAATGCGGCTGCCCTTTGGAA
TTTAGTGACAACAAGACGGGATAAGAACAAAAGTAGAGATTCGATTGCTC
ATTCTGTATGCTTACACGGTTTTCCTTTTCACCCTTCCCTGCTCGATACG
CATAATTGCAGCGCCTCATTCCTCCTCCGCCCTTTCCCATCCCTTCCTCT
TTCATTTTCATGTCCCACCGACCTGAAGAATACTCGCTTTTCACTCCCTG
GGATCAAGGCAGCTTTCCCTCAATCGTCAACAACGACAAAGGATACAGTC
TCCTTGTACACTAGCAGTATCAACACCTCCACCTCCTCACATGTCGCCCA
GGCCGCGCCCACTCTCTCAAAGTCACCCTTCCCCTTCGGTAGCTACTGTC
CATCCAGAGGCGTCCCTAATCGAATATCACTCATCCGTCAACACCCTGCC
GATCTCTCTCTCCTCCGTAAAGGCCGGGAGGGAGGGAGTTCAATGCGTAG
GATCCCAGTCAGCTCAATCCTGATTCCCGCTTCCTCTTCTCACTCACTAC
GAGCAGCCGTGGAAAAATTCTCCCCAGGATCTACGCGTCCACCAGGGAGC
CACCACCCTGAAGCATCGAATTTCTGTAGGAAGGTAGGAAGGGAGGAAAG
GGAGGGCTGAAAGGGAGGGCTGGAAGGGAGAGAGGAAGATTGGCGATTTT
TCAGTGCCTGCTCGTCCTATCCTTGTCTGCTGCTCACTCTTCCAGACACG
ATATAAAGCAAGTGTATGTTGTCCTTAAGCATGTGTTTGTTGTCCTTATC
ACCCTATCTTTCTTCCCTCTTAAAACCCCCCCATCCCAAACTCACTCCCT
CCCTTCCTCCTCCTCACCTGCACCGTCAAAAAATTCCATCCATCCTCCTC
CCTCCGCCGCACCACCACTAGAGCATACCCATACAAGGCAGGTTTCTCCT
CCATCTCGTTCACGCTCCCCTTCCCATCCCTCTTGCGTGAACCATGCTTG
TTCAACAAATGAGGAGGAAACGGCCCTCCCCGGTCTCTTCTGCTGCGGCT
GCGGCTGCCATTGACGTCGCACCTGAAATAGATGGGACAGGTGATGACTG
CAGCATTTTCTTGACACATATAGTAAAAAGGGAAGGGCTGGGGCGTTTGA
CTGCAAGCGACTGCAGGAAAATTGTGTGCAAAAATCGGGGGATGGAATCG
TCGTGTCGGGTTGGAAATGTATCAAACCACGGTGCACTTGAAGAAAATCA
TGAGAGTGATGAGGGAAAATGCAAATGTAAGCGTGCTACCATCTGCTGCT
GTTATTACAGGCGATGTAAATGCGGACGAATCGTTGTTGGGCGAGGAGGC
GAGAGGGGCAGTGCTAGTGGATGGGCCGTGTTGAGGGTTGAGTTGAGTGT
GGTTGGGAGGTAGGGCCATCAGGAAAGTGTGCTGTCAGGAGGCAACTGAA
TACTGTATAATCAGTCATGATTTGAATCTACCATAGACCTGACCGAGTTA
GAAAAGCAAATGAGATGGGTATTAGCGGGGCCGGGCGAAACTATTGAAAA
TTTAAAGATTCGTTAATCACGCCACCTCTATCACCCCCGATCACACCCCA
ACGGCATCCGACCAGTTGCCTTCCTTTCGGCCGCCGCAATAAATCTAATG
TATTCTACGCCATGACTATCAATTGAGCAGCATTCTGCAGGCAAGGCTAA
GCTTTTTAAAATATGGTCATGGCGCTTTTTGTTTCTCGTGTATACAAGTG
CGGAAGAAGTCCCTTGGGTTGTATCTGTCAAATCAAGCTGGCACTTCTTT
CCGCCAGGGACGCGTTTGATTGAACGGAACCTCCGTAATTGTCCTCCCCC
TTAACAAAATGCCGGAGGACATTGACTCCGTGTTATAACAGGAAGCATTT
ACCTTTCTCTGGCCCCGTCGTCGTATGACTCTTTTTTAATCACGACCTCT
CAACCTCATTCCCCCCTCTCCCCTTCCCCCCACGCGCTTCGGAATGGCTA
CCAGCAGTGAGTCCCCGATCAAGC
back to top

