jgi.p|Nanoce1779_2|606305, mRNA_9300 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|606305
Unique Name	mRNA_9300
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1385
Alignment location	scaffold_35:26173..28009 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606391
Track	FilteredModels2
ProteinId	606305

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:26173..28009 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606305	gene_9300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|606305	mRNA_9300-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9300	CDS_9300	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:26173..28009+
coding sequence from alignment at scaffold_35:26173..28009+

mRNA sequence

>mRNA_9300 ID=mRNA_9300|Name=jgi.p|Nanoce1779_2|606305|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
ACAGACCAAGTAACTCGCAAAAATCATCCCTCTGGGCGTCTTGTTGTTCC
TTGCTTATCCGCCTTCCTGGCGCCAGGCACCTGTCCAAGGCACATTTTTG
GGAACCTACCCTTCCTTTTCCCTCAACCCCGGAGCTACATAAATGCGGAA
TGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTC
CACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCA
CCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTC
CCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCC
CCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTC
ACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGC
GACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCC
TCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAA
TGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTC
CTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGC
TCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCA
CAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCA
TGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTC
GTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCAT
CTCGCACGAGACATTCTACCTGGGACGAAACTACGCGCGGGCCCTCTTTC
TGACTGCTGCCATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGAT
TCCTCCGTCTACTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAA
CTCCCTGACAAGTAAATACAGTGGCTCCGTCGTTCGCACCACTCACCTGA
CGGGCGCCAGTACCGACCTGGGCATTGCTCTGGGGCACATCATGAAGGGT
CGCTCGGAAGAGTGGTGGAAGGTCAAGCTGCACGGCATCGCTATCTTTGG
GTTCTTTTGTGGTGGGGTTGCCGGGCATTTCGCCTTTGAGGTAGAAGAAG
CAAGCCTTCCCTCGCTCCCTCCCTCCCTTTCCTCCGGTCGCTGTGTGTGC
GGGTGTGTGAGGTTGTGCGTGTATACCTCCCTCTGTCTCGATCCCTCTGG
GGCTCTCTTCCCTCCTTCATGACTCTCTCTCTTGCATCCCCCCTTCCCTC
CCCTCCTCCCTCAGACCTTCCAACACGGGGCCCTG

protein sequence of jgi.p|Nanoce1779_2|606305

>mRNA_9300-protein ID=mRNA_9300-protein|Name=jgi.p|Nanoce1779_2|606305|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MPDRVPLVHRHRKPHHFHFSDDVEEEEDATRQQHQHQQHQHQQHQHQHPS
PHSRSHHQPDSSPSFSSPFAPSSAAPALGGPSSSRTIARPKHPAAASLQR
RPTPLLSHYQQQHASSSSTPSATPKALAHKPPHNATTNTNKRLGQGGKPA
PPLPPHLSSSWPWVLFGSLTLTFNAGYINGITLHNLHHMASAHVTGMVAR
MSNLIAIREFGEFSAYFVAYSCFILGACMGGLLISHETFYLGRNYARALF
LTAAIQGVALLIEKEWDSSVYFVYACCLAMGLQNSLTSKYSGSVVRTTHL
TGASTDLGIALGHIMKGRSEEWWKVKLHGIAIFGFFCGGVAGHFAFEVEE
ASLPSLPPSLSSGRCVCGCVRLCVYTSLCLDPSGALFPPS*

