jgi.p|Nanoce1779_2|605956, mRNA_9278 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|605956
Unique Name	mRNA_9278
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1162
Alignment location	scaffold_33:165659..167433 +

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Properties


Property Name	Value
TranscriptId	606042
Track	FilteredModels2
ProteinId	605956

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:165659..167433 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605956	gene_9278	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|605956	mRNA_9278-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9278	CDS_9278	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:165659..167433+
coding sequence from alignment at scaffold_33:165659..167433+

mRNA sequence

>mRNA_9278 ID=mRNA_9278|Name=jgi.p|Nanoce1779_2|605956|organism=Nannochloropsis oceanica|type=mRNA|length=1162bp
AATGGGATTTTCTTTTCTCTTGGTTTTCTGTTCCACCAGCTTGGTACAGC
ACACCACCCGGAAGTCAAGCTTCAATGCACGCGCTGACATGGGGGGGCGA
TGTCAACTGTCCGTCGTCTCACGTCATTCCGAATACAAGGAACAGCAGCA
GCGGGAGATCCAGAAGCGGCACTGCTCGTGAAGCGAGGACATGAGGAGAG
CACTGGCTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGTGACTATCTGG
CTCATGGCGGCCTCCAACGCCCTCAGGCCGCTGTCCTCATCCTCTTCCAC
AAGACTAAGATCATCAGCCCTCTTTCAATTCTTGCACTCTTCCCCTTGCT
CCTCCTGCTCATCTTCCACCCCTCACGACGACCACCACCACCACCACCAC
CATTCCTGCGGCTGTGGATCTCGCCCCTCCTTCTCCTCCCCCCGGCAAAT
ATCTCGCACCTCATCATATCAACAAAGAAGAGCTCCTCCTTCCTTCCTAG
CCCTTCAAGGCGGTCCTCTGCTGGACTATGACATGATCCACGTGGCGGGC
GATGTCGTGGCGGGCTTTGTGGGCGGCGCCGTGGGGGTCATGGGCACCAT
CATGGCCCTTGAGGTCAAGATGCGGCAAGTAAATGAACGCAGCAAGTGTC
CCTATTGCTCCGGTTCAGGCCAGCTGACGTGTGCTCGGTGCTGCGGCCTG
CAAAGCATAAGCATCCGTCGAGGTGCCGAGGGAGGGGGCGAAGGAGGGCG
GGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGGCGTGGGGACGGTCCTGT
GCATCAACTGCAAGGGCGACGGGCTGGCCATCCCGGTGATGCTGGACAAG
AAGGTGTCGAGGGACCCGGAGACGCGGCTGGAGGAGTACGGCATGGGGTA
AGGAGCTCCTCCTACCTCCCCACCTCCCCCCCTCCCTCACTCAGGGGTGT
GTGGCCTTTGGTTGGAGTGGTGAGGTGAAGAGGACGTGGCAGGGACTAGG
AGGGCGTAGCGACTGCGGCTTATGGCAGATCCACAGGAGGGGGATTAATG
AGCACGCAAAAAGCTGGGCCTCGAGGTGCTGGGGGAAGGAGGGGGAGGAG
GAGGGTAACGAAGAAAAGGAAGAGGAGGAGAAAGGAGGAATGGGCCGAGG
CGAAGAGGGAGT

protein sequence of jgi.p|Nanoce1779_2|605956

>mRNA_9278-protein ID=mRNA_9278-protein|Name=jgi.p|Nanoce1779_2|605956|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MRRALARVTPRLLVLLVTIWLMAASNALRPLSSSSSTRLRSSALFQFLHS
SPCSSCSSSTPHDDHHHHHHHSCGCGSRPSFSSPRQISRTSSYQQRRAPP
SFLALQGGPLLDYDMIHVAGDVVAGFVGGAVGVMGTIMALEVKMRQVNER
SKCPYCSGSGQLTCARCCGLQSISIRRGAEGGGEGGRVEKEPCPSCLGVG
TVLCINCKGDGLAIPVMLDKKVSRDPETRLEEYGMG*

