jgi.p|Nanoce1779_2|606321, mRNA_9305 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606321
Unique NamemRNA_9305
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length877
Alignment locationscaffold_35:35889..36765 -

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Properties
Property NameValue
TranscriptId606407
TrackFilteredModels2
ProteinId606321
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:35889..36765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606321gene_9305Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606321mRNA_9305-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9305CDS_9305Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9305 ID=mRNA_9305|Name=jgi.p|Nanoce1779_2|606321|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
CTCCCGCCCTATCTCGTCCCCTCTTCCCATCTAAGATCATTTTACGTATT
CTCCTGCCCATGCTTCTGTCATCTTATTCCATCCCTTGCTCCATTCCTCC
ATACCTTGCTCCTTCTTCAGGAGAACATGTTCAAACTGTTGTTGCGTGTA
GACCTAATCGGCATCGCACTCTTGATCTGGTTTGAAAGGAGGGGAGGGAG
GGAGGGAGGAAGGAAGGAAGGGAGGGAGGCGGGGAGGGATAGATTGATGG
GGTATGTATTGATGTCAGTGTAAGGGGTTCTAGCTCGGGCATTTTGAGTC
GAAGATTGTTTCATCGCCGCTCTCCTTCCCTCCCTTCCGCCCTACCTCCC
TCCCTTCCGCCCTCCCCCTTCCTCCCTCCTCCATCCCAGGGGCTCCTACG
TTCCCGGTATCCACTACGCTTTCGCCTGCTTTCCTCGCTGGCAGCGTGTC
TACCACTTTCTGACCCTCCTCCTCCTCCTCCTGGGTTTGGGCGGGGCGGC
GCTCACCGACACGCACTGTCCTCGCCAGTCCCTCGTGCGCACTGGCACAT
TCGCCCTACTCGTGACCTTCGGCCTCGTCCCTTCCCTCCATTGGTGCATG
CTCGTGCCTGCCCATGTCCGAGCAATCTTTCTGGATAACTTAATCGGAAT
GTTCTCGTCCTATTCCTTAGGATTTTGCTTGTGGGCCTCCCGTTTCCCTG
AACGATTCTTCCCTCAGACGCCGCTGTTGGGGCTGTGGTTCTCAAGTCAT
CAGCTGTGGCACATGTGTATCTTTATGGCGGTCAAGATCTGGTTGGCGGG
GATCTTGGAGATGCACATGGCCTTGCATGAGATGGGGTGTGAGCTGTTGA
GCTAGAGAGGGTGCGGAGTGAGGCAGG
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protein sequence of jgi.p|Nanoce1779_2|606321

>mRNA_9305-protein ID=mRNA_9305-protein|Name=jgi.p|Nanoce1779_2|606321|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MLVPAHVRAIFLDNLIGMFSSYSLGFCLWASRFPERFFPQTPLLGLWFSS
HQLWHMCIFMAVKIWLAGILEMHMALHEMGCELL
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mRNA from alignment at scaffold_35:35889..36765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9305 ID=mRNA_9305|Name=jgi.p|Nanoce1779_2|606321|organism=Nannochloropsis oceanica|type=mRNA|length=877bp|location=Sequence derived from alignment at scaffold_35:35889..36765- (Nannochloropsis oceanica)
CTCCCGCCCTATCTCGTCCCCTCTTCCCATCTAAGATCATTTTACGTATT
CTCCTGCCCATGCTTCTGTCATCTTATTCCATCCCTTGCTCCATTCCTCC
ATACCTTGCTCCTTCTTCAGGAGAACATGTTCAAACTGTTGTTGCGTGTA
GACCTAATCGGCATCGCACTCTTGATCTGGTTTGAAAGGAGGGGAGGGAG
GGAGGGAGGAAGGAAGGAAGGGAGGGAGGCGGGGAGGGATAGATTGATGG
GGTATGTATTGATGTCAGTGTAAGGGGTTCTAGCTCGGGCATTTTGAGTC
GAAGATTGTTTCATCGCCGCTCTCCTTCCCTCCCTTCCGCCCTACCTCCC
TCCCTTCCGCCCTCCCCCTTCCTCCCTCCTCCATCCCAGGGGCTCCTACG
TTCCCGGTATCCACTACGCTTTCGCCTGCTTTCCTCGCTGGCAGCGTGTC
TACCACTTTCTGACCCTCCTCCTCCTCCTCCTGGGTTTGGGCGGGGCGGC
GCTCACCGACACGCACTGTCCTCGCCAGTCCCTCGTGCGCACTGGCACAT
TCGCCCTACTCGTGACCTTCGGCCTCGTCCCTTCCCTCCATTGGTGCATG
CTCGTGCCTGCCCATGTCCGAGCAATCTTTCTGGATAACTTAATCGGAAT
GTTCTCGTCCTATTCCTTAGGATTTTGCTTGTGGGCCTCCCGTTTCCCTG
AACGATTCTTCCCTCAGACGCCGCTGTTGGGGCTGTGGTTCTCAAGTCAT
CAGCTGTGGCACATGTGTATCTTTATGGCGGTCAAGATCTGGTTGGCGGG
GATCTTGGAGATGCACATGGCCTTGCATGAGATGGGGTGTGAGCTGTTGA
GCTAGAGAGGGTGCGGAGTGAGGCAGG
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Coding sequence (CDS) from alignment at scaffold_35:35889..36765-

>mRNA_9305 ID=mRNA_9305|Name=jgi.p|Nanoce1779_2|606321|organism=Nannochloropsis oceanica|type=CDS|length=253bp|location=Sequence derived from alignment at scaffold_35:35889..36765- (Nannochloropsis oceanica)
ATGCTCGTGCCTGCCCATGTCCGAGCAATCTTTCTGGATAACTTAATCGG
AATGTTCTCGTCCTATTCCTTAGGATTTTGCTTGTGGGCCTCCCGTTTCC
CTGAACGATTCTTCCCTCAGACGCCGCTGTTGGGGCTGTGGTTCTCAAGT
CATCAGCTGTGGCACATGTGTATCTTTATGGCGGTCAAGATCTGGTTGGC
GGGGATCTTGGAGATGCACATGGCCTTGCATGAGATGGGGTGTGAGCTGT
TGA
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Synonyms
Publications