jgi.p|Nanoce1779_2|606327, mRNA_9307 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606327
Unique Name	mRNA_9307
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1817
Alignment location	scaffold_35:38669..40485 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606413
Track	FilteredModels2
ProteinId	606327

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:38669..40485 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606327	gene_9307	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606327	mRNA_9307-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9307	CDS_9307	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:38669..40485+
coding sequence from alignment at scaffold_35:38669..40485+

mRNA sequence

>mRNA_9307 ID=mRNA_9307|Name=jgi.p|Nanoce1779_2|606327|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp
TGACAATTAAATCACCTGTGTTGAGTCATGACAGCACTTTGCCTCTGTAT
CCTCTTGGCAATATTGGTGAACAGGCAAGGCAAATGGTGACTTTTACTTT
TCGACGTCCCCTCACGCACTCTACACGGCTCAAAATCTTCGTCACAGCGA
GCTGCACGGCGGGCGGCCCAAGTAGAATCGTATCCTCCCGGCCGTGCGCA
TCATCCATGGCACAACTCCCACAAATGCAAATAAGCAGCTATGCAGTTCA
CGGTGGGGAGGAGCAGGAGGTGGAACCCGAGCTGGTCTCCACCATCGACT
CCGCCGCTACTCTTCCCCGCTCCTTCATGCCTGCCCTCCCAAACTCTCCT
CCACCTTTACATACACCATCGATCAGTGCTTTCAACCCATACGCCGCCCC
AGGGCGCGGTTACCGGCATTCAGTTACACAGCCCCATGCTGTCAGCGCTT
GCCCTGGGTCTAGCTCGTCTTCACTGCCGGTAATGATGCCAGTCAGCGTC
CGCCCCAGTAGCGCCCCACCTCCTACAGCTTCTTCTCACCATTACCACCT
CTCCCAACAATCGCGTGTGCGAAAAAGTCGCTCCTTGCGGAGGACAGGGT
CACATGGTTCTATTGCCATGTCATTGGTCTTGGCCGGTGGAGGAGCAATG
GGTCGAGGGGCGTCATATGAAAGTTTGACTACAGTGGCAGCCGCAGCCCG
GGCGGCCTCGGAAGCGATCATTGGGAACGGAAATGAGGGGGAGGAGGAGG
AGAAGGAGGAGAAAGGAGAAGAAGAAGAGGATGAAAGGGAGGAGAAGGAG
AAGGAGAAGGACGACAATGAGGAGAAAGCGGCTGACCTGGAGAGGAAAGA
GGGGGCATTCCTCCCTCCTCCCTCCTCCTCGCCCACCAAGACTACTACAG
CCTATAAAAGGTCTCTTTTACACAATGGAACCATCCACCATCACAAGCGG
ACCTTGACGAAACTGGGTCCAAATCAACTCCGCCTGGTCTGCTTTGGGGG
GTACGCTCTTGTCCTCCTCTCCATGTACGGCATTTCTCCCTTTTTTCAAA
AAGACGCACAAAGCCGCATTCACATGGCCCCATCCCTCGCGGGACTCGTC
TTTTCCCTCTCGGCCTTGACCTCCATGCTCGTTACCCCCCTCGCGGCCCA
TCTTTGTAAATTCCTCGGTCGTTTTCAAACCTTATTCCTCGGGTATCTGA
CTTCCCTCACCGCCAACGCCGGCTTCAGCTTTTCAACAAGCACAGCATAT
ATGACCGTCTTTCGGGGCTTCCAGGGGGTGGCCATGGGTCTGGTTGCCGT
GGCATCTATGACCCTCCTTATTGCGGGATCGGACAACATCGTCAGGGATA
TGGGCCTGCAGGAGATGACGATTTCACTCATTCTGATCGTCGCGCCCATC
CTGGGAGGGACCTTTTACGCGTATTTGCCGGGGGCTGAGTGGGCGTACCT
TGCCATGAGTGCGCCATTGGTGGTGGTTGTGATATGTCTGGCGGTCTTTC
TAGGGGAAAGGCAGAGGAAGCAGCGGCAGGAGTTGCAACAGGAGTTGCAG
CAGCAGTTGCAACAGCGGCAGCAGCAGCGGCAACAGCGAGCGCGATTGCC
GTTGAGGGCGATGGGAGAGGGTGAGGGAGAGGTAGGGAAGAAGGAGTGGG
GGGATGAAGCGCGGGGGACGACGGCGACATCCTCGTTCTCGACCTTACCC
TCGGGAGTGGACTTGAACGAGGAGATAAAGGAGGGTGATAGGGAGGGAGG
GAGGGAGGGAGGCGTGCCACGTGTTGACAACGGTGGGAAAGACGAGAAAG
ATCTACTAGAACAACGA

