jgi.p|Nanoce1779_2|606313, mRNA_9303 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606313
Unique NamemRNA_9303
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1423
Alignment locationscaffold_35:31796..33302 +

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Properties
Property NameValue
TranscriptId606399
TrackFilteredModels2
ProteinId606313
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:31796..33302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606313gene_9303Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606313mRNA_9303-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9303CDS_9303Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9303 ID=mRNA_9303|Name=jgi.p|Nanoce1779_2|606313|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp
TGCGAAAGAAAGGCATGAAATATTTCTTTGTCGCTAATTCTTTCTGCTAC
ATCGCCTCGTTTTTTGTCGTGTGTTTGTTTGACAGTTTGGATGGCTTAAC
CCCCAGCACATATGGAAGGGTGTGCAGCATGTACACTTGGACACTTAATT
GATTCACATTCAATTTCACGCTTTCGTCCTCTCTGTTTTTAAATGGCGGA
CAACAACTAAAATATCACTTGCTTTCATTTTATAAGGGGTCTCTATCAAT
TGTTGTTTGATCTTCGCGAGGTAGGTGCAGCACTTCTGCTGCTCAAACCA
CCAGAGGACCGCAACCAGTGGTCACAATGTTGGATCGGCCAGCGGCAGGA
GCAGCAGCTGTGGCAGCTTTGGAAGGGGACGCTATTATAACATCTCATTG
CCTATTTTTTGTTTTTGATTTTTTATTCCTTATATTGCGAAATGCTTACA
TGGTGGGTTTTAATTCATGTATGTAAAGGCGAAGCTAAGTTTATAACTCT
TAGTGAGTCCCACGCAGGCTACGGTTATTGTCGCCGTGGTGGTTGGTGGA
GCCCATCGCCACATCAGCTTCCGCTCCCTGCTTGTTTCCCTCCTTCTCTT
CTATCGAGTCACGTGCGATGTCACGAGGAGCGCTCGTGCTGCCCACCCGG
CCCCATGCGACATGCTTGTCTCCCTCCTTCTCCTCTACCGAGTCACGTGC
GATGTCACGAGGAGCGCTCGTGCTGCCTACCTGCCCCCATGCGACATGCT
TCGGGCCAGCCACCGCTTGTCTCATGTCTGTTGCTCCTGCTGCTGTAGTA
CTGACAGCATTGTTCTGGTCCTTCGTAAAGAAGCGCATCTTCAACTGCTC
ACCGTCGGCCTGTAGGGAATTCGGGTGCGAAAGGCAGGGTGAGAGAAGGG
CTTGGGTACAGGGCGCATGCAGTGCAGAGTACGCGCACAGGGAAAACATC
TACTCAAGGGAAAGATCTGGCTCGGTCATGGTGTTACTTTTTACTGTTTT
CTGTCTTAACTCTTACCATGTCTTGCTGGGCCGTTGCAGAGAGGAAGAGG
GGGCCCAAAAAGAGGGCGCATGTCATTGGGCGTAGCAGCCACATATTGCT
GTGAGACAGGAAAAATGTGAGATGAATCTAGTGCAGACGTTACTAATCTT
ATGCTGTCAAGGGCTCTTATCCAACACACACAATGATGGGACGGGCTGTG
ATCGACAGAAGCAACCTAGACGCCGATGGGTGTCCAAGAGAGAGTAAAAC
ACAGCTCAAAAGTAAGAAAACATAATACACGGCACTGTTGTATATAATCG
GCCATGGTATATGCCCACTGCGAAGTTAACATTCTCAGCCGGGCATGCAT
GGCCAGCCAGAAAGCATGTGCGAGGGATCGTCACCCGCACCCCCCATTCC
CCCGTAAAAAATTGGGCATCACA
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protein sequence of jgi.p|Nanoce1779_2|606313

