jgi.p|Nanoce1779_2|533304, mRNA_9299 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533304
Unique NamemRNA_9299
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_35:22659..23568 -

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Properties
Property NameValue
TranscriptId533390
TrackFilteredModels2
ProteinId533304
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:22659..23568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533304gene_9299Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533304mRNA_9299-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9299CDS_9299Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9299 ID=mRNA_9299|Name=jgi.p|Nanoce1779_2|533304|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGCACCAACGGCGAGGCTCTGGAGGAGAAGGAAAGGGTAGCAAGAAAAC
GACGATCCCAGGGTTCTTGACGAAAACCTTTGAGATTTTTTCGAGTGGAG
AGTTCAAGGACCTGTGTGGGTGGGGGCCGAGGGGGGACACGATTCTCATC
AAAAAGGTACCCGAATTTTCTGCCCGGGTATTGCCCAGGTACTTCAAACA
CTCCAATTTTCAATCCTTCGTGCGACAGCTCAACATGTACGATTTCCACA
AGACGGTGCAGGACCCTTCCCACGGCGAATTCCGACACGAATTCTTTCGG
CAGGACAGACCGGACCTCCTAGGGTTTATAAAGAGGAAAATCTCTCAGCC
TCTGGGAGGAGGGGGGGGGGGATGGAGGAGGAGGGGGTGTGGAACAGCCG
GTGCTCCCGCAGCAGCAGCAGCAGCATCACATCCGCCCGCCCTTGCCCGC
AGAATTATTGCACCAGCAGCAGCAGCAGCAGCAGCTTCAGCAGCAGCAGC
TTCAGCACCAGCAGCACCAGCAGCACCAGCAGCTTCAGCAATTACAGCAG
CAGCAGCAGCAACAACAGCAGCAACAAGAGCAGCTGCAGCAGCAACAGCA
GCCACCACCCAACAAGAGCTGGCAAAAACGCACCGAGACACGCCTGTGGG
AAGCTGA
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protein sequence of jgi.p|Nanoce1779_2|533304

>mRNA_9299-protein ID=mRNA_9299-protein|Name=jgi.p|Nanoce1779_2|533304|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MHQRRGSGGEGKGSKKTTIPGFLTKTFEIFSSGEFKDLCGWGPRGDTILI
KKVPEFSARVLPRYFKHSNFQSFVRQLNMYDFHKTVQDPSHGEFRHEFFR
QDRPDLLGFIKRKISQPLGGGGGGWRRRGCGTAGAPAAAAAASHPPALAR
RIIAPAAAAAAASAAAASAPAAPAAPAASAITAAAAATTAATRAAAAATA
ATTQQELAKTHRDTPVGS*
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mRNA from alignment at scaffold_35:22659..23568-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9299 ID=mRNA_9299|Name=jgi.p|Nanoce1779_2|533304|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_35:22659..23568- (Nannochloropsis oceanica)
ATGCACCAACGGCGAGGCTCTGGAGGAGAAGGAAAGGGTAGCAAGAAAAC
GACGATCCCAGGGTTCTTGACGAAAACCTTTGAGATTTTTTCGAGTGGAG
AGTTCAAGGACCTGTGTGGGTGGGGGCCGAGGGGGGACACGATTCTCATC
AAAAAGGTACCCGAATTTTCTGCCCGGGTATTGCCCAGGTAAGGAGAGGA
TGCAGGCAGGCAAGCAGGCAGGCAGGTAGGCAGGCAGGCCGAGACGGGTA
TCAGAAGCGCCCCCCTCTCCAAACGAGTGCATGTTTTGTTCCCTCCCTTC
CTCTCTACTCCCTCAAGGGTATCTTAAACACTCCAATATCCAGCCTACTC
CCAACAGCCCAAAACATAGGCCTTTCTCAAGGCAGCCAAGCCCCCCTCTC
ATCCCCCCTCTCTCCTATCCCCCCCCCCCTTCCTTCTCCAGGTACTTCAA
ACACTCCAATTTTCAATCCTTCGTGCGACAGCTCAACATGTACGATTTCC
ACAAGACGGTGCAGGACCCTTCCCACGGCGAATTCCGACACGAATTCTTT
CGGCAGGACAGACCGGACCTCCTAGGGTTTATAAAGAGGAAAATCTCTCA
GCCTCTGGGAGGAGGGGGGGGGGGATGGAGGAGGAGGGGGTGTGGAACAG
CCGGTGCTCCCGCAGCAGCAGCAGCAGCATCACATCCGCCCGCCCTTGCC
CGCAGAATTATTGCACCAGCAGCAGCAGCAGCAGCAGCTTCAGCAGCAGC
AGCTTCAGCACCAGCAGCACCAGCAGCACCAGCAGCTTCAGCAATTACAG
CAGCAGCAGCAGCAACAACAGCAGCAACAAGAGCAGCTGCAGCAGCAACA
GCAGCCACCACCCAACAAGAGCTGGCAAAAACGCACCGAGACACGCCTGT
GGGAAGCTGA
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Coding sequence (CDS) from alignment at scaffold_35:22659..23568-