Coding sequence (CDS) from alignment at scaffold_35:48470..50743-

>mRNA_9310 ID=mRNA_9310|Name=jgi.p|Nanoce1779_2|606342|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_35:48470..50743- (Nannochloropsis oceanica)
AGCATACCCATACAAGGCAGGTTTCTCCTCCATCTCGTTCACGCTCCCCT
TCCCATCCCTCTTGCGTGAATGGATAGAGCCGTGTGTGAGTGCGAGTCAC
TGGTCCAGGGTACCCAAAATAAGAGATGGCATGTGGCTTGCGGTCACGAC
GTGGGCTTGAGGGCAAAGCTCGAGTCGAAATGGAATAGGGATTTACGCAA
CAGCGAGTTGGAGCTGGGTTGCCCCACTACACAATCGTCATATGTCAATA
TACCATACGTGTGTAGTGTCACGTGCCGTCCCTGGCAGGCTAATGCGGCT
GCCCTTTGGAATTTAGTGACAACAAGACGGGATAAGAACAAAAGTAGAGA
TTCGATTGCTCATTCTGTATGCTTACACGGTTTTCCTTTTCACCCTTCCC
TGCTCGATACGCATAATTGCAGCGCCTCATTCCTCCTCCGCCCTTTCCCA
TCCCTTCCTCTTTCATTTTCATGTCCCACCGACCTGAAGAATACTCGCTT
TTCACTCCCTGGGATCAAGGCAGCTTTCCCTCAATCGTCAACAACGACAA
AGGATACAGTCTCCTTGTACACTAGCAGTATCAACACCTCCACCTCCTCA
CATGTCGCCCAGGCCGCGCCCACTCTCTCAAAGTCACCCTTCCCCTTCGG
TAGCTACTGTCCATCCAGAGGCGTCCCTAATCGAATATCACTCATCCGTC
AACACCCTGCCGATCTCTCTCTCCTCCGTAAAGGCCGGGAGGGAGGGAGT
TCAATGCGTAGGATCCCAGTCAGCTCAATCCTGATTCCCGCTTCCTCTTC
TCACTCACTACGAGCAGCCGTGGAAAAATTCTCCCCAGGATCTACGCGTC
CACCAGGGAGCCACCACCCTGAAGCATCGAATTTCTGTAGGAAGAGCATA
CCCATACAAGGCAGGTTTCTCCTCCATCTCGTTCACGCTCCCCTTCCCAT
CCCTCTTGCGTGAATGGATAGAGCCGTGTGTGAGTGCGAGTCACTGGTCC
AGGGTACCCAAAATAAGAGATGGCATGTGGCTTGCGGTCACGACGTGGGC
TTGAGGGCAAAGCTCGAGTCGAAATGGAATAGGGATTTACGCAACAGCGA
GTTGGAGCTGGGTTGCCCCACTACACAATCGTCATATGTCAATATACCAT
ACGTGTGTAGTGTCACGTGCCGTCCCTGGCAGGCTAATGCGGCTGCCCTT
TGGAATTTAGTGACAACAAGACGGGATAAGAACAAAAGTAGAGATTCGAT
TGCTCATTCTGTATGCTTACACGGTTTTCCTTTTCACCCTTCCCTGCTCG
ATACGCATAATTGCAGCGCCTCATTCCTCCTCCGCCCTTTCCCATCCCTT
CCTCTTTCATTTTCATGTCCCACCGACCTGAAGAATACTCGCTTTTCACT
CCCTGGGATCAAGGCAGCTTTCCCTCAATCGTCAACAACGACAAAGGATA
CAGTCTCCTTGTACACTAGCAGTATCAACACCTCCACCTCCTCACATGTC
GCCCAGGCCGCGCCCACTCTCTCAAAGTCACCCTTCCCCTTCGGTAGCTA
CTGTCCATCCAGAGGCGTCCCTAATCGAATATCACTCATCCGTCAACACC
CTGCCGATCTCTCTCTCCTCCGTAAAGGCCGGGAGGGAGGGAGTTCAATG
CGTAGGATCCCAGTCAGCTCAATCCTGATTCCCGCTTCCTCTTCTCACTC
ACTACGAGCAGCCGTGGAAAAATTCTCCCCAGGATCTACGCGTCCACCAG
GGAGCCACCACCCTGAAGCATCGAATTTCTGTAGGAAG
back to top
Synonyms
Publications