>mRNA_9303-protein ID=mRNA_9303-protein|Name=jgi.p|Nanoce1779_2|606313|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MSRGALVLPTRPHATCLSPSFSSTESRAMSRGALVLPTCPHATCFGPATA
CLMSVAPAAVVLTALFWSFVKKRIFNCSPSACREFGCERQGERRAWVQGA
CSAEYAHRENIYSRERSGSVMVLLFTVFCLNSYHVLLGRCREEEGAQKEG
ACHWA*
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mRNA from alignment at scaffold_35:31796..33302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9303 ID=mRNA_9303|Name=jgi.p|Nanoce1779_2|606313|organism=Nannochloropsis oceanica|type=mRNA|length=1507bp|location=Sequence derived from alignment at scaffold_35:31796..33302+ (Nannochloropsis oceanica)
TGCGAAAGAAAGGCATGAAATATTTCTTTGTCGCTAATTCTTTCTGCTAC
ATCGCCTCGTTTTTTGTCGTGTGTTTGTTTGACAGTTTGGATGGCTTAAC
CCCCAGCACATATGGAAGGGTGTGCAGCATGTACACTTGGACACTTAATT
GATTCACATTCAATTTCACGCTTTCGTCCTCTCTGTTTTTAAATGGCGGA
CAACAACTAAAATATCACTTGCTTTCATTTTATAAGGGGTCTCTATCAAT
TGTTGTTTGATCTTCGCGAGGTAGGTGCAGCACTTCTGCTGCTCAAACCA
CCAGAGGACCGCAACCAGTGGTCACAATGTTGGATCGGCCAGCGGCAGGA
GCAGCAGCTGTGGCAGCTTTGGAAGGGGACGCTATTATAACATCTCATTG
CCTATTTTTTGTTTTTGATTTTTTATTCCTTATATTGCGAAATGCTTACA
TGGTGGGTTTTAATTCATGTATGTAAAGGCGAAGCTAAGTTTATAACTCT
TAGTGAGTCCCACGCAGGCTACGGTTATTGTCGCCGTGGTGGTTGGTGGA
GCCCATCGCCACATCAGCTTCCGCTCCCTGCTTGTTTCCCTCCTTCTCCT
CTACCGAGTCACGTGCGATGTCACGAGGAGCGCTCGTGCTGCCCACCCGG
CCCCATGCGACATGCTTGTCTACCTCCTTCTCTTCTATCGAGTCACGTGC
GATGTCACGAGGAGCGCTCGTGCTGCCCACCCGGCCCCATGCGACATGCT
TGTCTCCCTCCTTCTCCTCTACCGAGTCACGTGCGATGTCACGAGGAGCG
CTCGTGCTGCCTACCTGCCCCCATGCGACATGCTTCGGGCCAGCCACCGC
TTGTCTCATGTCTGTTGCTCCTGCTGCTGTAGTACTGACAGCATTGTTCT
GGTCCTTCGTAAAGAAGCGCATCTTCAACTGCTCACCGTCGGCCTGTAGG
GAATTCGGGTGCGAAAGGCAGGGTGAGAGAAGGGCTTGGGTACAGGGCGC
ATGCAGTGCAGAGTACGCGCACAGGGAAAACATCTACTCAAGGGAAAGAT
CTGGCTCGGTCATGGTGTTACTTTTTACTGTTTTCTGTCTTAACTCTTAC
CATGTCTTGCTGGGCCGTTGCAGAGAGGAAGAGGGGGCCCAAAAAGAGGG
CGCATGTCATTGGGCGTAGCAGCCACATATTGCTGTGAGACAGGAAAAAT
GTGAGATGAATCTAGTGCAGACGTTACTAATCTTATGCTGTCAAGGGCTC
TTATCCAACACACACAATGATGGGACGGGCTGTGATCGACAGAAGCAACC
TAGACGCCGATGGGTGTCCAAGAGAGAGTAAAACACAGCTCAAAAGTAAG
AAAACATAATACACGGCACTGTTGTATATAATCGGCCATGGTATATGCCC
ACTGCGAAGTTAACATTCTCAGCCGGGCATGCATGGCCAGCCAGAAAGCA
TGTGCGAGGGATCGTCACCCGCACCCCCCATTCCCCCGTAAAAAATTGGG
CATCACA
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Coding sequence (CDS) from alignment at scaffold_35:31796..33302+

>mRNA_9303 ID=mRNA_9303|Name=jgi.p|Nanoce1779_2|606313|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_35:31796..33302+ (Nannochloropsis oceanica)
ATGTCACGAGGAGCGCTCGTGCTGCCCACCCGGCCCCATGCGACATGCTT
GTCTCCCTCCTTCTCCTCTACCGAGTCACGTGCGATGTCACGAGGAGCGC
TCGTGCTGCCTACCTGCCCCCATGCGACATGCTTCGGGCCAGCCACCGCT
TGTCTCATGTCTGTTGCTCCTGCTGCTGTAGTACTGACAGCATTGTTCTG
GTCCTTCGTAAAGAAGCGCATCTTCAACTGCTCACCGTCGGCCTGTAGGG
AATTCGGGTGCGAAAGGCAGGGTGAGAGAAGGGCTTGGGTACAGGGCGCA
TGCAGTGCAGAGTACGCGCACAGGGAAAACATCTACTCAAGGGAAAGATC
TGGCTCGGTCATGGTGTTACTTTTTACTGTTTTCTGTCTTAACTCTTACC
ATGTCTTGCTGGGCCGTTGCAGAGAGGAAGAGGGGGCCCAAAAAGAGGGC
GCATGTCATTGGGCGTAG
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Synonyms
Publications