jgi.p|Nanoce1779_2|605965, mRNA_9280 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605965
Unique Name	mRNA_9280
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1495
Alignment location	scaffold_33:172000..174564 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	606051
Track	FilteredModels2
ProteinId	605965

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:172000..174564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605965	gene_9280	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605965	mRNA_9280-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9280	CDS_9280	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:172000..174564+
coding sequence from alignment at scaffold_33:172000..174564+

mRNA sequence

>mRNA_9280 ID=mRNA_9280|Name=jgi.p|Nanoce1779_2|605965|organism=Nannochloropsis oceanica|type=mRNA|length=1495bp
ACAGCTTCAACAAAATACTGCTAGCATGCCGCGGTTCCACGCCCTCCTCC
TACTCCTCCTCTCCGTGCTCTCCCTCCTGGCTCTCACCCACGGCCAAGCC
TCGTTTGCAGAGGACATTTTCGCGGATGAGGACGAGGTGCCCATCCTGGG
CTATGACACCGCGGGCAACCCAATCAAGCCGGAGGTGAAGCGAGAGATCA
ACACACAGGTGCACACGACCAACCCCGACCTGGGCAAGAGGGCGCAGAAG
GTGGACCTGCCCTTCATCGCTTGTGACGTCTGCACGCTCGTCATGACCGA
GCTACACAACCAAACCGCCGTGCTGGCGACCAAGGCCGAGAATCTTGTGA
ACGGGAAGCCCAAGAAGAGCGTGATGCTGAAGCTGACCAAGCGCGTGTGC
GATCACGCCACCTTCGAGGGGCGTTGGATCTCCTACTATGACATCCAGGA
GAAGGAGCGCGTGGGCGGCATTGCCCTCAAGCTCGTCAAGCAGCCTGAGA
GCGGCATGTGCGAGGTGGAGGCGGAGACTATTGCCAAGAGCTGCTCAGAC
CTCTTCAAGAAGGACCATGTGGAGCGGGATGAGGTAGGGAGGGAGGGAGG
AAGGGAGAAAAAGAGGGGTAAACAGAAGGCTACGGAGAAGATGATTTGGG
AAGACTCAGGAGGGAAGGAGAAACGGAGGGAGGGGAGGAGGGAGGAGGGA
AAGGGGGTTCCTAGCCCTCATTTCTTCTTTCTCTTCTCTCAGCTCCTTTC
GGCATTACCAATTGTTGGTATTGATGATAATGAATGATCACCAATCAATG
TTGATAATGACATGTATATTATGTTTGTATTATCGTTAAGTAATCATAGT
GATATGAGCTGACCACACCCACTACCAGGTGGTAGACGACCTGTAAATGA
TAAAAATGAAAAATAAAATAATAATAATAATAATAACGATAAAAAAATAA
AAATATAATAACAATAATGATAATTATTATTGTTTTTTAATTATCATCAT
CACTACCATCACCAATACCGTCACAATCATCATCATCATCATCAAAGCAA
TTGTAATATTAAAAATAATGATGATATGACACGCCCCCCCCCCCTCCCAG
GTGGTGGACGACCTGGTGGAGCAGGTCATCTCCAAGAGCGGCCTTGTCAC
TAAGTATTGCAAGGACATCTCCTCCCGGTGCTCCAAGAACACCCAGTCCC
TCATGGAGAAGGGCAAGCGCCGCGACCACAAGTTCCATGTCAAAACGAAG
GAGGCCAAGTCGTACGACAGGATCATGGACGCTTTTGCCGAGGCTGGCGT
ACTGGGGAATGACGACGGCACGGCGGCGCCTGACATCATGGACCGCTTCG
ACAACGTGCTGAAGATGCTCGAGGAGAACGGAGAGCTCTGAGCGCAAGGG
GCAGGCAGGCAGGGAGGGAGGGAAGGAGGGAGGAGTGAAGGGGGAGGGAG
GCGATGGGCCTTGAATTGGCTGCTCTTGTCCACGGTATGTGCCAA

