jgi.p|Nanoce1779_2|574698, mRNA_931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574698
Unique NamemRNA_931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2304
Alignment locationscaffold_2:780110..782413 -

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Properties
Property NameValue
TranscriptId574784
TrackFilteredModels2
ProteinId574698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:780110..782413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574698gene_931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574698mRNA_931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_931CDS_931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_931 ID=mRNA_931|Name=jgi.p|Nanoce1779_2|574698|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp
GCTCGAATGCTTTCGTTAGTTATCACTATCATGGGAACCATGTCGAAACA
AAATTGGAAAATGTTGCGTTTCTCCCTCGCCCCCCTGAATGTACAGTACA
TGCCAATAGCGTCCTGAATGCGCCATTCCGGCCCCTTTGCAATGCCAAAT
CACATGCGCATGATCAAGCCAAAGCGGACCGTAGCCATGTGGCCTGTTGC
ACGGCCATACCCCCCGTGTGCTGGCAATTATCCCCGGGCCAGATCGTCTG
CTTTGACGTACATCCCGTGCACGAGTGCCACAACATATTTACTGCTACGA
ATCCACCCCTTGCAACCACATTGCACAGGCTCAAGACAAAGTAGAAGCTC
GCCTGAGGCACGGCTACTCCTTGAACCGCAGTGCAATCGTTCTGCGCTTC
GACCATGGCCTACTCTGTGGAAAAGGGCGGCCCTATCACCCCGAACATCA
TCTTCGGCATCCTTACAGTCCTCTTCTTGATCCTCCTTCAAAAAGAGCAC
GCCTCCCGTTGCTATGTTCTGCCCCTACAAAAGCTCGCAGCCCGTCTCTT
CATCCTGGCACCTACGTACAGCATTTTCCTTTTGCTCACTGGCTACGTCA
CACGCGGCAAACCCTTCTGGGACATATGTATGGCTGGCTTGGATGGTTAC
GCTCTCTTCAGTTTCTTTGGCCTGATGGTACTCGGGGCCGGAGGTGAGGA
GCAAGTCATGCATCGCCTGGCATCGGATTTACCACAAATGGAGGGGAATT
CCACCGCGGTGAATGGGGCCGGCACCAACGGAGCTAGCGGAGGTAAATTG
CAATTTTCCATTTGCTTGTGTTTGCCGATGCGGTTCAATAGCGCGCGGAG
CGTTTATACATTCCTAAAGGCCTCAGTCATGCAGGCGATGGTCTCACGGC
CTGTCTTTCTGGCGGCGAGTTCGATTTCCAAGCATTTCGCCCACGGACAG
CTGGCCAACTTGGGGGAGCGCGGCTTCAGACTGTTAAGTTTATTGGCCCT
CATTTATGCGGTTATGTCGATTGGAAGGACTTATCATCTAGTTTATCAGC
AGATTTGGCCGGAATTCAACCCCGTTGCTGCATTTATGGTTGTGAAAGGC
TTCATTCTTCTTGTCGCCGTCCAGGACTTCGTCATTGCAATGATCTTCTC
CGCAAGAGACCCTTTCTATGAGGAACAGAGCACCAGGGCTGCACTTCAAG
CATATAGCCTGGTTGTGTCAATACAAGCCTTCCTCTTCCTCTTTATCGCG
CGGTTTTACCTACAGCCTAGCATATTTCAGAGCTACAGTCCGCAATCCTC
CTTGGCCATGACGATCTCCTTCTGCAACTTCATGAGGGAGACGTATTCAT
TCTGGACCGTTTTCGGCGGGGACATGCCTCCCAGGATTGACGAGAAGACA
TCGACTCGAACATCATCGACGCTCTTATTGCGGAGGGACCTGGCCGGTGG
CTTGGAGATGTCCGGGGGAAACCAGATTGAATAAAAATGACACCTACGTC
TGTGACCTGACAAGCATGGTATTGTATAGTAGTCGGTCCAGCTCAGGTAG
ACAAGATGATGAACACCTTACATGTGTTTGATATACGAATATAGGCACAG
ATACAGATTATCTCTCAACCGTCTCCTCGTATCGTCATGTCTCTGTCTCT
GCGATGGACGTCTTGTAGACATGAGACGGGGAGTGCGTGCCACGTACTGA
ATAATTTGTCCCCTGCTTTTGTTACATACGTTTTGTCATATATAGCAATA
AGGATATCAGTACAAATGAAAATTTGCTATCACAGCTGCTGTCATCTCGT
CCCAGCCGGTCGCTATACTGTTCGTTATTTAACCTATGGGCATATACACA
