jgi.p|Nanoce1779_2|627337, mRNA_929 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627337
Unique Name	mRNA_929
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1277
Alignment location	scaffold_2:776741..778017 -

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Properties


Property Name	Value
TranscriptId	627423
Track	FilteredModels2
ProteinId	627337

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:776741..778017 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627337	gene_929	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627337	mRNA_929-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_929	CDS_929	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:776741..778017-
coding sequence from alignment at scaffold_2:776741..778017-

mRNA sequence

>mRNA_929 ID=mRNA_929|Name=jgi.p|Nanoce1779_2|627337|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp
ATATTAATCCCAATAGATACTTGCATCCTCTTTCTTATAGACATTTGTAC
ATTTTGTCAATTTGAAGTTATTCCTCTCTTGTACCGTCCCCGTTTGTCTC
ATGGCGTGGTGACGGTGGCTCCGAGTGGCGTTGCCTTTCGTTCAAATGTA
TATACCACGCCCTTTTTGTCGTCGTGAAATCTCTTATACGGACGGTAAGC
TTCAGCTGGAGGATGGGCAATTTGGCTTTTTTGTGTTAGGTAGAGTTCGA
TATCTGCACAGACATTCGCATGAAAACAGAAGGCATTTCAAGATCGAACA
CACTTTAAATCAGTATGTTCGCTAGAGTACGCATGTAAGCGTCGCACATC
ATTCCTCGTCCCATGGCCAACTCATACCCGGCAGTACCCGTAGCGGCAGC
ATTTATGCAATTGGAAGAAACCACGCCCCTTTCTGCATGGCTCAGCCATC
TGGCTACTTATTCATCTCCACAGGGCTGCCAAGGCTAGGTTAGGCGTAGC
TTTTGGCGGTGCCCGCCGCACCATTCAGCTCGCAGCCACCTTCTGCCACG
CTTCTGCGCCTGCCCCAGCCCAAGCTTCATCACTTGGTAACATGATCAAG
TTTATTCTCTTCGTTAACAAGCAAGGCCAAACCCGGCTTTCAAGCTATTA
CACATGGATGAGTATCCCGGAGCGCGTGGCCTTGGAAGCAGAGATTATTC
GCAAGTGCTTGTCGCGGTCCGAATTGCAGTGTCAATTCATCGAGTACCGG
GGGCATAAGGTCATATACCGGCGGTACGCATCACTCTTCTTCATTGTTGG
CGTGGACGGGGATGATGTCGCGGCCGGCGGTGGGGATGGGAATGCGGGGG
GGGGAGGGGAGAATGAGCTGGGCATTTTGGAGTTCATTCATGCGTTAGTG
GAGACGTTGGACAAGTACTTTGAGAGCGTCTGCGAGCTCGACATCATGTT
CAATTTAGAAAAGGCACACTTCATTGTGGATGAGATGGTTGGTAATGGCT
ATATTGTGGACACTAACAAGGCCAATGTTCTGAAGCCTATCCATCTCATG
GAGAAGGCTAGTGCAAGCGAGGAGTCTATTTTCTCGAGAAGAGGGTGAGG
ACGTAAAGCACACAAGGCCATGTACACTGGAATTGAAGGAATCCAGAGCA
AGCATAGTCGTGGCATGGAATCCAGAGCAAGCATAGTCGTGGCATAGATC
AATGAGAAAGAAGAAGGGAAAGACAAATGAACATGGATGCAAGTAAAAAG
AAAGAGCAAAATGAAACCCTGCCGTGC

protein sequence of jgi.p|Nanoce1779_2|627337

>mRNA_929-protein ID=mRNA_929-protein|Name=jgi.p|Nanoce1779_2|627337|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MIKFILFVNKQGQTRLSSYYTWMSIPERVALEAEIIRKCLSRSELQCQFI
EYRGHKVIYRRYASLFFIVGVDGDDVAAGGGDGNAGGGGENELGILEFIH
ALVETLDKYFESVCELDIMFNLEKAHFIVDEMVGNGYIVDTNKANVLKPI
HLMEKASASEESIFSRRG*

