jgi.p|Nanoce1779_2|606319, mRNA_9304 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606319
Unique NamemRNA_9304
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length785
Alignment locationscaffold_35:33969..35085 +

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Properties
Property NameValue
TranscriptId606405
TrackFilteredModels2
ProteinId606319
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:33969..35085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606319gene_9304Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606319mRNA_9304-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9304CDS_9304Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9304 ID=mRNA_9304|Name=jgi.p|Nanoce1779_2|606319|organism=Nannochloropsis oceanica|type=mRNA|length=785bp
AGCGCCTCAACCAGCGTATATTATGCGTTCCCTATTCCTCGTCGCCGCTG
TTCTCCTCGTCTCCTTGCAAGCCACTCTTGGCTTTCTCCTCCCCTTCCCC
TCCACCCCTCGCTCCCTCTCCTCCCCCCTTCGCTCCTCCATGGCCCCCGG
CGAGGAGGCTGCGGAACGGGCAGCGGCCACCGATAAAATCAAGTCGATGG
TAGCCGACAACAAGGTCATGTTGTTCATGAAGGGCTCAAAGCTGTTCCCT
CAGTGTGGATTCTCCAACACTGCGGTCTCTATTCTTCGGGCCGTCGATGC
CGAGTTTGAGACGTTTGATGTACTGAGCGACTCATTGGTGCGAGAAGAGA
TCAAGACATTTAGCGCCTGGCCCACCATTCCCCAGTGCTTTATCAACGGA
GAATTTGTGGGGGGAAGTGACATTCTGCTGGAGATGTACGAGAGTGGGGA
GCTAGAAAAGACTTTGGCTGAATTGAAAAAGTGATCTGAATTTCCGTTAG
AAAAGAAAAAACATCTAAATTAGACAAAGGGCGCGAGGGTGTGGTCTGCT
GCTAGAGAAGGAAGTGGAATAGCGCTAGCACACATAAATGAAAGTAGGGA
GCAGCGAGAGGGAGGGTAGTGGTAGGAGTTTGGGAAAGGAAAGAAAGGAG
GAGGAAGACAAAGCACCAGCCACTCTCTCCATCAACAGGCAACATTCACA
AGGGTTCCAACAGAAATTCAGAAGTGAATCGACACAGTGAAAACTCACTC
AAAATCAAAAGAGGCCTGAAAAACGGCATCACACA
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protein sequence of jgi.p|Nanoce1779_2|606319

>mRNA_9304-protein ID=mRNA_9304-protein|Name=jgi.p|Nanoce1779_2|606319|organism=Nannochloropsis oceanica|type=polypeptide|length=154bp
MRSLFLVAAVLLVSLQATLGFLLPFPSTPRSLSSPLRSSMAPGEEAAERA
AATDKIKSMVADNKVMLFMKGSKLFPQCGFSNTAVSILRAVDAEFETFDV
LSDSLVREEIKTFSAWPTIPQCFINGEFVGGSDILLEMYESGELEKTLAE
LKK*
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mRNA from alignment at scaffold_35:33969..35085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9304 ID=mRNA_9304|Name=jgi.p|Nanoce1779_2|606319|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_35:33969..35085+ (Nannochloropsis oceanica)
AGCGCCTCAACCAGCGTATATTATGCGTTCCCTATTCCTCGTCGCCGCTG
TTCTCCTCGTCTCCTTGCAAGCCACTCTTGGCTTTCTCCTCCCCTTCCCC
TCCACCCCTCGCTCCCTCTCCTCCCCCCTTCGCTCCTCCATGGCCCCCGG
CGAGGAGGCTGCGGAACGGGCAGCGGCCACCGATAAAATCAAGTCGATGG
TAGCCGACAACAAGGTCATGTTGTTCATGAAGGGCTCAAAGCTGTTCCCT
CAGTGTGGATTCTCCAACACTGCGGTCTCTATTCTTCGGGCCGTCGATGC
CGAGTTTGAGACGTTTGATGTACTGAGCGGTGCGTATTACGGAATAGGGG
ATGGAGAGGAAGGGAGGGAGAGAATGGTTGATCTCTAAAAATGAAAAAGG
GAAATCATTCAATATAGCAACACCATGCATCCGGTCACGCGTACGCAGAC
ATACACACGTATGAAAAAAAAAAACATGATATTTAACCACACACTTGTAT
CCACATCCACACACTCTCTCACATATACACGCACAACCAAACAGACTCAT
TGGTGCGAGAAGAGATCAAGACATTTAGCGCCTGGCCCACCATTCCCCAG
GTGGGTAAGATTTTATCGTGGCTTCGCGCGCGTCTCTTTTTCTCTCCTCC
TTTGCTCACCCTCCCTCCTTCCTTACCTCTCTCCTTCCTTCTCTCTCCAT
CCTACCCTTTCTACCAGTGCTTTATCAACGGAGAATTTGTGGGGGGAAGT
GACATTCTGCTGGAGATGTACGAGAGTGGGGAGCTAGAAAAGACTTTGGC
TGAATTGAAAAAGTGATCTGAATTTCCGTTAGAAAAGAAAAAACATCTAA
ATTAGACAAAGGGCGCGAGGGTGTGGTCTGCTGCTAGAGAAGGAAGTGGA
ATAGCGCTAGCACACATAAATGAAAGTAGGGAGCAGCGAGAGGGAGGGTA
GTGGTAGGAGTTTGGGAAAGGAAAGAAAGGAGGAGGAAGACAAAGCACCA
GCCACTCTCTCCATCAACAGGCAACATTCACAAGGGTTCCAACAGAAATT
CAGAAGTGAATCGACACAGTGAAAACTCACTCAAAATCAAAAGAGGCCTG
AAAAACGGCATCACACA
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Coding sequence (CDS) from alignment at scaffold_35:33969..35085+