mRNA from alignment at scaffold_33:165659..167433+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9278 ID=mRNA_9278|Name=jgi.p|Nanoce1779_2|605956|organism=Nannochloropsis oceanica|type=mRNA|length=1775bp|location=Sequence derived from alignment at scaffold_33:165659..167433+ (Nannochloropsis oceanica)
AATGGGATTTTCTTTTCTCTTGGTTTTCTGTTCCACCAGCTTGGTACAGC
ACACCACCCGGAAGTCAAGCTTCAATGCACGCGCTGACATGGGGGGGCGA
TGTCAACTGTCCGTCGTCTCACGTCATTCCGAATACAAGGTAATGCTATG
CATATGGCTGGAAACGAGGTGGAAGAATGCGCCCTAGCAGCCACTACTAT
GTCTTGATCTGAACAGAACGGGAGAGTGCGTGGCTCCAGCAAGAATGTAG
TAAGGCCTCGTTTCCCCTATCCAACAAGTTGCACCTACGCTCACGTTCTC
ATTCCCACATACATTTACTCATTTCGAAGGAACAGCAGCAGCGGGAGATC
CAGAAGCGGCACTGCTCGTGAAGCGAGGACATGAGGAGAGCACTGGCTCG
CGTGACGCCGCGCTTGCTCGTCCTCTTGGTGACTATCTGGCTCATGGCGG
TAAGTGCCACATGTTATGGAGGAGATTGTTTAAGCCTGGTGAACGCAGTG
TAAGAGAAGTTCTAGCAACACCATAATCACCAGCATGTGTCTGTTTCATT
TCCCGCTTCCTACTCCTATGCGTGCTGCTTGTTTCCCATCCCTTCAATCT
CCCCCTCCCTGCACACGACGCTGCCCCTCCCCTCCCACTCCCAGGCCTCC
AACGCCCTCAGGCCGCTGTCCTCATCCTCTTCCACAAGACTAAGATCATC
AGCCCTCTTTCAATTCTTGCACTCTTCCCCTTGCTCCTCCTGCTCATCTT
CCACCCCTCACGACGACCACCACCACCACCACCACCATTCCTGCGGCTGT
GGATCTCGCCCCTCCTTCTCCTCCCCCCGGCAAATATCTCGCACCTCATC
ATATCAACAAAGAAGAGCTCCTCCTTCCTTCCTAGCCCTTCAAGGCGGTC
CTCTGCTGGACTATGACATGATCCACGTGGCGGGCGATGTCGTGGCGGGC
TTTGTGGGCGGCGCCGTGGGGGTCATGGGCACCATCATGGCCCTTGAGGT
CAAGATGCGGCAAGGTAGGTGAGGGGCAGCGAGGAAGGGAGGGAGAAAGG
GGCGGAGGGAGGTAAGGAAGGCAGACAAAAGAGAGGACGGGTAGGAAGAA
AGAAAAGAGCCGAAGAAATGATTCTTACGGTCCATCTTCTCGTTCATGAG
CCTCCAGGCGGCAGAAGGGCAGCAATAAAAGACCATCTCACGTACTCCCT
TCCTCCCTTCCTCCCTCCCGCCCTCCCTCGCTTGGTCCCCAGTAAATGAA
CGCAGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTGCTCG
GTGCTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGAGGGG
GCGAAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGGCGTG
GGGACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCCCGGT
GATGCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAGGAGT
ACGGCATGGGGTAAGGAGCTCCTCCTACCTCCCCACCTCCCCCCCTCCCT
CACTCAGGGGTGTGTGGCCTTTGGTTGGAGTGGTGAGGTGAAGAGGACGT
GGCAGGGACTAGGAGGGCGTAGCGACTGCGGCTTATGGCAGATCCACAGG
AGGGGGATTAATGAGCACGCAAAAAGCTGGGCCTCGAGGTGCTGGGGGAA
GGAGGGGGAGGAGGAGGGTAACGAAGAAAAGGAAGAGGAGGAGAAAGGAG
GAATGGGCCGAGGCGAAGAGGGAGT

