jgi.p|Nanoce1779_2|560215, mRNA_9277 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560215
Unique Name	mRNA_9277
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	864
Alignment location	scaffold_33:164795..165658 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	560301
Track	FilteredModels2
ProteinId	560215

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_33	supercontig	scaffold_33:164795..165658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560215	gene_9277	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560215	mRNA_9277-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9277	CDS_9277	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_33:164795..165658+
coding sequence from alignment at scaffold_33:164795..165658+

mRNA sequence

>mRNA_9277 ID=mRNA_9277|Name=jgi.p|Nanoce1779_2|560215|organism=Nannochloropsis oceanica|type=mRNA|length=864bp
ATGGGATTGGAAGATGAAGATGGAGGGAATGGAGGGCGGCAAGGTGGGGG
GGAGGGATGGGGGGGGCACGAAGGAGGAGGCAGAGAAAGAGAAGGAGAAG
GAGAAGGAGTAAATCCGCTCCTAAAGACGGCGCACGTGGACAAGCACTGC
AGCATTTGTCTGGCGGACTATGAGGAGGGCGATACGTTGTGCGTGCTGCC
ATGCCGACACTCGTACCACGACGACTGCCTAGACCACTGGATCACGGCCC
ACTCCAAGTGCCCCTTGTGCAACTACGACCTCCTCCTCGCCGGTGCGGCT
ACTGCTGCTACTCTCCCACCGTCTTTCCGGGGGGGGCAAGATCAGATCAT
GCCCATGGCACCGAGGCATGGGAGGAGGGTGGGGGGAGGAATGGACGGGG
ATCAGGAGGACAGGGACTCAACGCGCCTGCAGCAGCAGCAGCGACGGCTT
GAGCGGCAAAGGCGGCGGAACATGTATGAGGACCGAAGAGAGGCGGCCGC
TGGCTCATCCAACGTGCTGCGGATCGTCACGATGGAAGCTTAGAGTTATG
TGGCCGAGGCGCTGAGTGTCGTCAAGTTTGGTCAGAAGGGAGTGAAAAGC
AAGGAGTTGAGAGAGAGAGAGGGGGGAAGAGAGAGAGAGAGAGAGAAAAA
GAGAGAGGTCATGGAGGAGGAGAAGGGGAATGGGGAGGAGTGAAGTGATA
TGTGACAGTAAGAGTTGGGGCGGTGTGGAATCCTTAACTCTTACCGAGGG
AGACAACAGGCCAAAAACTAACGGCAAGAAGATGGACACAGCAAAGCGTA
CTTTAACAATAAGTGTAAAAGAAGGGAACACACGCGAGGGAAGAGAAGCA
ATGTTGTCATAGGG

protein sequence of jgi.p|Nanoce1779_2|560215

>mRNA_9277-protein ID=mRNA_9277-protein|Name=jgi.p|Nanoce1779_2|560215|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MGLEDEDGGNGGRQGGGEGWGGHEGGGREREGEGEGVNPLLKTAHVDKHC
SICLADYEEGDTLCVLPCRHSYHDDCLDHWITAHSKCPLCNYDLLLAGAA
TAATLPPSFRGGQDQIMPMAPRHGRRVGGGMDGDQEDRDSTRLQQQQRRL
ERQRRRNMYEDRREAAAGSSNVLRIVTMEA*

mRNA from alignment at scaffold_33:164795..165658+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9277 ID=mRNA_9277|Name=jgi.p|Nanoce1779_2|560215|organism=Nannochloropsis oceanica|type=mRNA|length=864bp|location=Sequence derived from alignment at scaffold_33:164795..165658+ (Nannochloropsis oceanica)
ATGGGATTGGAAGATGAAGATGGAGGGAATGGAGGGCGGCAAGGTGGGGG
GGAGGGATGGGGGGGGCACGAAGGAGGAGGCAGAGAAAGAGAAGGAGAAG
GAGAAGGAGTAAATCCGCTCCTAAAGACGGCGCACGTGGACAAGCACTGC
AGCATTTGTCTGGCGGACTATGAGGAGGGCGATACGTTGTGCGTGCTGCC
ATGCCGACACTCGTACCACGACGACTGCCTAGACCACTGGATCACGGCCC
ACTCCAAGTGCCCCTTGTGCAACTACGACCTCCTCCTCGCCGGTGCGGCT
ACTGCTGCTACTCTCCCACCGTCTTTCCGGGGGGGGCAAGATCAGATCAT
GCCCATGGCACCGAGGCATGGGAGGAGGGTGGGGGGAGGAATGGACGGGG
ATCAGGAGGACAGGGACTCAACGCGCCTGCAGCAGCAGCAGCGACGGCTT
GAGCGGCAAAGGCGGCGGAACATGTATGAGGACCGAAGAGAGGCGGCCGC
TGGCTCATCCAACGTGCTGCGGATCGTCACGATGGAAGCTTAGAGTTATG
TGGCCGAGGCGCTGAGTGTCGTCAAGTTTGGTCAGAAGGGAGTGAAAAGC
AAGGAGTTGAGAGAGAGAGAGGGGGGAAGAGAGAGAGAGAGAGAGAAAAA
GAGAGAGGTCATGGAGGAGGAGAAGGGGAATGGGGAGGAGTGAAGTGATA
TGTGACAGTAAGAGTTGGGGCGGTGTGGAATCCTTAACTCTTACCGAGGG
AGACAACAGGCCAAAAACTAACGGCAAGAAGATGGACACAGCAAAGCGTA
CTTTAACAATAAGTGTAAAAGAAGGGAACACACGCGAGGGAAGAGAAGCA
ATGTTGTCATAGGG

Coding sequence (CDS) from alignment at scaffold_33:164795..165658+

>mRNA_9277 ID=mRNA_9277|Name=jgi.p|Nanoce1779_2|560215|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_33:164795..165658+ (Nannochloropsis oceanica)
ATGGGATTGGAAGATGAAGATGGAGGGAATGGAGGGCGGCAAGGTGGGGG
GGAGGGATGGGGGGGGCACGAAGGAGGAGGCAGAGAAAGAGAAGGAGAAG
GAGAAGGAGTAAATCCGCTCCTAAAGACGGCGCACGTGGACAAGCACTGC
AGCATTTGTCTGGCGGACTATGAGGAGGGCGATACGTTGTGCGTGCTGCC
ATGCCGACACTCGTACCACGACGACTGCCTAGACCACTGGATCACGGCCC
ACTCCAAGTGCCCCTTGTGCAACTACGACCTCCTCCTCGCCGGTGCGGCT
ACTGCTGCTACTCTCCCACCGTCTTTCCGGGGGGGGCAAGATCAGATCAT
GCCCATGGCACCGAGGCATGGGAGGAGGGTGGGGGGAGGAATGGACGGGG
ATCAGGAGGACAGGGACTCAACGCGCCTGCAGCAGCAGCAGCGACGGCTT
GAGCGGCAAAGGCGGCGGAACATGTATGAGGACCGAAGAGAGGCGGCCGC
TGGCTCATCCAACGTGCTGCGGATCGTCACGATGGAAGCTTAG

Synonyms

Publications