protein sequence of jgi.p|Nanoce1779_2|606327

>mRNA_9307-protein ID=mRNA_9307-protein|Name=jgi.p|Nanoce1779_2|606327|organism=Nannochloropsis oceanica|type=polypeptide|length=564bp
MVTFTFRRPLTHSTRLKIFVTASCTAGGPSRIVSSRPCASSMAQLPQMQI
SSYAVHGGEEQEVEPELVSTIDSAATLPRSFMPALPNSPPPLHTPSISAF
NPYAAPGRGYRHSVTQPHAVSACPGSSSSSLPVMMPVSVRPSSAPPPTAS
SHHYHLSQQSRVRKSRSLRRTGSHGSIAMSLVLAGGGAMGRGASYESLTT
VAAAARAASEAIIGNGNEGEEEEKEEKGEEEEDEREEKEKEKDDNEEKAA
DLERKEGAFLPPPSSSPTKTTTAYKRSLLHNGTIHHHKRTLTKLGPNQLR
LVCFGGYALVLLSMYGISPFFQKDAQSRIHMAPSLAGLVFSLSALTSMLV
TPLAAHLCKFLGRFQTLFLGYLTSLTANAGFSFSTSTAYMTVFRGFQGVA
MGLVAVASMTLLIAGSDNIVRDMGLQEMTISLILIVAPILGGTFYAYLPG
AEWAYLAMSAPLVVVVICLAVFLGERQRKQRQELQQELQQQLQQRQQQRQ
QRARLPLRAMGEGEGEVGKKEWGDEARGTTATSSFSTLPSGVDLNEEIKE
GDREGGREGGVPRV

mRNA from alignment at scaffold_35:38669..40485+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9307 ID=mRNA_9307|Name=jgi.p|Nanoce1779_2|606327|organism=Nannochloropsis oceanica|type=mRNA|length=1817bp|location=Sequence derived from alignment at scaffold_35:38669..40485+ (Nannochloropsis oceanica)
TGACAATTAAATCACCTGTGTTGAGTCATGACAGCACTTTGCCTCTGTAT
CCTCTTGGCAATATTGGTGAACAGGCAAGGCAAATGGTGACTTTTACTTT
TCGACGTCCCCTCACGCACTCTACACGGCTCAAAATCTTCGTCACAGCGA
GCTGCACGGCGGGCGGCCCAAGTAGAATCGTATCCTCCCGGCCGTGCGCA
TCATCCATGGCACAACTCCCACAAATGCAAATAAGCAGCTATGCAGTTCA
CGGTGGGGAGGAGCAGGAGGTGGAACCCGAGCTGGTCTCCACCATCGACT
CCGCCGCTACTCTTCCCCGCTCCTTCATGCCTGCCCTCCCAAACTCTCCT
CCACCTTTACATACACCATCGATCAGTGCTTTCAACCCATACGCCGCCCC
AGGGCGCGGTTACCGGCATTCAGTTACACAGCCCCATGCTGTCAGCGCTT
GCCCTGGGTCTAGCTCGTCTTCACTGCCGGTAATGATGCCAGTCAGCGTC
CGCCCCAGTAGCGCCCCACCTCCTACAGCTTCTTCTCACCATTACCACCT
CTCCCAACAATCGCGTGTGCGAAAAAGTCGCTCCTTGCGGAGGACAGGGT
CACATGGTTCTATTGCCATGTCATTGGTCTTGGCCGGTGGAGGAGCAATG
GGTCGAGGGGCGTCATATGAAAGTTTGACTACAGTGGCAGCCGCAGCCCG
GGCGGCCTCGGAAGCGATCATTGGGAACGGAAATGAGGGGGAGGAGGAGG
AGAAGGAGGAGAAAGGAGAAGAAGAAGAGGATGAAAGGGAGGAGAAGGAG
AAGGAGAAGGACGACAATGAGGAGAAAGCGGCTGACCTGGAGAGGAAAGA
GGGGGCATTCCTCCCTCCTCCCTCCTCCTCGCCCACCAAGACTACTACAG
CCTATAAAAGGTCTCTTTTACACAATGGAACCATCCACCATCACAAGCGG
ACCTTGACGAAACTGGGTCCAAATCAACTCCGCCTGGTCTGCTTTGGGGG
GTACGCTCTTGTCCTCCTCTCCATGTACGGCATTTCTCCCTTTTTTCAAA
AAGACGCACAAAGCCGCATTCACATGGCCCCATCCCTCGCGGGACTCGTC
TTTTCCCTCTCGGCCTTGACCTCCATGCTCGTTACCCCCCTCGCGGCCCA
TCTTTGTAAATTCCTCGGTCGTTTTCAAACCTTATTCCTCGGGTATCTGA
CTTCCCTCACCGCCAACGCCGGCTTCAGCTTTTCAACAAGCACAGCATAT
ATGACCGTCTTTCGGGGCTTCCAGGGGGTGGCCATGGGTCTGGTTGCCGT
GGCATCTATGACCCTCCTTATTGCGGGATCGGACAACATCGTCAGGGATA
TGGGCCTGCAGGAGATGACGATTTCACTCATTCTGATCGTCGCGCCCATC
CTGGGAGGGACCTTTTACGCGTATTTGCCGGGGGCTGAGTGGGCGTACCT
TGCCATGAGTGCGCCATTGGTGGTGGTTGTGATATGTCTGGCGGTCTTTC
TAGGGGAAAGGCAGAGGAAGCAGCGGCAGGAGTTGCAACAGGAGTTGCAG
CAGCAGTTGCAACAGCGGCAGCAGCAGCGGCAACAGCGAGCGCGATTGCC
GTTGAGGGCGATGGGAGAGGGTGAGGGAGAGGTAGGGAAGAAGGAGTGGG
GGGATGAAGCGCGGGGGACGACGGCGACATCCTCGTTCTCGACCTTACCC
TCGGGAGTGGACTTGAACGAGGAGATAAAGGAGGGTGATAGGGAGGGAGG
GAGGGAGGGAGGCGTGCCACGTGTTGACAACGGTGGGAAAGACGAGAAAG
ATCTACTAGAACAACGA