protein sequence of jgi.p|Nanoce1779_2|605965

>mRNA_9280-protein ID=mRNA_9280-protein|Name=jgi.p|Nanoce1779_2|605965|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MPRFHALLLLLLSVLSLLALTHGQASFAEDIFADEDEVPILGYDTAGNPI
KPEVKREINTQVHTTNPDLGKRAQKVDLPFIACDVCTLVMTELHNQTAVL
ATKAENLVNGKPKKSVMLKLTKRVCDHATFEGRWISYYDIQEKERVGGIA
LKLVKQPESGMCEVEAETIAKSCSDLFKKDHVERDEVGREGGREKKRGKQ
KATEKMIWEDSGGKEKRREGRREEGKGVPSPHFFFLFSQLLSALPIVGID
DNE*

mRNA from alignment at scaffold_33:172000..174564+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9280 ID=mRNA_9280|Name=jgi.p|Nanoce1779_2|605965|organism=Nannochloropsis oceanica|type=mRNA|length=2565bp|location=Sequence derived from alignment at scaffold_33:172000..174564+ (Nannochloropsis oceanica)
ACAGCTTCAACAAAATACTGCTAGCATGCCGCGGTTCCACGCCCTCCTCC
TACTCCTCCTCTCCGTGCTCTCCCTCCTGGCTCTCACCCACGGCCAAGCC
TCGTTTGCAGAGGACATTTTCGCGGATGAGGACGAGGTGCCCATCCTGGG
CTATGACACCGCGGGCAACCCAATCAAGCCGGAGGTGAAGCGAGAGATCA
ACACACAGTGAGTGGGCGGGAGGGAAGGAGGAGTGATAGAAGGAGGGTCG
AGGACTCGGCCTTGGCAACGCCAAGCGGCCGGACGTGAGGAGGGCGCCTC
GGCACGCCTCTACAAGGGAGGGAGAAGTGGGACCCTCAATATTAATGTGC
CTTTAGGTGGCTTCGCATGTGACTGTGATCCTCCTCTTTTCCCTCCCTCC
GTCCCTGCGCCACAGGGTGCACACGACCAACCCCGACCTGGGCAAGAGGG
CGCAGAAGGTGGACCTGCCCTTCATCGCTTGTGACGTCTGCACGCTCGTC
ATGACCGAGGTAGGAGAGAAGGAAGAGAAGGGGAGGGGGGGCGAGTGGGT
TCATCTGAAAAGCAGCAGAGGAGGATCCTACGACACTGGTGCTTTCAACC
TCCTTACCCTCCTCACCCTCCCCCCATCCCTCCCTCCCTCCTTTTGTTTG
CAGCTACACAACCAAACCGCCGTGCTGGCGACCAAGGCCGAGAATCTTGT
GAACGGGAAGCCCAAGAAGAGCGTGATGCTGAAGCTGACCAAGCGCGTGT
GCGATCACGCCACCTTCGAGGGGCGTTGGATCTCCTACTATGACATCCAG
GTAGGGAGAGGGGGAGGGACGGAAGGGAGGAGGGAAACGGGGAAGGGAGG
AAGGGGGGCTGAAACGCCAACCCAATCATATGCTCATCCTCCCTCCCTCC
CTCCTTCCATCCCTTCTTCTCCCTGTCTTGCACCCCCAGGAGAAGGAGCG
