jgi.p|Nanoce1779_2|574696, mRNA_930 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|574696
Unique NamemRNA_930
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1385
Alignment locationscaffold_2:778018..779652 -

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Properties
Property NameValue
TranscriptId574782
TrackFilteredModels2
ProteinId574696
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:778018..779652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574696gene_930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|574696mRNA_930-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_930CDS_930Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_930 ID=mRNA_930|Name=jgi.p|Nanoce1779_2|574696|organism=Nannochloropsis oceanica|type=mRNA|length=1385bp
ACAGGAGGTCCTACCGCGCGGCGGCGTCACCCAACCAACGGCTGGAGGCC
CCCGCCCGCCAGTCCTGTCCCAGTAAGACTAGGCCGAAACCGCGTTAAGG
CATGGTCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATC
TCTGTCGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGC
TTGACTTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGC
ACGGGCGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGG
CACTCTTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTC
GACCAAATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTT
GAGCGCGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCAT
TGCACGACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCAC
CCGGACGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAG
CTGCGAAGGGTGGGGCGTGATGCCGGCAATTCATAATGTCACACAGTCAT
GTGGTTTGTTGCACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCA
GTCCAGCAGCAGCGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGA
GCAACAAGATCGTCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTAC
CACCAGCATCGCAGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAA
GAAGGTATCCTGGGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCAC
GCAGCACACAATGTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAG
CTCGCGGCGCCCAAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCG
GTCCGTCAAGGTAAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGT
AAATATCGATGCGTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGC
ATGAGATTCCTTTGGACGCGGACCAGCTGCAGTGCGTAGAAGAAGTGTCG
GCGGAATGTTTGGACGCAAAAAATTCAGGCCAGCTTCGTGTTTGTGTTAA
TAGGGGGGTCAGAAAGCAAACGCTGCGTCCAGCATGCCTCAGTTATTTGT
ACCAGTAGCGTCCTCACAGTTTGTACAGGTTGAGAAAAGCTAAATTACTG
CGTGGACTTCATAATTGTGGGATGTGATTTAGAAAATCGGCCAAAAGCTT
GTGTGGCTCTGACACATGTATACCCGTTCTTGACCACAATAAAAATATAG
AAAAAAACGATTCGTTCTATCTCAGGATCCCGCTT
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protein sequence of jgi.p|Nanoce1779_2|574696

>mRNA_930-protein ID=mRNA_930-protein|Name=jgi.p|Nanoce1779_2|574696|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MVHLVPFIFNLFLGAHLCRAARISAGYEGEQQRLTLQCTYAETARVQLAA
RALGMCLDVKIDDVKEALFLQKQHGNLLGGIDLDQITTCLQAQKEEKFVL
SAACREELARFDEKASLHDGSPASKIASIFRDHPDEMCACIEAIDVSEIS
CEGWGVMPAIHNVTQSCGLLHGSPVLTPSKDFPVQQQRQQHQHPEQPDQE
QQDRQSAPATIDGPPLPPASQPSHRLDPQFGGEEGILGNFREPYHPDERT
QHTMYCYEAAVHLCPQARGAQNPLIFQKCVERAVRQGKLGGECLIVLKEV
NIDALALQEIQGLLGRHEIPLDADQLQCVEEVSAECLDAKNSGQLRVCVN
RGVRKQTLRPACLSYLYQ*
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mRNA from alignment at scaffold_2:778018..779652-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_930 ID=mRNA_930|Name=jgi.p|Nanoce1779_2|574696|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_2:778018..779652- (Nannochloropsis oceanica)
ACAGGAGGTCCTACCGCGCGGCGGCGTCACCCAACCAACGGCTGGAGGCC
CCCGCCCGCCAGTCCTGTCCCAGTAAGACTAGGCCGAAACCGCGTTAAGG
CATGGTCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATC
TCTGTCGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGC
TTGACTTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGC
ACGGGCGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGG
CACTCTTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTC
GACCAAATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTT
GAGCGCGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCAT
TGCACGACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCAC
CCGGACGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAG
CTGCGAAGGGTGGGGCGTGGTAAGAGAGTGGAAGGGTGTGTGTGAGTGTG
TGTGTGACTCTCTCTCTCTCTTTACGAATGTCAAGCAAGCATGAGGACTT
CATGCTTGTCACCCTCAAATACTTCAGATATTTGAATAAAACACACATTG
ATGAATGCGAGCCGCCGCGCTCCCCCTCTTTCTACATCTTCTTTTGTATG
CTAATCCAACACATTGATTGTCTCTCGTCAACTCAACCCCGTCACATCTC
TGCCCCGACCTACTATTAGATGCCGGCAATTCATAATGTCACACAGTCAT
GTGGTTTGTTGCACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCA
GTCCAGCAGCAGCGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGA
GCAACAAGATCGTCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTAC
CACCAGCATCGCAGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAA
GAAGGTATCCTGGGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCAC
GCAGCACACAATGTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAG
CTCGCGGCGCCCAAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCG
GTCCGTCAAGGTAAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGT
AAATATCGATGCGTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGC
ATGAGATTCCTTTGGACGCGGACCAGCTGCAGTGCGTAGAAGAAGTGTCG
GCGGAATGTTTGGACGCAAAAAATTCAGGCCAGCTTCGTGTTTGTGTTAA
TAGGGGGGTCAGAAAGCAAACGCTGCGTCCAGCATGCCTCAGTTATTTGT
ACCAGTAGCGTCCTCACAGTTTGTACAGGTTGAGAAAAGCTAAATTACTG
CGTGGACTTCATAATTGTGGGATGTGATTTAGAAAATCGGCCAAAAGCTT
GTGTGGCTCTGACACATGTATACCCGTTCTTGACCACAATAAAAATATAG
AAAAAAACGATTCGTTCTATCTCAGGATCCCGCTT
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Coding sequence (CDS) from alignment at scaffold_2:778018..779652-