Coding sequence (CDS) from alignment at scaffold_35:38669..40485+

>mRNA_9307 ID=mRNA_9307|Name=jgi.p|Nanoce1779_2|606327|organism=Nannochloropsis oceanica|type=CDS|length=1694bp|location=Sequence derived from alignment at scaffold_35:38669..40485+ (Nannochloropsis oceanica)
ATGGTGACTTTTACTTTTCGACGTCCCCTCACGCACTCTACACGGCTCAA
AATCTTCGTCACAGCGAGCTGCACGGCGGGCGGCCCAAGTAGAATCGTAT
CCTCCCGGCCGTGCGCATCATCCATGGCACAACTCCCACAAATGCAAATA
AGCAGCTATGCAGTTCACGGTGGGGAGGAGCAGGAGGTGGAACCCGAGCT
GGTCTCCACCATCGACTCCGCCGCTACTCTTCCCCGCTCCTTCATGCCTG
CCCTCCCAAACTCTCCTCCACCTTTACATACACCATCGATCAGTGCTTTC
AACCCATACGCCGCCCCAGGGCGCGGTTACCGGCATTCAGTTACACAGCC
CCATGCTGTCAGCGCTTGCCCTGGGTCTAGCTCGTCTTCACTGCCGGTAA
TGATGCCAGTCAGCGTCCGCCCCAGTAGCGCCCCACCTCCTACAGCTTCT
TCTCACCATTACCACCTCTCCCAACAATCGCGTGTGCGAAAAAGTCGCTC
CTTGCGGAGGACAGGGTCACATGGTTCTATTGCCATGTCATTGGTCTTGG
CCGGTGGAGGAGCAATGGGTCGAGGGGCGTCATATGAAAGTTTGACTACA
GTGGCAGCCGCAGCCCGGGCGGCCTCGGAAGCGATCATTGGGAACGGAAA
TGAGGGGGAGGAGGAGGAGAAGGAGGAGAAAGGAGAAGAAGAAGAGGATG
AAAGGGAGGAGAAGGAGAAGGAGAAGGACGACAATGAGGAGAAAGCGGCT
GACCTGGAGAGGAAAGAGGGGGCATTCCTCCCTCCTCCCTCCTCCTCGCC
CACCAAGACTACTACAGCCTATAAAAGGTCTCTTTTACACAATGGAACCA
TCCACCATCACAAGCGGACCTTGACGAAACTGGGTCCAAATCAACTCCGC
CTGGTCTGCTTTGGGGGGTACGCTCTTGTCCTCCTCTCCATGTACGGCAT
TTCTCCCTTTTTTCAAAAAGACGCACAAAGCCGCATTCACATGGCCCCAT
CCCTCGCGGGACTCGTCTTTTCCCTCTCGGCCTTGACCTCCATGCTCGTT
ACCCCCCTCGCGGCCCATCTTTGTAAATTCCTCGGTCGTTTTCAAACCTT
ATTCCTCGGGTATCTGACTTCCCTCACCGCCAACGCCGGCTTCAGCTTTT
CAACAAGCACAGCATATATGACCGTCTTTCGGGGCTTCCAGGGGGTGGCC
ATGGGTCTGGTTGCCGTGGCATCTATGACCCTCCTTATTGCGGGATCGGA
CAACATCGTCAGGGATATGGGCCTGCAGGAGATGACGATTTCACTCATTC
TGATCGTCGCGCCCATCCTGGGAGGGACCTTTTACGCGTATTTGCCGGGG
GCTGAGTGGGCGTACCTTGCCATGAGTGCGCCATTGGTGGTGGTTGTGAT
ATGTCTGGCGGTCTTTCTAGGGGAAAGGCAGAGGAAGCAGCGGCAGGAGT
TGCAACAGGAGTTGCAGCAGCAGTTGCAACAGCGGCAGCAGCAGCGGCAA
CAGCGAGCGCGATTGCCGTTGAGGGCGATGGGAGAGGGTGAGGGAGAGGT
AGGGAAGAAGGAGTGGGGGGATGAAGCGCGGGGGACGACGGCGACATCCT
CGTTCTCGACCTTACCCTCGGGAGTGGACTTGAACGAGGAGATAAAGGAG
GGTGATAGGGAGGGAGGGAGGGAGGGAGGCGTGCCACGTGTTGA

Synonyms

Publications