Coding sequence (CDS) from alignment at scaffold_33:165659..167433+

>mRNA_9278 ID=mRNA_9278|Name=jgi.p|Nanoce1779_2|605956|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_33:165659..167433+ (Nannochloropsis oceanica)
ATGAGGAGAGCACTGGCTCGCGTGACGCCGCGCTTGCTCGTCCTCTTGGT
GACTATCTGGCTCATGGCGGCCTCCAACGCCCTCAGGCCGCTGTCCTCAT
CCTCTTCCACAAGACTAAGATCATCAGCCCTCTTTCAATTCTTGCACTCT
TCCCCTTGCTCCTCCTGCTCATCTTCCACCCCTCACGACGACCACCACCA
CCACCACCACCATTCCTGCGGCTGTGGATCTCGCCCCTCCTTCTCCTCCC
CCCGGCAAATATCTCGCACCTCATCATATCAACAAAGAAGAGCTCCTCCT
TCCTTCCTAGCCCTTCAAGGCGGTCCTCTGCTGGACTATGACATGATCCA
CGTGGCGGGCGATGTCGTGGCGGGCTTTGTGGGCGGCGCCGTGGGGGTCA
TGGGCACCATCATGGCCCTTGAGGTCAAGATGCGGCAAGTAAATGAACGC
AGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACGTGTGCTCGGTG
CTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGAGGGAGGGGGCG
AAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCCTGGGCGTGGGG
ACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCCATCCCGGTGAT
GCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCTGGAGGAGTACG
GCATGGGGTAAATGAGGAGAGCACTGGCTCGCGTGACGCCGCGCTTGCTC
GTCCTCTTGGTGACTATCTGGCTCATGGCGGCCTCCAACGCCCTCAGGCC
GCTGTCCTCATCCTCTTCCACAAGACTAAGATCATCAGCCCTCTTTCAAT
TCTTGCACTCTTCCCCTTGCTCCTCCTGCTCATCTTCCACCCCTCACGAC
GACCACCACCACCACCACCACCATTCCTGCGGCTGTGGATCTCGCCCCTC
CTTCTCCTCCCCCCGGCAAATATCTCGCACCTCATCATATCAACAAAGAA
GAGCTCCTCCTTCCTTCCTAGCCCTTCAAGGCGGTCCTCTGCTGGACTAT
GACATGATCCACGTGGCGGGCGATGTCGTGGCGGGCTTTGTGGGCGGCGC
CGTGGGGGTCATGGGCACCATCATGGCCCTTGAGGTCAAGATGCGGCAAG
TAAATGAACGCAGCAAGTGTCCCTATTGCTCCGGTTCAGGCCAGCTGACG
TGTGCTCGGTGCTGCGGCCTGCAAAGCATAAGCATCCGTCGAGGTGCCGA
GGGAGGGGGCGAAGGAGGGCGGGTGGAGAAGGAGCCGTGTCCTTCCTGCC
TGGGCGTGGGGACGGTCCTGTGCATCAACTGCAAGGGCGACGGGCTGGCC
ATCCCGGTGATGCTGGACAAGAAGGTGTCGAGGGACCCGGAGACGCGGCT
GGAGGAGTACGGCATGGGGTAAATGAGGAGAGCACTGGCTCGCGTGACGC
CGCGCTTGCTCGTCCTCTTGGTGACTATCTGGCTCATGGCGGCCTCCAAC
GCCCTCAGGCCGCTGTCCTCATCCTCTTCCACAAGACTAAGATCATCAGC
CCTCTTTCAATTCTTGCACTCTTCCCCTTGCTCCTCCTGCTCATCTTCCA
CCCCTCACGACGACCACCACCACCACCACCACCATTCCTGCGGCTGTGGA
TCTCGCCCCTCCTTCTCCTCCCCCCGGCAAATATCTCGCACCTCATCATA
TCAACAAAGAAGAGCTCCTCCTTCCTTCCTAGCCCTTCAAGGCGGTCCTC
TGCTGGACTATGACATGATCCACGTGGCGGGCGATGTCGTGGCGGGCTTT
GTGGGCGGCGCCGTGGGGGTCATGGGCACCATCATGGCCCTTGAGGTCAA
GATGCGGCAAGTAAATGAACGCAGCAAGTGTCCCTATTGCTCCGGTTCAG
GCCAGCTGACGTGTGCTCGGTGCTGCGGCCTGCAAAGCATAAGCATCCGT
CGAGGTGCCGAGGGAGGGGGCGAAGGAGGGCGGGTGGAGAAGGAGCCGTG
TCCTTCCTGCCTGGGCGTGGGGACGGTCCTGTGCATCAACTGCAAGGGCG
ACGGGCTGGCCATCCCGGTGATGCTGGACAAGAAGGTGTCGAGGGACCCG
GAGACGCGGCTGGAGGAGTACGGCATGGGGTAA

Synonyms

Publications