>mRNA_930 ID=mRNA_930|Name=jgi.p|Nanoce1779_2|574696|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_2:778018..779652- (Nannochloropsis oceanica)
ATGCCGGCAATTCATAATGTCACACAGTCATGTGGTTTGTTGCACGGTTC
TCCCGTTCTGACACCTTCGAAGGACTTTCCAGTCCAGCAGCAGCGGCAGC
AGCACCAACATCCAGAGCAACCCGACCAAGAGCAACAAGATCGTCAATCA
GCGCCAGCGACGATCGATGGCCCTCCTTTACCACCAGCATCGCAGCCATC
CCATCGTCTCGACCCGCAGTTTGGCGGCGAAGAAGGTATCCTGGGTAACT
TCCGAGAGCCTTATCACCCAGATGAGCGCACGCAGCACACAATGTACTGT
TATGAAGCCGCGGTTCATCTGTGCCCCCAAGCTCGCGGCGCCCAAAACCC
TTTAATTTTCCAGAAATGCGTAGAAAGAGCGGTCCGTCAAGGTAAGTTAG
GTGGAGAATGTTTAATTGTTTTGAAAGAAGTAAATATCGATGCGTTGGCG
CTGCAAGAGATTCAGGGCCTTCTGGGCCGGCATGAGATTCCTTTGGACGC
GGACCAGCTGCAGTGCGTAGAAGAAGTGTCGGCGGAATGTTTGGACGCAA
AAAATTCAGGCCAGCTTCGTGTTTGTGTTAATAGGGGGGTCAGAAAGCAA
ACGCTGCGTCCAGCATGCCTCAGTTATTTGTACCAGTAGATGGTCCATCT
TGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATCTCTGTCGAGCTG
CTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGCTTGACTTTGCAA
TGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGCACGGGCGCTGGG
GATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGGCACTCTTCTTGC
AGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTCGACCAAATCACA
ACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTTGAGCGCGGCCTG
TAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCATTGCACGACGGGA
GCCCAGCATCTAAAATTGCATCAATATTTCGGGACCACCCGGACGAAATG
TGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAGCTGCGAAGGGTG
GGGCGTGATGCCGGCAATTCATAATGTCACACAGTCATGTGGTTTGTTGC
ACGGTTCTCCCGTTCTGACACCTTCGAAGGACTTTCCAGTCCAGCAGCAG
CGGCAGCAGCACCAACATCCAGAGCAACCCGACCAAGAGCAACAAGATCG
TCAATCAGCGCCAGCGACGATCGATGGCCCTCCTTTACCACCAGCATCGC
AGCCATCCCATCGTCTCGACCCGCAGTTTGGCGGCGAAGAAGGTATCCTG
GGTAACTTCCGAGAGCCTTATCACCCAGATGAGCGCACGCAGCACACAAT
GTACTGTTATGAAGCCGCGGTTCATCTGTGCCCCCAAGCTCGCGGCGCCC
AAAACCCTTTAATTTTCCAGAAATGCGTAGAAAGAGCGGTCCGTCAAGGT
AAGTTAGGTGGAGAATGTTTAATTGTTTTGAAAGAAGTAAATATCGATGC
GTTGGCGCTGCAAGAGATTCAGGGCCTTCTGGGCCGGCATGAGATTCCTT
TGGACGCGGACCAGCTGCAGTGCGTAGAAGAAGTGTCGGCGGAATGTTTG
GACGCAAAAAATTCAGGCCAGCTTCGTGTTTGTGTTAATAGGGGGGTCAG
AAAGCAAACGCTGCGTCCAGCATGCCTCAGTTATTTGTACCAGTAGATGG
TCCATCTTGTCCCCTTCATCTTCAACCTGTTCCTAGGCGCCCATCTCTGT
CGAGCTGCTCGAATTTCAGCTGGCTATGAAGGTGAGCAGCAGCGCTTGAC
TTTGCAATGCACCTACGCAGAGACCGCTCGAGTGCAACTTGCCGCACGGG
CGCTGGGGATGTGCTTGGACGTGAAAATCGATGATGTGAAGGAGGCACTC
TTCTTGCAGAAGCAGCATGGCAATCTGCTTGGAGGTATCGACCTCGACCA
AATCACAACCTGTTTGCAAGCACAAAAGGAGGAGAAATTTGTCTTGAGCG
CGGCCTGTAGGGAGGAGTTGGCGCGCTTTGATGAGAAGGCCTCATTGCAC
GACGGGAGCCCAGCATCTAAAATTGCATCAATATTTCGGGACCACCCGGA
CGAAATGTGTGCCTGTATCGAGGCCATCGACGTCTCGGAAATCAGCTGCG
AAGGGTGGGGCGTG
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Synonyms
Publications