AATGAGAAAGCGGACTAGCGTAATATGTGGCAGCCATGTTTATCTCGACG
TTTTTGAAGAATCCCTCAGCGCACGTACCCTCACCCTCACCTGCCGGGCC
ATTGACCGAGCATCATAAGTACATGAATTCATACATACAGTATGAACATA
AACTTGCACTGACACTCCTCCTAGATCTATCTCCCGTTCAAACCCAACGG
TTTTCACAGCCGTCGATCCTCCCAGACTTTTTGTCGGGGAATGTAAGTAG
CTGCTCGAAACGATAAAGAAAAGCGAGGAATGACTATGTTGATTTTTGCA
GTGTGCTCCACAGTCATCAGGCACCATTTCTGGAGCCACGCGATTGCTGT
GCGTTATTTTTGACATGGTGTAGCTTTTGGTGTGAGGAGGGATGCCATAT
CATACCTTTCCCCAAAGCACAACAGCAGCAGAGACAGCAGCACGAGGATT
AAGA
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protein sequence of jgi.p|Nanoce1779_2|574698

>mRNA_931-protein ID=mRNA_931-protein|Name=jgi.p|Nanoce1779_2|574698|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MAYSVEKGGPITPNIIFGILTVLFLILLQKEHASRCYVLPLQKLAARLFI
LAPTYSIFLLLTGYVTRGKPFWDICMAGLDGYALFSFFGLMVLGAGGEEQ
VMHRLASDLPQMEGNSTAVNGAGTNGASGGKLQFSICLCLPMRFNSARSV
YTFLKASVMQAMVSRPVFLAASSISKHFAHGQLANLGERGFRLLSLLALI
YAVMSIGRTYHLVYQQIWPEFNPVAAFMVVKGFILLVAVQDFVIAMIFSA
RDPFYEEQSTRAALQAYSLVVSIQAFLFLFIARFYLQPSIFQSYSPQSSL
AMTISFCNFMRETYSFWTVFGGDMPPRIDEKTSTRTSSTLLLRRDLAGGL
EMSGGNQI
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mRNA from alignment at scaffold_2:780110..782413-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_931 ID=mRNA_931|Name=jgi.p|Nanoce1779_2|574698|organism=Nannochloropsis oceanica|type=mRNA|length=2304bp|location=Sequence derived from alignment at scaffold_2:780110..782413- (Nannochloropsis oceanica)
GCTCGAATGCTTTCGTTAGTTATCACTATCATGGGAACCATGTCGAAACA
AAATTGGAAAATGTTGCGTTTCTCCCTCGCCCCCCTGAATGTACAGTACA
TGCCAATAGCGTCCTGAATGCGCCATTCCGGCCCCTTTGCAATGCCAAAT
CACATGCGCATGATCAAGCCAAAGCGGACCGTAGCCATGTGGCCTGTTGC
ACGGCCATACCCCCCGTGTGCTGGCAATTATCCCCGGGCCAGATCGTCTG
CTTTGACGTACATCCCGTGCACGAGTGCCACAACATATTTACTGCTACGA
ATCCACCCCTTGCAACCACATTGCACAGGCTCAAGACAAAGTAGAAGCTC
GCCTGAGGCACGGCTACTCCTTGAACCGCAGTGCAATCGTTCTGCGCTTC
GACCATGGCCTACTCTGTGGAAAAGGGCGGCCCTATCACCCCGAACATCA
TCTTCGGCATCCTTACAGTCCTCTTCTTGATCCTCCTTCAAAAAGAGCAC
GCCTCCCGTTGCTATGTTCTGCCCCTACAAAAGCTCGCAGCCCGTCTCTT
CATCCTGGCACCTACGTACAGCATTTTCCTTTTGCTCACTGGCTACGTCA
CACGCGGCAAACCCTTCTGGGACATATGTATGGCTGGCTTGGATGGTTAC
GCTCTCTTCAGTTTCTTTGGCCTGATGGTACTCGGGGCCGGAGGTGAGGA
GCAAGTCATGCATCGCCTGGCATCGGATTTACCACAAATGGAGGGGAATT
CCACCGCGGTGAATGGGGCCGGCACCAACGGAGCTAGCGGAGGTAAATTG
CAATTTTCCATTTGCTTGTGTTTGCCGATGCGGTTCAATAGCGCGCGGAG
CGTTTATACATTCCTAAAGGCCTCAGTCATGCAGGCGATGGTCTCACGGC
CTGTCTTTCTGGCGGCGAGTTCGATTTCCAAGCATTTCGCCCACGGACAG
CTGGCCAACTTGGGGGAGCGCGGCTTCAGACTGTTAAGTTTATTGGCCCT
CATTTATGCGGTTATGTCGATTGGAAGGACTTATCATCTAGTTTATCAGC
AGATTTGGCCGGAATTCAACCCCGTTGCTGCATTTATGGTTGTGAAAGGC
TTCATTCTTCTTGTCGCCGTCCAGGACTTCGTCATTGCAATGATCTTCTC
CGCAAGAGACCCTTTCTATGAGGAACAGAGCACCAGGGCTGCACTTCAAG
