jgi.p|Nanoce1779_2|266142, mRNA_9284 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|266142
Unique NamemRNA_9284
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length695
Alignment locationscaffold_33:183983..184919 -

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Properties
Property NameValue
TranscriptId266228
TrackFilteredModels2
ProteinId266142
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:183983..184919 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|266142gene_9284Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|266142mRNA_9284-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9284CDS_9284Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9284 ID=mRNA_9284|Name=jgi.p|Nanoce1779_2|266142|organism=Nannochloropsis oceanica|type=mRNA|length=695bp
GCTCTCCCTACTCGTTTGATTCTCCTCGCTGTCCTTCACGTTGTTCAAAA
CGTGACACACAGATAGACAGTGGCTTTGTCACTCTGGTGCTTAGGTAGGC
GTGTGACCGTGAGCGCCCTGTCTTTTGTGCCCGTACTGGATGTACGTCAC
ACCGCAACCTCTCTGGTGCCTGTACAACTTTTAAATATGGCCCACACGAG
ACGACCGAACACATCCCGCCACCACCACAGGCGGCCATGCCGCGCCCACC
CCTGCGACGGGGCACGGCAGCTTCTCTATTACTACTGCTGAGCTCACTGG
TGTTAGCTCTGGGTTTTGTGCCCGTGGAGCAAAGCCAACGACAAGAGCAA
GTTGAGCTCGACGAGAAGGGCGTCCGACGATCCCTTCGACGCAACATCCC
CGACTTGCCTACCTCTTCTCAAAGCCAACAACAACCAGTAGCAGCCCAGC
CTCAACCCCCTCATCGTTCCCTCCAACAGGAGGGAGAGAAGGAGGACGAG
TGGGAGGAAGGGAAAATGGGCACAGCCGCCGCATTGGTGGAGGGCGCGTT
CAGCACTCTTGTGCTTAGTCCGGAGGATCCATGGATTGGGGATAAGGACG
TATGGAGATAGGGGGGCAGGGAGGGATGAAGGGAGGGAGGTACGGGCGGG
AGAAGATCGTTTTGTTCGTGCTACTACCGCCCAAGACCCAAAGCA
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protein sequence of jgi.p|Nanoce1779_2|266142

>mRNA_9284-protein ID=mRNA_9284-protein|Name=jgi.p|Nanoce1779_2|266142|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MPRPPLRRGTAASLLLLLSSLVLALGFVPVEQSQRQEQVELDEKGVRRSL
RRNIPDLPTSSQSQQQPVAAQPQPPHRSLQQEGEKEDEWEEGKMGTAAAL
VEGAFSTLVLSPEDPWIGDKDVWR*
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mRNA from alignment at scaffold_33:183983..184919-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9284 ID=mRNA_9284|Name=jgi.p|Nanoce1779_2|266142|organism=Nannochloropsis oceanica|type=mRNA|length=937bp|location=Sequence derived from alignment at scaffold_33:183983..184919- (Nannochloropsis oceanica)
GCTCTCCCTACTCGTTTGATTCTCCTCGCTGTCCTTCACGTTGTTCAAAA
CGTGACACACAGATAGACAGTGGCTTTGTCACTCTGGTGCTTAGGTAGGC
GTGTGACCGTGAGCGCCCTGTCTTTTGTGCCCGTACTGGATGTACGTCAC
ACCGCAACCTCTCTGGTGCCTGTACAACTTTTAAATATGGCCCACACGAG
ACGACCGAACACATCCCGCCACCACCACAGGCGGCCATGCCGCGCCCACC
CCTGCGACGGGGCACGGCAGCTTCTCTATTACTACTGCTGAGCTCACTGG
TGTTAGCTCTGGGTTTTGTGCCCGTGGAGCAAAGCCAACGACAAGAGCAA
GTTGAGCTCGACGAGAAGGGCGTCCGACGATGTAAGTAGTAGAGTAGGAA
GGGGAAAGACGTTGAAATGGATTCAGTGACAAAATACCAGTTAAAATAAT
TAATCTTACAGGCCCGTGTCCTGGTATTATAGGGTGCATTTTCCCCTTCC
CTCCGATCCTCCCCCTAACAACCCCCCCCTTTCCCACGTGTATTTACCCC
GGTGCCCTTCCTTCCTCTTCACGGTCTTATTTATTAATGCACTTGCACTG
AACCCAACCCCTCCGTTCAACAGCCCTTCGACGCAACATCCCCGACTTGC
CTACCTCTTCTCAAAGCCAACAACAACCAGTAGCAGCCCAGCCTCAACCC
CCTCATCGTTCCCTCCAACAGGAGGGAGAGAAGGAGGACGAGTGGGAGGA
AGGGAAAATGGGCACAGCCGCCGCATTGGTGGAGGGCGCGTTCAGCACTC
TTGTGCTTAGTCCGGAGGATCCATGGATTGGGGATAAGGACGTATGGAGA
TAGGGGGGCAGGGAGGGATGAAGGGAGGGAGGTACGGGCGGGAGAAGATC
GTTTTGTTCGTGCTACTACCGCCCAAGACCCAAAGCA
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Coding sequence (CDS) from alignment at scaffold_33:183983..184919-

>mRNA_9284 ID=mRNA_9284|Name=jgi.p|Nanoce1779_2|266142|organism=Nannochloropsis oceanica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_33:183983..184919- (Nannochloropsis oceanica)
CCCTTCGACGCAACATCCCCGACTTGCCTACCTCTTCTCAAAGCCAACAA
CAACCAGTAGCAGCCCAGCCTCAACCCCCTCATCGTTCCCTCCAACAGGA
GGGAGAGAAGGAGGACGAGTGGGAGGAAGGGAAAATGGGCACAGCCGCCG
CATTGGTGGAGGGCGCGTTCAGCACTCTTGTGCTTAGTCCGGAGGATCCA
TGGATTGGGGATAAGGACGTATGGAGATAGATGCCGCGCCCACCCCTGCG
ACGGGGCACGGCAGCTTCTCTATTACTACTGCTGAGCTCACTGGTGTTAG
CTCTGGGTTTTGTGCCCGTGGAGCAAAGCCAACGACAAGAGCAAGTTGAG
CTCGACGAGAAGGGCGTCCGACGATCCCTTCGACGCAACATCCCCGACTT
GCCTACCTCTTCTCAAAGCCAACAACAACCAGTAGCAGCCCAGCCTCAAC
CCCCTCATCGTTCCCTCCAACAGGAGGGAGAGAAGGAGGACGAGTGGGAG
GAAGGGAAAATGGGCACAGCCGCCGCATTGGTGGAGGGCGCGTTCAGCAC
TCTTGTGCTTAGTCCGGAGGATCCATGGATTGGGGATAAGGACGTATGGA
GATAGATGCCGCGCCCACCCCTGCGACGGGGCACGGCAGCTTCTCTATTA
CTACTGCTGAGCTCACTGGTGTTAGCTCTGGGTTTTGTGCCCGTGGAGCA
AAGCCAACGACAAGAGCAAGTTGAGCTCGACGAGAAGGGCGTCCGACGAT
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Synonyms
Publications