mRNA from alignment at scaffold_2:776741..778017-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_929 ID=mRNA_929|Name=jgi.p|Nanoce1779_2|627337|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp|location=Sequence derived from alignment at scaffold_2:776741..778017- (Nannochloropsis oceanica)
ATATTAATCCCAATAGATACTTGCATCCTCTTTCTTATAGACATTTGTAC
ATTTTGTCAATTTGAAGTTATTCCTCTCTTGTACCGTCCCCGTTTGTCTC
ATGGCGTGGTGACGGTGGCTCCGAGTGGCGTTGCCTTTCGTTCAAATGTA
TATACCACGCCCTTTTTGTCGTCGTGAAATCTCTTATACGGACGGTAAGC
TTCAGCTGGAGGATGGGCAATTTGGCTTTTTTGTGTTAGGTAGAGTTCGA
TATCTGCACAGACATTCGCATGAAAACAGAAGGCATTTCAAGATCGAACA
CACTTTAAATCAGTATGTTCGCTAGAGTACGCATGTAAGCGTCGCACATC
ATTCCTCGTCCCATGGCCAACTCATACCCGGCAGTACCCGTAGCGGCAGC
ATTTATGCAATTGGAAGAAACCACGCCCCTTTCTGCATGGCTCAGCCATC
TGGCTACTTATTCATCTCCACAGGGCTGCCAAGGCTAGGTTAGGCGTAGC
TTTTGGCGGTGCCCGCCGCACCATTCAGCTCGCAGCCACCTTCTGCCACG
CTTCTGCGCCTGCCCCAGCCCAAGCTTCATCACTTGGTAACATGATCAAG
TTTATTCTCTTCGTTAACAAGCAAGGCCAAACCCGGCTTTCAAGCTATTA
CACATGGATGAGTATCCCGGAGCGCGTGGCCTTGGAAGCAGAGATTATTC
GCAAGTGCTTGTCGCGGTCCGAATTGCAGTGTCAATTCATCGAGTACCGG
GGGCATAAGGTCATATACCGGCGGTACGCATCACTCTTCTTCATTGTTGG
CGTGGACGGGGATGATGTCGCGGCCGGCGGTGGGGATGGGAATGCGGGGG
GGGGAGGGGAGAATGAGCTGGGCATTTTGGAGTTCATTCATGCGTTAGTG
GAGACGTTGGACAAGTACTTTGAGAGCGTCTGCGAGCTCGACATCATGTT
CAATTTAGAAAAGGCACACTTCATTGTGGATGAGATGGTTGGTAATGGCT
ATATTGTGGACACTAACAAGGCCAATGTTCTGAAGCCTATCCATCTCATG
GAGAAGGCTAGTGCAAGCGAGGAGTCTATTTTCTCGAGAAGAGGGTGAGG
ACGTAAAGCACACAAGGCCATGTACACTGGAATTGAAGGAATCCAGAGCA
AGCATAGTCGTGGCATGGAATCCAGAGCAAGCATAGTCGTGGCATAGATC
AATGAGAAAGAAGAAGGGAAAGACAAATGAACATGGATGCAAGTAAAAAG
AAAGAGCAAAATGAAACCCTGCCGTGC

Coding sequence (CDS) from alignment at scaffold_2:776741..778017-

>mRNA_929 ID=mRNA_929|Name=jgi.p|Nanoce1779_2|627337|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_2:776741..778017- (Nannochloropsis oceanica)
ATGATCAAGTTTATTCTCTTCGTTAACAAGCAAGGCCAAACCCGGCTTTC
AAGCTATTACACATGGATGAGTATCCCGGAGCGCGTGGCCTTGGAAGCAG
AGATTATTCGCAAGTGCTTGTCGCGGTCCGAATTGCAGTGTCAATTCATC
GAGTACCGGGGGCATAAGGTCATATACCGGCGGTACGCATCACTCTTCTT
CATTGTTGGCGTGGACGGGGATGATGTCGCGGCCGGCGGTGGGGATGGGA
ATGCGGGGGGGGGAGGGGAGAATGAGCTGGGCATTTTGGAGTTCATTCAT
GCGTTAGTGGAGACGTTGGACAAGTACTTTGAGAGCGTCTGCGAGCTCGA
CATCATGTTCAATTTAGAAAAGGCACACTTCATTGTGGATGAGATGGTTG
GTAATGGCTATATTGTGGACACTAACAAGGCCAATGTTCTGAAGCCTATC
CATCTCATGGAGAAGGCTAGTGCAAGCGAGGAGTCTATTTTCTCGAGAAG
AGGGTGA

Synonyms

Publications