CATATAGCCTGGTTGTGTCAATACAAGCCTTCCTCTTCCTCTTTATCGCG
CGGTTTTACCTACAGCCTAGCATATTTCAGAGCTACAGTCCGCAATCCTC
CTTGGCCATGACGATCTCCTTCTGCAACTTCATGAGGGAGACGTATTCAT
TCTGGACCGTTTTCGGCGGGGACATGCCTCCCAGGATTGACGAGAAGACA
TCGACTCGAACATCATCGACGCTCTTATTGCGGAGGGACCTGGCCGGTGG
CTTGGAGATGTCCGGGGGAAACCAGATTGAATAAAAATGACACCTACGTC
TGTGACCTGACAAGCATGGTATTGTATAGTAGTCGGTCCAGCTCAGGTAG
ACAAGATGATGAACACCTTACATGTGTTTGATATACGAATATAGGCACAG
ATACAGATTATCTCTCAACCGTCTCCTCGTATCGTCATGTCTCTGTCTCT
GCGATGGACGTCTTGTAGACATGAGACGGGGAGTGCGTGCCACGTACTGA
ATAATTTGTCCCCTGCTTTTGTTACATACGTTTTGTCATATATAGCAATA
AGGATATCAGTACAAATGAAAATTTGCTATCACAGCTGCTGTCATCTCGT
CCCAGCCGGTCGCTATACTGTTCGTTATTTAACCTATGGGCATATACACA
AATGAGAAAGCGGACTAGCGTAATATGTGGCAGCCATGTTTATCTCGACG
TTTTTGAAGAATCCCTCAGCGCACGTACCCTCACCCTCACCTGCCGGGCC
ATTGACCGAGCATCATAAGTACATGAATTCATACATACAGTATGAACATA
AACTTGCACTGACACTCCTCCTAGATCTATCTCCCGTTCAAACCCAACGG
TTTTCACAGCCGTCGATCCTCCCAGACTTTTTGTCGGGGAATGTAAGTAG
CTGCTCGAAACGATAAAGAAAAGCGAGGAATGACTATGTTGATTTTTGCA
GTGTGCTCCACAGTCATCAGGCACCATTTCTGGAGCCACGCGATTGCTGT
GCGTTATTTTTGACATGGTGTAGCTTTTGGTGTGAGGAGGGATGCCATAT
CATACCTTTCCCCAAAGCACAACAGCAGCAGAGACAGCAGCACGAGGATT
AAGA
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Coding sequence (CDS) from alignment at scaffold_2:780110..782413-

>mRNA_931 ID=mRNA_931|Name=jgi.p|Nanoce1779_2|574698|organism=Nannochloropsis oceanica|type=CDS|length=1076bp|location=Sequence derived from alignment at scaffold_2:780110..782413- (Nannochloropsis oceanica)
ATGGCCTACTCTGTGGAAAAGGGCGGCCCTATCACCCCGAACATCATCTT
CGGCATCCTTACAGTCCTCTTCTTGATCCTCCTTCAAAAAGAGCACGCCT
CCCGTTGCTATGTTCTGCCCCTACAAAAGCTCGCAGCCCGTCTCTTCATC
CTGGCACCTACGTACAGCATTTTCCTTTTGCTCACTGGCTACGTCACACG
CGGCAAACCCTTCTGGGACATATGTATGGCTGGCTTGGATGGTTACGCTC
TCTTCAGTTTCTTTGGCCTGATGGTACTCGGGGCCGGAGGTGAGGAGCAA
GTCATGCATCGCCTGGCATCGGATTTACCACAAATGGAGGGGAATTCCAC
CGCGGTGAATGGGGCCGGCACCAACGGAGCTAGCGGAGGTAAATTGCAAT
TTTCCATTTGCTTGTGTTTGCCGATGCGGTTCAATAGCGCGCGGAGCGTT
TATACATTCCTAAAGGCCTCAGTCATGCAGGCGATGGTCTCACGGCCTGT
CTTTCTGGCGGCGAGTTCGATTTCCAAGCATTTCGCCCACGGACAGCTGG
CCAACTTGGGGGAGCGCGGCTTCAGACTGTTAAGTTTATTGGCCCTCATT
TATGCGGTTATGTCGATTGGAAGGACTTATCATCTAGTTTATCAGCAGAT
TTGGCCGGAATTCAACCCCGTTGCTGCATTTATGGTTGTGAAAGGCTTCA
TTCTTCTTGTCGCCGTCCAGGACTTCGTCATTGCAATGATCTTCTCCGCA
AGAGACCCTTTCTATGAGGAACAGAGCACCAGGGCTGCACTTCAAGCATA
TAGCCTGGTTGTGTCAATACAAGCCTTCCTCTTCCTCTTTATCGCGCGGT
TTTACCTACAGCCTAGCATATTTCAGAGCTACAGTCCGCAATCCTCCTTG
GCCATGACGATCTCCTTCTGCAACTTCATGAGGGAGACGTATTCATTCTG
GACCGTTTTCGGCGGGGACATGCCTCCCAGGATTGACGAGAAGACATCGA
CTCGAACATCATCGACGCTCTTATTGCGGAGGGACCTGGCCGGTGGCTTG
GAGATGTCCGGGGGAAACCAGATTGA
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Synonyms
Publications