mRNA from alignment at scaffold_35:26173..28009+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9300 ID=mRNA_9300|Name=jgi.p|Nanoce1779_2|606305|organism=Nannochloropsis oceanica|type=mRNA|length=1837bp|location=Sequence derived from alignment at scaffold_35:26173..28009+ (Nannochloropsis oceanica)
ACAGACCAAGTAACTCGCAAAAATCATCCCTCTGGGCGTCTTGTTGTTCC
TTGCTTATCCGCCTTCCTGGCGCCAGGCACCTGTCCAAGGCACATTTTTG
GGAACCTACCCTTCCTTTTCCCTCAACCCCGGAGCTACATAAATGCGGAA
TGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTC
CACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCA
CCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTC
CCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCC
CCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTC
ACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGC
GACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCC
TCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAA
TGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTC
CTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGC
TCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCA
CAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCA
TGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTC
GTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCAT
CTCGCACGAGACATTCTACCTGGTACGTTCGCGCATTTTTTCCCTATCTC
CTTCCCTTCTTCCCTTTCTCTCCTCGTCCCCTTCCTCTGTCCCATCCATC
CCTTCCCTCCACCCCACCCTTCCCCTCCCTCCCTCCCTCCTCCATCCCTT
CCCTTCACCCCACCCTTCCCTCCCTACCTCCCTCCATCTTCCCCCCATCC
TTCTTCGGCAGGGACGAAACTACGCGCGGGCCCTCTTTCTGACTGCTGCC
ATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGATTCCTCCGTCTA
CTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAACTCCCTGACAA
GTAAATACAGGTAGGGACATGGCACCCCTCCCTCCCTCCCTCCCTCCCCC
CCTCCCTCTGTCTACTTCGCCTATGCCTGCTGTCTGGCTACAGAGCCGCA
GGATTCCCAGCCAAGCAAATCCCTGTGGAAGCGTGTGTCTCCCTCACCAC
CCCCTTTCTCTTTCTCTCTCTTTCGTCTTGCCCCTTTCCCAACGAACGAG
ACCCTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCAGTGGCTCCGT
CGTTCGCACCACTCACCTGACGGGCGCCAGTACCGACCTGGGCATTGCTC
TGGGGCACATCATGAAGGGTCGCTCGGAAGAGTGGTGGAAGGTCAAGCTG
CACGGCATCGCTATCTTTGGGTTCTTTTGTGGTGGGGTTGCCGGGCATTT
CGCCTTTGAGGTAGAAGAAGCAAGCCTTCCCTCGCTCCCTCCCTCCCTTT
CCTCCGGTCGCTGTGTGTGCGGGTGTGTGAGGTTGTGCGTGTATACCTCC
CTCTGTCTCGATCCCTCTGGGGCTCTCTTCCCTCCTTCATGACTCTCTCT
CTTGCATCCCCCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCTCCTCCCTCAGACCTTCCAACACGGGGCCCTG