>mRNA_9299 ID=mRNA_9299|Name=jgi.p|Nanoce1779_2|533304|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_35:22659..23568- (Nannochloropsis oceanica)
GTACTTCAAACACTCCAATTTTCAATCCTTCGTGCGACAGCTCAACATGT
ACGATTTCCACAAGACGGTGCAGGACCCTTCCCACGGCGAATTCCGACAC
GAATTCTTTCGGCAGGACAGACCGGACCTCCTAGGGTTTATAAAGAGGAA
AATCTCTCAGCCTCTGGGAGGAGGGGGGGGGGGATGGAGGAGGAGGGGGT
GTGGAACAGCCGGTGCTCCCGCAGCAGCAGCAGCAGCATCACATCCGCCC
GCCCTTGCCCGCAGAATTATTGCACCAGCAGCAGCAGCAGCAGCAGCTTC
AGCAGCAGCAGCTTCAGCACCAGCAGCACCAGCAGCACCAGCAGCTTCAG
CAATTACAGCAGCAGCAGCAGCAACAACAGCAGCAACAAGAGCAGCTGCA
GCAGCAACAGCAGCCACCACCCAACAAGAGCTGGCAAAAACGCACCGAGA
CACGCCTGTGGGAAGCTGAATGCACCAACGGCGAGGCTCTGGAGGAGAAG
GAAAGGGTAGCAAGAAAACGACGATCCCAGGGTTCTTGACGAAAACCTTT
GAGATTTTTTCGAGTGGAGAGTTCAAGGACCTGTGTGGGTGGGGGCCGAG
GGGGGACACGATTCTCATCAAAAAGGTACCCGAATTTTCTGCCCGGGTAT
TGCCCAGGTACTTCAAACACTCCAATTTTCAATCCTTCGTGCGACAGCTC
AACATGTACGATTTCCACAAGACGGTGCAGGACCCTTCCCACGGCGAATT
CCGACACGAATTCTTTCGGCAGGACAGACCGGACCTCCTAGGGTTTATAA
AGAGGAAAATCTCTCAGCCTCTGGGAGGAGGGGGGGGGGGATGGAGGAGG
AGGGGGTGTGGAACAGCCGGTGCTCCCGCAGCAGCAGCAGCAGCATCACA
TCCGCCCGCCCTTGCCCGCAGAATTATTGCACCAGCAGCAGCAGCAGCAG
CAGCTTCAGCAGCAGCAGCTTCAGCACCAGCAGCACCAGCAGCACCAGCA
GCTTCAGCAATTACAGCAGCAGCAGCAGCAACAACAGCAGCAACAAGAGC
AGCTGCAGCAGCAACAGCAGCCACCACCCAACAAGAGCTGGCAAAAACGC
ACCGAGACACGCCTGTGGGAAGCTGAATGCACCAACGGCGAGGCTCTGGA
GGAGAAGGAAAGGGTAGCAAGAAAACGACGATCCCAGGGTTCTTGACGAA
AACCTTTGAGATTTTTTCGAGTGGAGAGTTCAAGGACCTGTGTGGGTGGG
GGCCGAGGGGGGACACGATTCTCATCAAAAAGGTACCCGAATTTTCTGCC
CGGGTATTGCCCAG
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Synonyms
Publications