CGTGGGCGGCATTGCCCTCAAGCTCGTCAAGCAGCCTGAGAGCGGCATGT
GCGAGGTACGTGCCCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCCTCCCT
CCCTCCCTCCTGACCCTCCCATTTCCCATCGCCTTTCACTTATCCCCGTT
ACCCCCCTCCTTGCAGGTGGAGGCGGAGACTATTGCCAAGAGCTGCTCAG
ACCTCTTCAAGAAGGACCATGTGGAGCGGGATGAGGTAGGGAGGGAGGGA
GGAAGGGAGAAAAAGAGGGGTAAACAGAAGGCTACGGAGAAGATGATTTG
GGAAGACTCAGGAGGGAAGGAGAAACGGAGGGAGGGGAGGAGGGAGGAGG
GAAAGGGGGTTCCTAGCCCTCATTTCTTCTTTCTCTTCTCTCAGCTCCTT
TCGGCATTACCAATTGTTGGTATTGATGATAATGAATGATCACCAATCAA
TGTTGATAATGACATGTATATTATGTTTGTATTATCGTTAAGTAATCATA
GTGATATGAGCTGACCACACCCACTACCAGGTGGTAGACGACCTGTAAAT
GATAAAAATGAAAAATAAAATAATAATAATAATAATAACGATAAAAAAAT
AAAAATATAATAACAATAATGATAATTATTATTGTTTTTTAATTATCATC
ATCACTACCATCACCAATACCGTCACAATCATCATCATCATCATCAAAGC
AATTGTAATATTAAAAATAATGATGATATGACACGCCCCCCCCCCCTCCC
AGGTGGTGGACGACCTGGTGGAGCAGGTCATCTCCAAGAGCGGCCTTGTC
ACTAAGTATTGCAAGGACATCTCCTCCCGGTACGCACCCTTCCTCCCTCC
CTCCCTCCCTCCCTTTCCTCTCCTTGTGGTCCACCCACCCCTACTTCTAA
TCCCTCCCTCCCTCCCTTCCTCCCTCCCTAGGTGCTCCAAGAACACCCAG
TCCCTCATGGAGAAGGGCAAGCGCCGCGACCACAAGTTCCATGTACGCCT
CCCTCCCTCCCTCCCTCCCTCCCTGGCCATCCTGCCCGCCTCCTCCAGCC
CGTCATATTGACACTCCCATATCCCCCATACACCTCCCACCGACATGCTC
ATCGGTCTTTCCCCTTCCCTCCTTTCTTCCCTCCCTCCCTCCCTCCTGCA
GGTCAAAACGAAGGAGGCCAAGTCGTACGACAGGATCATGGACGCTTTTG
CCGAGGCTGGCGTACTGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGCAGATGCACGGACACCAAACCGAATCGCTCTCTCCCTCTC
GAGAAGGTCAGACAGGAAGAGAGAGAGGACGGGAGGGGGGAAAGGACGGA
GGGAAGAAGGAAAAAAGTGGAATGTTCATGCTCAATTTCTCCTTCCCCCC
ACACTGCCTCTCTTTCCTCCGGTAGGGAATGACGACGGCACGGCGGCGCC
TGACATCATGGACCGCTTCGACAACGTGCTGAAGATGCTCGAGGAGAACG
GAGAGCTCTGAGCGCAAGGGGCAGGCAGGCAGGGAGGGAGGGAAGGAGGG
AGGAGTGAAGGGGGAGGGAGGCGATGGGCCTTGAATTGGCTGCTCTTGTC
CACGGTATGTGCCAA

