jgi.p|Nanoce1779_2|266566, mRNA_9287 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|266566
Unique NamemRNA_9287
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length772
Alignment locationscaffold_33:195132..196217 -

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Properties
Property NameValue
TranscriptId266652
TrackFilteredModels2
ProteinId266566
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:195132..196217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|266566gene_9287Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|266566mRNA_9287-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9287CDS_9287Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9287 ID=mRNA_9287|Name=jgi.p|Nanoce1779_2|266566|organism=Nannochloropsis oceanica|type=mRNA|length=772bp
GACTGGTGCGTCAGTCTCGTATGTCACTCTACTCAGGTTGTGCTGATTGT
TTGTTCGCGTAGACGGTGTCTATATGGCAGGACTGCATGGAGGTCCTTGC
CAGCTCGTTTAAGATGCGCCTTATTTCTTACCGCCATCCAACCCCACCCC
CTACCCCTCCCTCCTTCATTCTCTCCCCCTTCCAGAGCTCATGCAACTGG
AGAGCCGCTTGGCGATGAATGACACGATGGCCTTTACGCAGGTGGCTGAA
GCCCTTTTTTCCTCCGGCCGCGTGATGGAAGGCCTCTTCCTCGTCAATGC
CGGCATCGAGGCGGCCAAAACCGCCCCCCCACCCACAGCCAAGGACCAGG
AACTCGCGCTCTTGAACCTGATTGCGGGCTTCCCACTCATCTCGTTGGGG
TCCTCGGATGCGTGCGGCTTCGTGACGGACTTCCAATACTGCCACGTGGA
CGTGGCGACCATCTATCTTCGGTTCGGGCTGTGCGTGCCTGCGGCTTGCA
ATGCCCAGGATATTCAGTTAGGGCTTAACGCGACGTATTTTAAGCTGACC
AAGAGCTACCTCGACAGGTGCGTGGGCGAGGGAGCGTCCCACCGCCATGC
CCCTCTCCCTCTCCCCCTTCCTCATGCATCTACGTTTGTCTGTTTGATTT
CATACATTCATAGAGTGGTCGATGTCCTCCGATCTCTATCCCTCCCCCTC
CTCCCCAATACATTTGTTTGATTGGCTGATTTCATTCGTATCCGACTTGC
ACTCTTCTTCCTCCCTCTCCCT
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protein sequence of jgi.p|Nanoce1779_2|266566

>mRNA_9287-protein ID=mRNA_9287-protein|Name=jgi.p|Nanoce1779_2|266566|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MQLESRLAMNDTMAFTQVAEALFSSGRVMEGLFLVNAGIEAAKTAPPPTA
KDQELALLNLIAGFPLISLGSSDACGFVTDFQYCHVDVATIYLRFGLCVP
AACNAQDIQLGLNATYFKLTKSYLDRCVGEGASHRHAPLPLPLPHASTFV
CLISYIHRVVDVLRSLSLPLLPNTFV*
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mRNA from alignment at scaffold_33:195132..196217-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9287 ID=mRNA_9287|Name=jgi.p|Nanoce1779_2|266566|organism=Nannochloropsis oceanica|type=mRNA|length=1086bp|location=Sequence derived from alignment at scaffold_33:195132..196217- (Nannochloropsis oceanica)
GACTGGTGCGTCAGTCTCGTATGTCACTCTACTCAGGTTGTGCTGATTGT
TTGTTCGCGTAGACGGTGTCTATATGGCAGGACTGCATGGAGGTCCTTGC
CAGCTCGTTTAAGATGCGCCTTATTTCTTACCGCCATCCAACCCCACCCC
CTACCCCTCCCTCCTTCATTCTCTCCCCCTTCCAGAGCTCATGCAACTGG
AGAGCCGCTTGGCGATGAATGACACGATGGCCTTTACGCAGGTAGAGAAG
AAGGGAGGGAAAGGTGGAGGGAAGGATGGAGGGAAGGAAGAAGGGAAGGA
GGGAGGGAAGGACGGAAGTGCTTTAGAGAGGGTTGGAGGGAGGGAGGGTA
AGTTTCTTACTATACTCAGGAGACCGCAGCCGCACATTCGCTCTCCTCCT
CTTCACCATCGATATTAAACCCAGGTGCAGAAATAACGGTACCGGCAGCG
TTTTTCCTCACCCTATACCCCCTCCGTCCCTCCCTCCCTCCCTCCCTCTC
TCCTTCCTTCCCTCCGTCCCTCCCTTCTTCCCTCCCTCCCTCCCTCTCTG
ACAAGGTGGCTGAAGCCCTTTTTTCCTCCGGCCGCGTGATGGAAGGCCTC
TTCCTCGTCAATGCCGGCATCGAGGCGGCCAAAACCGCCCCCCCACCCAC
AGCCAAGGACCAGGAACTCGCGCTCTTGAACCTGATTGCGGGCTTCCCAC
TCATCTCGTTGGGGTCCTCGGATGCGTGCGGCTTCGTGACGGACTTCCAA
TACTGCCACGTGGACGTGGCGACCATCTATCTTCGGTTCGGGCTGTGCGT
GCCTGCGGCTTGCAATGCCCAGGATATTCAGTTAGGGCTTAACGCGACGT
ATTTTAAGCTGACCAAGAGCTACCTCGACAGGTGCGTGGGCGAGGGAGCG
TCCCACCGCCATGCCCCTCTCCCTCTCCCCCTTCCTCATGCATCTACGTT
TGTCTGTTTGATTTCATACATTCATAGAGTGGTCGATGTCCTCCGATCTC
TATCCCTCCCCCTCCTCCCCAATACATTTGTTTGATTGGCTGATTTCATT
CGTATCCGACTTGCACTCTTCTTCCTCCCTCTCCCT
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Coding sequence (CDS) from alignment at scaffold_33:195132..196217-