Coding sequence (CDS) from alignment at scaffold_35:26173..28009+

>mRNA_9300 ID=mRNA_9300|Name=jgi.p|Nanoce1779_2|606305|organism=Nannochloropsis oceanica|type=CDS|length=3519bp|location=Sequence derived from alignment at scaffold_35:26173..28009+ (Nannochloropsis oceanica)
ATGCCCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTT
CCACTTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGC
ACCAGCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCT
CCCCACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTC
CCCATTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTT
CACGCACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGG
CGACCTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTC
CTCTACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACA
ATGCCACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCT
CCTCCCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGG
CTCGTTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGC
ACAACCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGC
ATGAGCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTT
CGTCGCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCA
TCTCGCACGAGACATTCTACCTGGGACGAAACTACGCGCGGGCCCTCTTT
CTGACTGCTGCCATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGA
TTCCTCCGTCTACTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGA
ACTCCCTGACAAGTAAATACAGTGGCTCCGTCGTTCGCACCACTCACCTG
ACGGGCGCCAGTACCGACCTGGGCATTGCTCTGGGGCACATCATGAAGGG
TCGCTCGGAAGAGTGGTGGAAGGTCAAGCTGCACGGCATCGCTATCTTTG
GGTTCTTTTGTGGTGGGGTTGCCGGGCATTTCGCCTTTGAGGTAGAAGAA
GCAAGCCTTCCCTCGCTCCCTCCCTCCCTTTCCTCCGGTCGCTGTGTGTG
CGGGTGTGTGAGGTTGTGCGTGTATACCTCCCTCTGTCTCGATCCCTCTG
GGGCTCTCTTCCCTCCTTCATGAATGCCCGATCGCGTTCCACTTGTGCAC
CGTCATAGAAAGCCACACCATTTCCACTTTTCCGACGACGTCGAGGAGGA
GGAAGACGCCACGAGACAGCAGCACCAGCATCAGCAGCACCAGCATCAGC
AGCACCAGCACCAACATCCTTCTCCCCACAGCCGCTCTCACCACCAGCCC
GACTCATCGCCCTCCTTCTCTTCCCCATTCGCACCCTCGTCCGCGGCCCC
TGCTCTCGGCGGCCCTTCCTCTTCACGCACCATTGCTCGCCCCAAGCATC
CCGCCGCTGCCTCCCTGCAGCGGCGACCTACCCCTCTCCTCTCCCATTAC
CAGCAGCAACATGCCTCCTCCTCCTCTACGCCCTCAGCCACCCCTAAGGC
GTTAGCACATAAACCCCCGCACAATGCCACCACCAACACGAACAAACGGC
TAGGTCAGGGGGGGAAACCCGCTCCTCCCCTCCCTCCTCACCTCTCCTCG
TCGTGGCCCTGGGTATTGTTTGGCTCGTTAACCTTGACCTTTAATGCCGG
GTATATCAATGGGATTACCCTGCACAACCTGCATCACATGGCGTCGGCCC
ACGTGACAGGGATGGTGGCCCGCATGAGCAACCTGATTGCCATCCGTGAG
TTCGGCGAGTTCTCAGCCTATTTCGTCGCCTACAGCTGCTTCATTCTGGG
AGCCTGCATGGGAGGGCTGCTCATCTCGCACGAGACATTCTACCTGGGAC
GAAACTACGCGCGGGCCCTCTTTCTGACTGCTGCCATCCAGGGTGTCGCT
CTCCTGATCGAAAAAGAGTGGGATTCCTCCGTCTACTTCGTCTATGCCTG
CTGCCTGGCCATGGGCCTGCAGAACTCCCTGACAAGTAAATACAGTGGCT
CCGTCGTTCGCACCACTCACCTGACGGGCGCCAGTACCGACCTGGGCATT
GCTCTGGGGCACATCATGAAGGGTCGCTCGGAAGAGTGGTGGAAGGTCAA
GCTGCACGGCATCGCTATCTTTGGGTTCTTTTGTGGTGGGGTTGCCGGGC
ATTTCGCCTTTGAGGTAGAAGAAGCAAGCCTTCCCTCGCTCCCTCCCTCC
CTTTCCTCCGGTCGCTGTGTGTGCGGGTGTGTGAGGTTGTGCGTGTATAC
CTCCCTCTGTCTCGATCCCTCTGGGGCTCTCTTCCCTCCTTCATGAATGC
CCGATCGCGTTCCACTTGTGCACCGTCATAGAAAGCCACACCATTTCCAC
TTTTCCGACGACGTCGAGGAGGAGGAAGACGCCACGAGACAGCAGCACCA
GCATCAGCAGCACCAGCATCAGCAGCACCAGCACCAACATCCTTCTCCCC
ACAGCCGCTCTCACCACCAGCCCGACTCATCGCCCTCCTTCTCTTCCCCA
TTCGCACCCTCGTCCGCGGCCCCTGCTCTCGGCGGCCCTTCCTCTTCACG
CACCATTGCTCGCCCCAAGCATCCCGCCGCTGCCTCCCTGCAGCGGCGAC
CTACCCCTCTCCTCTCCCATTACCAGCAGCAACATGCCTCCTCCTCCTCT
ACGCCCTCAGCCACCCCTAAGGCGTTAGCACATAAACCCCCGCACAATGC
CACCACCAACACGAACAAACGGCTAGGTCAGGGGGGGAAACCCGCTCCTC
CCCTCCCTCCTCACCTCTCCTCGTCGTGGCCCTGGGTATTGTTTGGCTCG
TTAACCTTGACCTTTAATGCCGGGTATATCAATGGGATTACCCTGCACAA
CCTGCATCACATGGCGTCGGCCCACGTGACAGGGATGGTGGCCCGCATGA
GCAACCTGATTGCCATCCGTGAGTTCGGCGAGTTCTCAGCCTATTTCGTC
GCCTACAGCTGCTTCATTCTGGGAGCCTGCATGGGAGGGCTGCTCATCTC
GCACGAGACATTCTACCTGGGACGAAACTACGCGCGGGCCCTCTTTCTGA
CTGCTGCCATCCAGGGTGTCGCTCTCCTGATCGAAAAAGAGTGGGATTCC
TCCGTCTACTTCGTCTATGCCTGCTGCCTGGCCATGGGCCTGCAGAACTC
CCTGACAAGTAAATACAGTGGCTCCGTCGTTCGCACCACTCACCTGACGG
GCGCCAGTACCGACCTGGGCATTGCTCTGGGGCACATCATGAAGGGTCGC
TCGGAAGAGTGGTGGAAGGTCAAGCTGCACGGCATCGCTATCTTTGGGTT
CTTTTGTGGTGGGGTTGCCGGGCATTTCGCCTTTGAGGTAGAAGAAGCAA
GCCTTCCCTCGCTCCCTCCCTCCCTTTCCTCCGGTCGCTGTGTGTGCGGG
TGTGTGAGGTTGTGCGTGTATACCTCCCTCTGTCTCGATCCCTCTGGGGC
TCTCTTCCCTCCTTCATGA

Synonyms

Publications