Coding sequence (CDS) from alignment at scaffold_33:172000..174564+

>mRNA_9280 ID=mRNA_9280|Name=jgi.p|Nanoce1779_2|605965|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_33:172000..174564+ (Nannochloropsis oceanica)
ATGCCGCGGTTCCACGCCCTCCTCCTACTCCTCCTCTCCGTGCTCTCCCT
CCTGGCTCTCACCCACGGCCAAGCCTCGTTTGCAGAGGACATTTTCGCGG
ATGAGGACGAGGTGCCCATCCTGGGCTATGACACCGCGGGCAACCCAATC
AAGCCGGAGGTGAAGCGAGAGATCAACACACAGGTGCACACGACCAACCC
CGACCTGGGCAAGAGGGCGCAGAAGGTGGACCTGCCCTTCATCGCTTGTG
ACGTCTGCACGCTCGTCATGACCGAGCTACACAACCAAACCGCCGTGCTG
GCGACCAAGGCCGAGAATCTTGTGAACGGGAAGCCCAAGAAGAGCGTGAT
GCTGAAGCTGACCAAGCGCGTGTGCGATCACGCCACCTTCGAGGGGCGTT
GGATCTCCTACTATGACATCCAGGAGAAGGAGCGCGTGGGCGGCATTGCC
CTCAAGCTCGTCAAGCAGCCTGAGAGCGGCATGTGCGAGGTGGAGGCGGA
GACTATTGCCAAGAGCTGCTCAGACCTCTTCAAGAAGGACCATGTGGAGC
GGGATGAGGTAGGGAGGGAGGGAGGAAGGGAGAAAAAGAGGGGTAAACAG
AAGGCTACGGAGAAGATGATTTGGGAAGACTCAGGAGGGAAGGAGAAACG
GAGGGAGGGGAGGAGGGAGGAGGGAAAGGGGGTTCCTAGCCCTCATTTCT
TCTTTCTCTTCTCTCAGCTCCTTTCGGCATTACCAATTGTTGGTATTGAT
GATAATGAATGAATGCCGCGGTTCCACGCCCTCCTCCTACTCCTCCTCTC
CGTGCTCTCCCTCCTGGCTCTCACCCACGGCCAAGCCTCGTTTGCAGAGG
ACATTTTCGCGGATGAGGACGAGGTGCCCATCCTGGGCTATGACACCGCG
GGCAACCCAATCAAGCCGGAGGTGAAGCGAGAGATCAACACACAGGTGCA
CACGACCAACCCCGACCTGGGCAAGAGGGCGCAGAAGGTGGACCTGCCCT
TCATCGCTTGTGACGTCTGCACGCTCGTCATGACCGAGCTACACAACCAA
ACCGCCGTGCTGGCGACCAAGGCCGAGAATCTTGTGAACGGGAAGCCCAA
GAAGAGCGTGATGCTGAAGCTGACCAAGCGCGTGTGCGATCACGCCACCT
TCGAGGGGCGTTGGATCTCCTACTATGACATCCAGGAGAAGGAGCGCGTG
GGCGGCATTGCCCTCAAGCTCGTCAAGCAGCCTGAGAGCGGCATGTGCGA
GGTGGAGGCGGAGACTATTGCCAAGAGCTGCTCAGACCTCTTCAAGAAGG
ACCATGTGGAGCGGGATGAGGTAGGGAGGGAGGGAGGAAGGGAGAAAAAG
AGGGGTAAACAGAAGGCTACGGAGAAGATGATTTGGGAAGACTCAGGAGG
GAAGGAGAAACGGAGGGAGGGGAGGAGGGAGGAGGGAAAGGGGGTTCCTA
GCCCTCATTTCTTCTTTCTCTTCTCTCAGCTCCTTTCGGCATTACCAATT
GTTGGTATTGATGATAATGAATGAATGCCGCGGTTCCACGCCCTCCTCCT
ACTCCTCCTCTCCGTGCTCTCCCTCCTGGCTCTCACCCACGGCCAAGCCT
CGTTTGCAGAGGACATTTTCGCGGATGAGGACGAGGTGCCCATCCTGGGC
TATGACACCGCGGGCAACCCAATCAAGCCGGAGGTGAAGCGAGAGATCAA
CACACAGGTGCACACGACCAACCCCGACCTGGGCAAGAGGGCGCAGAAGG
TGGACCTGCCCTTCATCGCTTGTGACGTCTGCACGCTCGTCATGACCGAG