>mRNA_9287 ID=mRNA_9287|Name=jgi.p|Nanoce1779_2|266566|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_33:195132..196217- (Nannochloropsis oceanica)
GTGGCTGAAGCCCTTTTTTCCTCCGGCCGCGTGATGGAAGGCCTCTTCCT
CGTCAATGCCGGCATCGAGGCGGCCAAAACCGCCCCCCCACCCACAGCCA
AGGACCAGGAACTCGCGCTCTTGAACCTGATTGCGGGCTTCCCACTCATC
TCGTTGGGGTCCTCGGATGCGTGCGGCTTCGTGACGGACTTCCAATACTG
CCACGTGGACGTGGCGACCATCTATCTTCGGTTCGGGCTGTGCGTGCCTG
CGGCTTGCAATGCCCAGGATATTCAGTTAGGGCTTAACGCGACGTATTTT
AAGCTGACCAAGAGCTACCTCGACAGGTGCGTGGGCGAGGGAGCGTCCCA
CCGCCATGCCCCTCTCCCTCTCCCCCTTCCTCATGCATCTACGTTTGTCT
GTTTGATTTCATACATTCATAGAGTGGTCGATGTCCTCCGATCTCTATCC
CTCCCCCTCCTCCCCAATACATTTGTTTGAATGCAACTGGAGAGCCGCTT
GGCGATGAATGACACGATGGCCTTTACGCAGGTGGCTGAAGCCCTTTTTT
CCTCCGGCCGCGTGATGGAAGGCCTCTTCCTCGTCAATGCCGGCATCGAG
GCGGCCAAAACCGCCCCCCCACCCACAGCCAAGGACCAGGAACTCGCGCT
CTTGAACCTGATTGCGGGCTTCCCACTCATCTCGTTGGGGTCCTCGGATG
CGTGCGGCTTCGTGACGGACTTCCAATACTGCCACGTGGACGTGGCGACC
ATCTATCTTCGGTTCGGGCTGTGCGTGCCTGCGGCTTGCAATGCCCAGGA
TATTCAGTTAGGGCTTAACGCGACGTATTTTAAGCTGACCAAGAGCTACC
TCGACAGGTGCGTGGGCGAGGGAGCGTCCCACCGCCATGCCCCTCTCCCT
CTCCCCCTTCCTCATGCATCTACGTTTGTCTGTTTGATTTCATACATTCA
TAGAGTGGTCGATGTCCTCCGATCTCTATCCCTCCCCCTCCTCCCCAATA
CATTTGTTTGAATGCAACTGGAGAGCCGCTTGGCGATGAATGACACGATG
GCCTTTACGCAG
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Synonyms
Publications