>mRNA_9304 ID=mRNA_9304|Name=jgi.p|Nanoce1779_2|606319|organism=Nannochloropsis oceanica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_35:33969..35085+ (Nannochloropsis oceanica)
ATGCGTTCCCTATTCCTCGTCGCCGCTGTTCTCCTCGTCTCCTTGCAAGC
CACTCTTGGCTTTCTCCTCCCCTTCCCCTCCACCCCTCGCTCCCTCTCCT
CCCCCCTTCGCTCCTCCATGGCCCCCGGCGAGGAGGCTGCGGAACGGGCA
GCGGCCACCGATAAAATCAAGTCGATGGTAGCCGACAACAAGGTCATGTT
GTTCATGAAGGGCTCAAAGCTGTTCCCTCAGTGTGGATTCTCCAACACTG
CGGTCTCTATTCTTCGGGCCGTCGATGCCGAGTTTGAGACGTTTGATGTA
CTGAGCGACTCATTGGTGCGAGAAGAGATCAAGACATTTAGCGCCTGGCC
CACCATTCCCCAGTGCTTTATCAACGGAGAATTTGTGGGGGGAAGTGACA
TTCTGCTGGAGATGTACGAGAGTGGGGAGCTAGAAAAGACTTTGGCTGAA
TTGAAAAAGTGAATGCGTTCCCTATTCCTCGTCGCCGCTGTTCTCCTCGT
CTCCTTGCAAGCCACTCTTGGCTTTCTCCTCCCCTTCCCCTCCACCCCTC
GCTCCCTCTCCTCCCCCCTTCGCTCCTCCATGGCCCCCGGCGAGGAGGCT
GCGGAACGGGCAGCGGCCACCGATAAAATCAAGTCGATGGTAGCCGACAA
CAAGGTCATGTTGTTCATGAAGGGCTCAAAGCTGTTCCCTCAGTGTGGAT
TCTCCAACACTGCGGTCTCTATTCTTCGGGCCGTCGATGCCGAGTTTGAG
ACGTTTGATGTACTGAGCGACTCATTGGTGCGAGAAGAGATCAAGACATT
TAGCGCCTGGCCCACCATTCCCCAGTGCTTTATCAACGGAGAATTTGTGG
GGGGAAGTGACATTCTGCTGGAGATGTACGAGAGTGGGGAGCTAGAAAAG
ACTTTGGCTGAATTGAAAAAGTGAATGCGTTCCCTATTCCTCGTCGCCGC
TGTTCTCCTCGTCTCCTTGCAAGCCACTCTTGGCTTTCTCCTCCCCTTCC
CCTCCACCCCTCGCTCCCTCTCCTCCCCCCTTCGCTCCTCCATGGCCCCC
GGCGAGGAGGCTGCGGAACGGGCAGCGGCCACCGATAAAATCAAGTCGAT
GGTAGCCGACAACAAGGTCATGTTGTTCATGAAGGGCTCAAAGCTGTTCC
CTCAGTGTGGATTCTCCAACACTGCGGTCTCTATTCTTCGGGCCGTCGAT
GCCGAGTTTGAGACGTTTGATGTACTGAGCGACTCATTGGTGCGAGAAGA
GATCAAGACATTTAGCGCCTGGCCCACCATTCCCCAGTGCTTTATCAACG
GAGAATTTGTGGGGGGAAGTGACATTCTGCTGGAGATGTACGAGAGTGGG
GAGCTAGAAAAGACTTTGGCTGAATTGAAAAAGTGA
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Synonyms
Publications