CTACACAACCAAACCGCCGTGCTGGCGACCAAGGCCGAGAATCTTGTGAA
CGGGAAGCCCAAGAAGAGCGTGATGCTGAAGCTGACCAAGCGCGTGTGCG
ATCACGCCACCTTCGAGGGGCGTTGGATCTCCTACTATGACATCCAGGAG
AAGGAGCGCGTGGGCGGCATTGCCCTCAAGCTCGTCAAGCAGCCTGAGAG
CGGCATGTGCGAGGTGGAGGCGGAGACTATTGCCAAGAGCTGCTCAGACC
TCTTCAAGAAGGACCATGTGGAGCGGGATGAGGTAGGGAGGGAGGGAGGA
AGGGAGAAAAAGAGGGGTAAACAGAAGGCTACGGAGAAGATGATTTGGGA
AGACTCAGGAGGGAAGGAGAAACGGAGGGAGGGGAGGAGGGAGGAGGGAA
AGGGGGTTCCTAGCCCTCATTTCTTCTTTCTCTTCTCTCAGCTCCTTTCG
GCATTACCAATTGTTGGTATTGATGATAATGAATGAATGCCGCGGTTCCA
CGCCCTCCTCCTACTCCTCCTCTCCGTGCTCTCCCTCCTGGCTCTCACCC
ACGGCCAAGCCTCGTTTGCAGAGGACATTTTCGCGGATGAGGACGAGGTG
CCCATCCTGGGCTATGACACCGCGGGCAACCCAATCAAGCCGGAGGTGAA
GCGAGAGATCAACACACAGGTGCACACGACCAACCCCGACCTGGGCAAGA
GGGCGCAGAAGGTGGACCTGCCCTTCATCGCTTGTGACGTCTGCACGCTC
GTCATGACCGAGCTACACAACCAAACCGCCGTGCTGGCGACCAAGGCCGA
GAATCTTGTGAACGGGAAGCCCAAGAAGAGCGTGATGCTGAAGCTGACCA
AGCGCGTGTGCGATCACGCCACCTTCGAGGGGCGTTGGATCTCCTACTAT
GACATCCAGGAGAAGGAGCGCGTGGGCGGCATTGCCCTCAAGCTCGTCAA
GCAGCCTGAGAGCGGCATGTGCGAGGTGGAGGCGGAGACTATTGCCAAGA
GCTGCTCAGACCTCTTCAAGAAGGACCATGTGGAGCGGGATGAGGTAGGG
AGGGAGGGAGGAAGGGAGAAAAAGAGGGGTAAACAGAAGGCTACGGAGAA
GATGATTTGGGAAGACTCAGGAGGGAAGGAGAAACGGAGGGAGGGGAGGA
GGGAGGAGGGAAAGGGGGTTCCTAGCCCTCATTTCTTCTTTCTCTTCTCT
CAGCTCCTTTCGGCATTACCAATTGTTGGTATTGATGATAATGAATGAAT
GCCGCGGTTCCACGCCCTCCTCCTACTCCTCCTCTCCGTGCTCTCCCTCC
TGGCTCTCACCCACGGCCAAGCCTCGTTTGCAGAGGACATTTTCGCGGAT
GAGGACGAGGTGCCCATCCTGGGCTATGACACCGCGGGCAACCCAATCAA
GCCGGAGGTGAAGCGAGAGATCAACACACAGGTGCACACGACCAACCCCG
ACCTGGGCAAGAGGGCGCAGAAGGTGGACCTGCCCTTCATCGCTTGTGAC
GTCTGCACGCTCGTCATGACCGAGCTACACAACCAAACCGCCGTGCTGGC
GACCAAGGCCGAGAATCTTGTGAACGGGAAGCCCAAGAAGAGCGTGATGC
TGAAGCTGACCAAGCGCGTGTGCGATCACGCCACCTTCGAGGGGCGTTGG
ATCTCCTACTATGACATCCAGGAGAAGGAGCGCGTGGGCGGCATTGCCCT
CAAGCTCGTCAAGCAGCCTGAGAGCGGCATGTGCGAGGTGGAGGCGGAGA
CTATTGCCAAGAGCTGCTCAGACCTCTTCAAGAAGGACCATGTGGAGCGG
GATGAGGTAGGGAGGGAGGGAGGAAGGGAGAAAAAGAGGGGTAAACAGAA
GGCTACGGAGAAGATGATTTGGGAAGACTCAGGAGGGAAGGAGAAACGGA
GGGAGGGGAGGAGGGAGGAGGGAAAGGGGGTTCCTAGCCCTCATTTCTTC
TTTCTCTTCTCTCAGCTCCTTTCGGCATTACCAATTGTTGGTATTGATGA
TAATGAATGA

Synonyms

Publications